mRNA_H-paniculata_contig3449.9197.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3449.9197.1
Unique NamemRNA_H-paniculata_contig3449.9197.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3449.9197.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3449contigH-paniculata_contig3449:13982..14668 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size689
Cds size387
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930063.5826938-UTR-H-paniculata_contig3449:13981..142811622930063.5826938-UTR-H-paniculata_contig3449:13981..14281Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3449 13982..14281 +
1691481131.7665935-UTR-H-paniculata_contig3449:13981..142811691481131.7665935-UTR-H-paniculata_contig3449:13981..14281Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3449 13982..14281 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930063.600787-CDS-H-paniculata_contig3449:14281..146681622930063.600787-CDS-H-paniculata_contig3449:14281..14668Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3449 14282..14668 +
1691481131.776663-CDS-H-paniculata_contig3449:14281..146681691481131.776663-CDS-H-paniculata_contig3449:14281..14668Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3449 14282..14668 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3449.9197.1prot_H-paniculata_contig3449.9197.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3449 14282..14668 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3449.9197.1

>prot_H-paniculata_contig3449.9197.1 ID=prot_H-paniculata_contig3449.9197.1|Name=mRNA_H-paniculata_contig3449.9197.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=129bp
MQAFPRRPRLGLHGALLPILPFLCLSMRQNASACLRMISKLASGSSFAST
VNFGQIPPIIATAHGCHSPPSSNSRSFAPLSSIYLSNASAIHSTRSATQR
SLFIFNLGWNARLAPGLWRFLRSPRFVSL
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mRNA from alignment at H-paniculata_contig3449:13982..14668+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3449.9197.1 ID=mRNA_H-paniculata_contig3449.9197.1|Name=mRNA_H-paniculata_contig3449.9197.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=687bp|location=Sequence derived from alignment at H-paniculata_contig3449:13982..14668+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTTGGTCTTGGTCCCATCAACCTTGCCCCCCTCAGCTTCGGTAAACTCT
TCCGAGGGCATTGTTGTGATGGCCCCCATACACACTGACCCGCCACCTGA
CCCAGATTGGCCGATCTTCGACCTTGTCCGCTCGGACCGCGGTCCATCGT
TTTTCTTCGCACTAGCCCCACCTTTCTCTTCCTTGCTGGGAGCTTCTGTC
CCCTGACTTTTCCGTGGACACTTCGCAGCCGCGTGGCCTTCCTCGTGGCA
ATTGAAGCATTCATTATCAAACGGTTGGCTGTCCATCGACTGTCGTGGTG
ATGCAGGCCTTTCCTCGTCGGCCGAGGCTTGGCCTCCACGGCGCTCTCCT
TCCTATTCTTCCATTCTTGTGTCTCTCCATGAGACAGAACGCATCCGCAT
GCTTGCGCATGATCTCCAAGCTAGCGTCAGGATCCTCCTTCGCATCAACT
GTGAACTTCGGTCAAATACCTCCAATCATCGCCACCGCCCACGGTTGCCA
CTCGCCACCCTCAAGCAACAGCCGGTCCTTCGCACCGCTTTCCTCAATTT
ACCTCTCCAACGCCTCTGCGATTCATTCGACGCGGTCTGCCACACAGCGC
TCCTTGTTCATATTTAATTTAGGATGGAACGCACGTCTCGCCCCAGGCTT
GTGGCGCTTCCTTCGCTCGCCCCGCTTTGTAAGTCTG
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Coding sequence (CDS) from alignment at H-paniculata_contig3449:13982..14668+

>mRNA_H-paniculata_contig3449.9197.1 ID=mRNA_H-paniculata_contig3449.9197.1|Name=mRNA_H-paniculata_contig3449.9197.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=774bp|location=Sequence derived from alignment at H-paniculata_contig3449:13982..14668+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGGCCTTTCCTCGTCGGCCGAGGCTTGGCCTCCACGGCGCTCTCCT
TCCTATTCTTCCATTCTTGTGTCTCTCCATGAGACAGAACGCATCCGCAT
GCTTGCGCATGATCTCCAAGCTAGCGTCAGGATCCTCCTTCGCATCAACT
GTGAACTTCGGTCAAATACCTCCAATCATCGCCACCGCCCACGGTTGCCA
CTCGCCACCCTCAAGCAACAGCCGGTCCTTCGCACCGCTTTCCTCAATTT
ACCTCTCCAACGCCTCTGCGATTCATTCGACGCGGTCTGCCACACAGCGC
TCCTTGTTCATATTTAATTTAGGATGGAACGCACGTCTCGCCCCAGGCTT
GTGGCGCTTCCTTCGCTCGCCCCGCTTTGTAAGTCTGATGCAGGCCTTTC
CTCGTCGGCCGAGGCTTGGCCTCCACGGCGCTCTCCTTCCTATTCTTCCA
TTCTTGTGTCTCTCCATGAGACAGAACGCATCCGCATGCTTGCGCATGAT
CTCCAAGCTAGCGTCAGGATCCTCCTTCGCATCAACTGTGAACTTCGGTC
AAATACCTCCAATCATCGCCACCGCCCACGGTTGCCACTCGCCACCCTCA
AGCAACAGCCGGTCCTTCGCACCGCTTTCCTCAATTTACCTCTCCAACGC
CTCTGCGATTCATTCGACGCGGTCTGCCACACAGCGCTCCTTGTTCATAT
TTAATTTAGGATGGAACGCACGTCTCGCCCCAGGCTTGTGGCGCTTCCTT
CGCTCGCCCCGCTTTGTAAGTCTG
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