mRNA_H-paniculata_contig3448.9196.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3448.9196.1
Unique NamemRNA_H-paniculata_contig3448.9196.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3448.9196.1 vs. uniprot
Match: D7G199_ECTSI (N-acetyltransferase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G199_ECTSI)

HSP 1 Score: 168 bits (425), Expect = 4.170e-44
Identity = 128/339 (37.76%), Postives = 163/339 (48.08%), Query Frame = 2 
Query:   32 VFLLSCYGLSLSLAFSPYSTSWTTYAGHGCCGNHRAPMTTTTARRRPSGNSTHTISRC-LFSPEHAA--SATNRAPSDSAKPSDSSKGNQXXXXXXXXWXSWGKVVSQREEQEEVLKKIHYNSDASLASSKLRVRTGLKSDMAAVSHLCVDTFRGPYEWYMLPLQLFQEFTFFGQINARLGMVNRNEIQHGMVVVEDTVSNTVVGFLEIGMLPPPTSFEQQSLATTGSPDILEAKSVNPKISSSEDSGSAGGVWEAAARVAAATSSKVFSKKKVNIISAGEDGSSSDVGETADVDESRRRRIEQRRKQPDAAYLANVVVDKEQRRRGIGRMMVASAVEI 1039
            + +L  YGL + LAF+P                   P+     R R    +T +   C LFSP+H        RAPS +AK +  ++G +        W SW KVVSQR EQ+EVL +   ++     ++KL VRT    DM ++S LC+D FRGP++W+ LP+QLFQEF FFGQI  RLG V RNEI+H MV+ +DT S  VVGFLEIGMLP P+S E+ +LA                                                                  TA           +R KQPD AYLANVVVD+ QRRRGIGR MV SA+EI
Sbjct:    6 IAVLCWYGLPVGLAFAP------------------PPL----VRARVGSRNTASAVACHLFSPDHGDHDGPIVRAPSKAAKAA--AQGKEVSGKPSGGWGSWEKVVSQRVEQDEVLDRFT-SAGGVPEAAKLAVRTANSGDMPSISRLCIDIFRGPFQWFELPIQLFQEFAFFGQIKGRLGRVTRNEIKHSMVIAQDTTSRRVVGFLEIGMLPKPSSSEESALAGESLTAARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAI----------KREKQPDVAYLANVVVDRGQRRRGIGRTMVNSAIEI 309
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BLAST of mRNA_H-paniculata_contig3448.9196.1 vs. uniprot
Match: A0A836CF34_9STRA (N-acetyltransferase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF34_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 4.040e-11
Identity = 66/216 (30.56%), Postives = 96/216 (44.44%), Query Frame = 2 
Query:  443 DMAAVSHLCVDTFRGPYEWYMLPLQLFQEFTFFGQINARLGMVNRNEIQHGMVVVEDTVSNTVVGFLEIGMLPPPTSFEQQSLATTGSPDILEAKSVNPKISSSEDSGSAGGVWEAAARVAAATSSKVFSKKKVNIISAGEDGSSSDVGETADVDESRRRRIEQRRKQPDAAYLANVVVDKEQRRRGIGRMMVASAVEITRALWPD-EKRLYVTVE 1087
            D+AA S LC+ TFRGP  W+     L QE +   ++  RL  ++ N ++H MVV        +VGF+E+GMLPPP  F +  ++         A+  N            G   +   RV + T       +     +A        +  +A  DE  R R       PD  YLAN+VV  + R RG+G  +V  A  +    WP  + RL+V VE
Sbjct:    7 DLAAASRLCIQTFRGPVPWWQGLQGLRQELSLTYRLQQRLKGIDANTMEHKMVVAVGG-DGQIVGFMEVGMLPPPVGFYEMDVS---------AQDWN------------GATVQVQRRVPSPTRPVQNGYRLTRARAA--------LMASAATDEGYRVRP------PDVPYLANLVVATDYRGRGVGSKLVKLAQLLVARKWPSRQSRLFVLVE 186
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3448.9196.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G199_ECTSI4.170e-4437.76N-acetyltransferase domain-containing protein n=2 ... [more]
A0A836CF34_9STRA4.040e-1130.56N-acetyltransferase domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3448contigH-paniculata_contig3448:12156..14270 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionSecreted acetyltransferase (GNAT) domain protein
Ec32 orthologEc-12_005280.1
Exons2
Model size1476
Cds size1224
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3448.9196.1prot_H-paniculata_contig3448.9196.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3448 12172..14034 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930063.4663677-UTR-H-paniculata_contig3448:12155..121711622930063.4663677-UTR-H-paniculata_contig3448:12155..12171Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3448 12156..12171 +
1691481131.7298365-UTR-H-paniculata_contig3448:12155..121711691481131.7298365-UTR-H-paniculata_contig3448:12155..12171Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3448 12156..12171 +
1622930063.5219533-UTR-H-paniculata_contig3448:14034..142701622930063.5219533-UTR-H-paniculata_contig3448:14034..14270Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3448 14035..14270 +
1691481131.7572353-UTR-H-paniculata_contig3448:14034..142701691481131.7572353-UTR-H-paniculata_contig3448:14034..14270Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3448 14035..14270 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930063.4830818-CDS-H-paniculata_contig3448:12171..126811622930063.4830818-CDS-H-paniculata_contig3448:12171..12681Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3448 12172..12681 +
1691481131.738171-CDS-H-paniculata_contig3448:12171..126811691481131.738171-CDS-H-paniculata_contig3448:12171..12681Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3448 12172..12681 +
1622930063.5000436-CDS-H-paniculata_contig3448:13320..140341622930063.5000436-CDS-H-paniculata_contig3448:13320..14034Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3448 13321..14034 +
1691481131.7498212-CDS-H-paniculata_contig3448:13320..140341691481131.7498212-CDS-H-paniculata_contig3448:13320..14034Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3448 13321..14034 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3448.9196.1

>prot_H-paniculata_contig3448.9196.1 ID=prot_H-paniculata_contig3448.9196.1|Name=mRNA_H-paniculata_contig3448.9196.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=408bp
MTAAAVFLLSCYGLSLSLAFSPYSTSWTTYAGHGCCGNHRAPMTTTTARR
RPSGNSTHTISRCLFSPEHAASATNRAPSDSAKPSDSSKGNQGKGGLKGS
WGSWGKVVSQREEQEEVLKKIHYNSDASLASSKLRVRTGLKSDMAAVSHL
CVDTFRGPYEWYMLPLQLFQEFTFFGQINARLGMVNRNEIQHGMVVVEDT
VSNTVVGFLEIGMLPPPTSFEQQSLATTGSPDILEAKSVNPKISSSEDSG
SAGGVWEAAARVAAATSSKVFSKKKVNIISAGEDGSSSDVGETADVDESR
RRRIEQRRKQPDAAYLANVVVDKEQRRRGIGRMMVASAVEITRALWPDEK
RLYVTVEQVRRRLSAAVYTARKSVGLDFGRAEIRVIADVALHMLMTLICS
QGIATAV*
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mRNA from alignment at H-paniculata_contig3448:12156..14270+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3448.9196.1 ID=mRNA_H-paniculata_contig3448.9196.1|Name=mRNA_H-paniculata_contig3448.9196.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2115bp|location=Sequence derived from alignment at H-paniculata_contig3448:12156..14270+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGACAACCGCCAGGTAATGACTGCAGCAGCAGTGTTTTTGCTGTCCTGCT
ACGGCCTGTCTCTCAGCCTAGCTTTCTCCCCATATAGCACCTCATGGACG
ACTTATGCTGGACACGGCTGTTGCGGTAACCATCGCGCGCCAATGACAAC
GACGACAGCGCGCAGGAGGCCATCCGGAAACTCTACACACACCATCTCGC
GATGCCTGTTCAGTCCAGAACACGCTGCTAGTGCCACCAACCGAGCTCCG
TCGGACTCAGCAAAGCCATCAGATAGCAGCAAGGGTAATCAAGGCAAAGG
AGGACTCAAGGGAAGCTGGGGAAGTTGGGGGAAAGTTGTGTCCCAGCGCG
AGGAACAAGAGGAAGTTCTGAAGAAAATTCATTACAACAGCGATGCCTCG
CTGGCCTCGTCGAAGCTGCGTGTCCGCACCGGGCTCAAAAGCGACATGGC
AGCTGTATCGCACTTGTGCGTGGACACATTTCGAGGGCCTTACGAGTGGT
ATATGCTACCGCTACAGCTTTTTCAGGTGGCCCGTGGTGTCAGTTGTGCA
TGCAGCCTTGTTTTATTTCAGTTTGTACTACACTAGTCTCTAGCGCCCGT
TCCCATCTACTGTAATCGCTAATTCAAATACAACGAAAAACGACGTGTAT
GACATAATGATGACTATAGGGAGCCGCCGCTGGTCAAATAGACAGACAGT
CCAGTTAGACATCCATCCAGCACAGAAAGGATATATGCATGGTTCTGCCC
ACAACGACTGCAGCGCTAGATGTTCTCATCAGATCAAGTCAGATGTATTT
TTGTTCCGAAACAGCCTCCGTCCCTGAAGGGGTCACGGGCAGCGGACTAG
AAAAGGTATACGTACTCGGTGATTATCAGAAACTGTAGGGTTATTAGTTT
TCACAGCGTTGACGATCATGTTGAAACGACTCGAATTTCACTATTTAATG
CATGGCACCAACTACTGCTTCCCTACTGCACGCTCATTACTCTCCCGCCC
GAATAGGCAATCGATATGTTGCAAAGGCCTCATGCGTCACGACAATCGTA
AAACAGCAGTTTTTAGATTCCGACGCTCTATTCGCCTCTACATGCCACGA
TTTCGAAACGATTCCTCATACCCTATCCCGTTTCTTTTGCCTCTTCTTGT
GGCACGAAACGTCAGGAGTTTACCTTCTTCGGGCAGATCAACGCGCGGCT
TGGCATGGTAAATCGAAACGAGATACAGCATGGCATGGTGGTTGTCGAAG
ACACCGTCTCCAATACAGTAGTCGGCTTCCTCGAGATAGGCATGCTACCA
CCCCCAACCTCATTTGAGCAGCAGTCTCTCGCCACAACCGGGTCGCCGGA
TATACTCGAGGCAAAAAGTGTCAACCCGAAAATAAGCAGTTCGGAAGATT
CGGGCTCAGCGGGAGGGGTGTGGGAGGCAGCGGCAAGGGTGGCAGCAGCC
ACAAGCAGCAAAGTTTTTTCCAAGAAGAAGGTTAATATTATTAGTGCCGG
TGAGGATGGCAGTAGCAGCGATGTGGGGGAGACTGCCGATGTCGATGAAA
GTCGTCGAAGGCGAATCGAGCAAAGACGAAAGCAGCCTGATGCGGCATAT
TTGGCGAACGTTGTGGTGGACAAGGAACAGCGACGGAGAGGGATCGGACG
CATGATGGTGGCGTCTGCTGTGGAGATCACGCGGGCACTTTGGCCGGACG
AAAAGCGCCTTTATGTAACAGTCGAGCAGGTACGGCGTAGATTAAGTGCA
GCTGTATATACAGCAAGAAAGTCAGTGGGACTGGATTTCGGCCGTGCTGA
AATAAGGGTGATCGCAGACGTTGCACTTCATATGTTGATGACCCTTATTT
GCAGTCAAGGGATTGCCACTGCGGTTTGAGATAAATGTTGTGACTTGTGA
TCCAGGAAACGAAAGGTTGGGGGCTAATGGGGCTGACCCTTACACTACAT
CAAAGTCATGTCTTGAGGTCTACATGATCCCTCTGGGAAGTAGGTCGGAC
CAGATGCAAATTAGTGCTAAGCAATCTGCTGCTGTGACCATTTCGCTTGG
TTATGCCGCCGTAATTTCTGTACGTGTTGATCTGTGACGTTTACCGGGAA
CGACATATTTTTTCG
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Coding sequence (CDS) from alignment at H-paniculata_contig3448:12156..14270+

>mRNA_H-paniculata_contig3448.9196.1 ID=mRNA_H-paniculata_contig3448.9196.1|Name=mRNA_H-paniculata_contig3448.9196.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2448bp|location=Sequence derived from alignment at H-paniculata_contig3448:12156..14270+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACTGCAGCAGCAGTGTTTTTGCTGTCCTGCTACGGCCTGTCTCTCAG
CCTAGCTTTCTCCCCATATAGCACCTCATGGACGACTTATGCTGGACACG
GCTGTTGCGGTAACCATCGCGCGCCAATGACAACGACGACAGCGCGCAGG
AGGCCATCCGGAAACTCTACACACACCATCTCGCGATGCCTGTTCAGTCC
AGAACACGCTGCTAGTGCCACCAACCGAGCTCCGTCGGACTCAGCAAAGC
CATCAGATAGCAGCAAGGGTAATCAAGGCAAAGGAGGACTCAAGGGAAGC
TGGGGAAGTTGGGGGAAAGTTGTGTCCCAGCGCGAGGAACAAGAGGAAGT
TCTGAAGAAAATTCATTACAACAGCGATGCCTCGCTGGCCTCGTCGAAGC
TGCGTGTCCGCACCGGGCTCAAAAGCGACATGGCAGCTGTATCGCACTTG
TGCGTGGACACATTTCGAGGGCCTTACGAGTGGTATATGCTACCGCTACA
GCTTTTTCAGATGACTGCAGCAGCAGTGTTTTTGCTGTCCTGCTACGGCC
TGTCTCTCAGCCTAGCTTTCTCCCCATATAGCACCTCATGGACGACTTAT
GCTGGACACGGCTGTTGCGGTAACCATCGCGCGCCAATGACAACGACGAC
AGCGCGCAGGAGGCCATCCGGAAACTCTACACACACCATCTCGCGATGCC
TGTTCAGTCCAGAACACGCTGCTAGTGCCACCAACCGAGCTCCGTCGGAC
TCAGCAAAGCCATCAGATAGCAGCAAGGGTAATCAAGGCAAAGGAGGACT
CAAGGGAAGCTGGGGAAGTTGGGGGAAAGTTGTGTCCCAGCGCGAGGAAC
AAGAGGAAGTTCTGAAGAAAATTCATTACAACAGCGATGCCTCGCTGGCC
TCGTCGAAGCTGCGTGTCCGCACCGGGCTCAAAAGCGACATGGCAGCTGT
ATCGCACTTGTGCGTGGACACATTTCGAGGGCCTTACGAGTGGTATATGC
TACCGCTACAGCTTTTTCAGGAGTTTACCTTCTTCGGGCAGATCAACGCG
CGGCTTGGCATGGTAAATCGAAACGAGATACAGCATGGCATGGTGGTTGT
CGAAGACACCGTCTCCAATACAGTAGTCGGCTTCCTCGAGATAGGCATGC
TACCACCCCCAACCTCATTTGAGCAGCAGTCTCTCGCCACAACCGGGTCG
CCGGATATACTCGAGGCAAAAAGTGTCAACCCGAAAATAAGCAGTTCGGA
AGATTCGGGCTCAGCGGGAGGGGTGTGGGAGGCAGCGGCAAGGGTGGCAG
CAGCCACAAGCAGCAAAGTTTTTTCCAAGAAGAAGGTTAATATTATTAGT
GCCGGTGAGGATGGCAGTAGCAGCGATGTGGGGGAGACTGCCGATGTCGA
TGAAAGTCGTCGAAGGCGAATCGAGCAAAGACGAAAGCAGCCTGATGCGG
CATATTTGGCGAACGTTGTGGTGGACAAGGAACAGCGACGGAGAGGGATC
GGACGCATGATGGTGGCGTCTGCTGTGGAGATCACGCGGGCACTTTGGCC
GGACGAAAAGCGCCTTTATGTAACAGTCGAGCAGGTACGGCGTAGATTAA
GTGCAGCTGTATATACAGCAAGAAAGTCAGTGGGACTGGATTTCGGCCGT
GCTGAAATAAGGGTGATCGCAGACGTTGCACTTCATATGTTGATGACCCT
TATTTGCAGTCAAGGGATTGCCACTGCGGTTTGAGAGTTTACCTTCTTCG
GGCAGATCAACGCGCGGCTTGGCATGGTAAATCGAAACGAGATACAGCAT
GGCATGGTGGTTGTCGAAGACACCGTCTCCAATACAGTAGTCGGCTTCCT
CGAGATAGGCATGCTACCACCCCCAACCTCATTTGAGCAGCAGTCTCTCG
CCACAACCGGGTCGCCGGATATACTCGAGGCAAAAAGTGTCAACCCGAAA
ATAAGCAGTTCGGAAGATTCGGGCTCAGCGGGAGGGGTGTGGGAGGCAGC
GGCAAGGGTGGCAGCAGCCACAAGCAGCAAAGTTTTTTCCAAGAAGAAGG
TTAATATTATTAGTGCCGGTGAGGATGGCAGTAGCAGCGATGTGGGGGAG
ACTGCCGATGTCGATGAAAGTCGTCGAAGGCGAATCGAGCAAAGACGAAA
GCAGCCTGATGCGGCATATTTGGCGAACGTTGTGGTGGACAAGGAACAGC
GACGGAGAGGGATCGGACGCATGATGGTGGCGTCTGCTGTGGAGATCACG
CGGGCACTTTGGCCGGACGAAAAGCGCCTTTATGTAACAGTCGAGCAGGT
ACGGCGTAGATTAAGTGCAGCTGTATATACAGCAAGAAAGTCAGTGGGAC
TGGATTTCGGCCGTGCTGAAATAAGGGTGATCGCAGACGTTGCACTTCAT
ATGTTGATGACCCTTATTTGCAGTCAAGGGATTGCCACTGCGGTTTGA
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