mRNA_H-paniculata_contig34372.9173.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig34372.9173.1 vs. uniprot
Match: A0A7D9KES8_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9KES8_PARCT) HSP 1 Score: 227 bits (578), Expect = 4.640e-65 Identity = 127/326 (38.96%), Postives = 198/326 (60.74%), Query Frame = 1
Query: 25 DEGGETNVLVAVYVDNLVIAGRRE-KVDELKHNISQRFRMKDLGSLSRVLGIEVRRDRPDGTITISQGSYSREVLKR*GFDEFRHPSRPTSPPNRSHLELYYRRSGNLSEYRGMVGSLMYASTRTRPDIAYAVHKAARRAEDRCREDFGTCKRIFRYPSTVPDLGIMFAGRSNGHGLEGFVDAD*AEDVEDRKSTTGYVFKLNDGAISSCSRKQQLVT*SSTEAEYVAAGEAGKERVYLRELLGSIGFGCRGNTTLFEDNKSVINISKGSGSHSRTKHIGVRWHGIREWIREGLLTLKRVQTSDQLADILTKGLSRVQFQTLRNLL 999
+EGGE ++AVYVD++++AG+ + K++E+K ++++F+MKD+G L LG++V I I Q +Y++ VL+R G + + S P +P + + + Y+ VG L+Y ST+TRPDIAYAV AR + D E + KRI RY + D+G+++ G G+ DAD A D++DRKST+GYVF++++ AIS S+KQ V S+ EAEY+A A +E V+L++LL + G + EDN++ I ++K + H R KHI +++H IRE + + L+ T + +ADI TKGLS VQF LR +L
Sbjct: 167 EEGGEI-FIIAVYVDDILLAGKNDQKINEVKQALAEQFQMKDMGQLHYFLGVKVIPKPDSKEIWIGQEAYTKSVLERFGMESSKPASTPVNPGTKLKKAADDSQRVDQVNYQCAVGHLLYLSTKTRPDIAYAVSDVARFSADPTEEHWIAVKRIMRYLNGTRDMGLLYDGSKTTTSCVGYSDADWAGDLDDRKSTSGYVFQISNAAISWRSKKQSCVALSTAEAEYMALASATQEAVWLQQLLSDLKSKPTGPMLILEDNQAAICMAKNAQYHGRAKHIDIKYHFIREHVASAAVKLEYCSTEEMIADIFTKGLSVVQFTKLRKML 491
BLAST of mRNA_H-paniculata_contig34372.9173.1 vs. uniprot
Match: A0A7D9M6E1_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9M6E1_PARCT) HSP 1 Score: 218 bits (554), Expect = 1.700e-64 Identity = 119/333 (35.74%), Postives = 201/333 (60.36%), Query Frame = 1
Query: 1 DSRLYFSGDEGGETNVLVAVYVDNLVIAGRR-EKVDELKHNISQRFRMKDLGSLSRVLGIEVRRDRPDGTITISQGSYSREVLKR*GFDEFRHPSRPTSPPNRSHLELYYRRSGNLSEYRGMVGSLMYASTRTRPDIAYAVHKAARRAEDRCREDFGTCKRIFRYPSTVPDLGIMFAGRSNGHGLEGFVDAD*AEDVEDRKSTTGYVFKLNDGAISSCSRKQQLVT*SSTEAEYVAAGEAGKERVYLRELLGSIGFGCRGNTTLFEDNKSVINISKGSGSHSRTKHIGVRWHGIREWIREGLLTLKRVQTSDQLADILTKGLSRVQFQTLRNL 996
D +Y ++G +VA++VD++++AG+ EK+ ++K +I++RF++KD+G L +LG++V ++ DG + I Q +Y+ ++K+ G + + P ++ + N EY+ VGSL+Y S+ TRPDI +AV+ A+ + + E + KRIFRY + G++++ +N + GF DAD A D+ DRKST+GY F++N A+S S+KQ V S+ EAEYVA A +E +++R+LL + T++EDN+S I +SK H R+KHI +++H +R+ + + LT+ T LAD+ TKG+ + QF+ LR L
Sbjct: 49 DPCIYVKEEDGDI--FVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQE--DGKVWIGQPTYTASIIKKYGMENCKPVETPVDLSSKLVSAMEDSELFNKEEYQSAVGSLLYLSSATRPDITFAVNNVAKFSANFTNEHWTAVKRIFRYLKKTVNYGLLYSENANPDCV-GFSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQTCVALSTAEAEYVALSAAAQEALWMRQLLTDLNVNIDKPMTIYEDNQSAIAMSKNPQFHGRSKHIDIKYHFVRDQVEKKTLTVLYCPTGSMLADLFTKGIPKEQFKKLREL 376
BLAST of mRNA_H-paniculata_contig34372.9173.1 vs. uniprot
Match: A0A6S7JEY7_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JEY7_PARCT) HSP 1 Score: 221 bits (564), Expect = 2.000e-63 Identity = 124/326 (38.04%), Postives = 196/326 (60.12%), Query Frame = 1
Query: 25 DEGGETNVLVAVYVDNLVIAGRRE-KVDELKHNISQRFRMKDLGSLSRVLGIEVRRDRPDGTITISQGSYSREVLKR*GFDEFRHPSRPTSPPNRSHLELYYRRSGNLSEYRGMVGSLMYASTRTRPDIAYAVHKAARRAEDRCREDFGTCKRIFRYPSTVPDLGIMFAGRSNGHGLEGFVDAD*AEDVEDRKSTTGYVFKLNDGAISSCSRKQQLVT*SSTEAEYVAAGEAGKERVYLRELLGSIGFGCRGNTTLFEDNKSVINISKGSGSHSRTKHIGVRWHGIREWIREGLLTLKRVQTSDQLADILTKGLSRVQFQTLRNLL 999
+EGGE ++AVYVD++++AG+ + K++E+K ++++F+MKD+G LG++V + I I Q +Y++ VL+R G + + S P +P + + + Y+ VG L+Y ST+TRPDIAYAV AR + E + KRI RY + D+G+++ G G+ DAD A D++DRKST+GYVF++++ AIS S+KQ V S+ EAEY+ A +E V+L++LL + G + EDN++ I ++K + H R KHI +++H IRE + + L+ T + +ADI TKGLS VQF LR +L
Sbjct: 315 EEGGEI-FIIAVYVDDILLAGKNDQKINEVKQALAEQFQMKDMGQRHYFLGVKVIQKPDSKEIWIGQEAYTKSVLERFGMESSKPASTPVNPGTKLKKAADDSQRVDQVNYQCAVGHLLYLSTKTRPDIAYAVSDVARFSAHPTEEHWIAVKRIMRYLNGTRDMGLLYDGSKTTTSCVGYSDADWAGDLDDRKSTSGYVFQISNAAISWRSKKQSCVALSTAEAEYMTLASATQEAVWLQQLLSDLKSKPTGPMLILEDNQAAICMAKNAQYHGRAKHIDIKYHFIREHVASAAVKLEYCSTEEMIADIFTKGLSVVQFTKLRKML 639
BLAST of mRNA_H-paniculata_contig34372.9173.1 vs. uniprot
Match: A0A7D9D5L2_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9D5L2_PARCT) HSP 1 Score: 207 bits (527), Expect = 2.170e-61 Identity = 115/300 (38.33%), Postives = 173/300 (57.67%), Query Frame = 1
Query: 100 VDELKHNISQRFRMKDLGSLSRVLGIEVRRDRPDGTITISQGSYSREVLKR*GFDEFRHPSRPTSPPNRSHLELYYRRSGNLSEYRGMVGSLMYASTRTRPDIAYAVHKAARRAEDRCREDFGTCKRIFRYPSTVPDLGIMFAGRSNGHGLEGFVDAD*AEDVEDRKSTTGYVFKLNDGAISSCSRKQQLVT*SSTEAEYVAAGEAGKERVYLRELLGSIGFGCRGNTTLFEDNKSVINISKGSGSHSRTKHIGVRWHGIREWIREGLLTLKRVQTSDQLADILTKGLSRVQFQTLRNLL 999
+ E K I +F++ D+G + VLG+ +RRDR G +TISQ +Y + +LKR G ++ + S P P N +EY+ ++G L Y +T TRPD+A AV ++ +E + KR+ RY + G++F G+S L G+ DAD A D++ R+ST+GYVF++N +S CS++Q VT S+TEAEYVA A +E V+LR LL IG + + EDN+ I +SK H+RTKHI V +H +RE + + + + T LAD++TK L R FQ R++L
Sbjct: 2 LSEEKKLIGLKFKVDDMGEVKHVLGMVIRRDRRKGKMTISQSTYLQGILKRFGMEQCKPVSTPLEPGKHFQELPDDENPTNTNEYQKLIGCLTYVTTATRPDLASAVGILSKFMSKPSKEHWHGAKRVLRYIKDTVNYGLVFEGKSTKCSLIGYSDADWANDLDTRRSTSGYVFQINGSTVSWCSKRQPCVTRSTTEAEYVALSHATQEIVWLRRLLNDIGEKQDQPSIMNEDNQGAIELSKNPRFHNRTKHIDVAYHFVREKVGDKSINVNYCSTDKMLADVMTKSLPRQTFQKFRDML 301
BLAST of mRNA_H-paniculata_contig34372.9173.1 vs. uniprot
Match: A0A8H7NTQ9_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Postia placenta TaxID=104341 RepID=A0A8H7NTQ9_9APHY) HSP 1 Score: 221 bits (563), Expect = 3.030e-61 Identity = 128/324 (39.51%), Postives = 191/324 (58.95%), Query Frame = 1
Query: 1 DSRLYFSGDEGGETNVLVAVYVDN-LVIAGRREKVDELKHNISQRFRMKDLGSLSRVLGIEVRRDRPDGTITISQGSYSREVLKR*GFDEFRHPSRPTSPPNRSHLELYYRRSGNLSEYRGMVGSLMYASTRTRPDIAYAVHKAARRAEDRCREDFGTCKRIFRYPSTVPDLGIMFAGRSNGHGLEGFVDAD*AEDVEDRKSTTGYVFKLNDGAISSCSRKQQLVT*SSTEAEYVAAGEAGKERVYLRELLGSIGFGCRGNTTLFEDNKSVINISKGSGSHSRTKHIGVRWHGIREWIREGLLTLKRVQTSDQLADILTKGLSR 969
D +++ D G T V++A+YVD+ L+++ + V+ LK N+ RF M DLG +L +E+ RDRP + +SQ Y + L+R G + R S P + N+ HL+L + Y+ +GSLMYA RTRPD+A+AV ++ A +E + R++RY D +++ G + L G+VDAD A D+ DR+S TG+VF ++ A++ S+KQ SSTEAEY+A KE ++LR L IG G+T L DN+S I ++K H+RTKHI VR+H IRE G +T + V T +Q+AD+LTKGL+R
Sbjct: 800 DHSVFYKVDNG--TLVIIAIYVDDMLILSDDIDAVNTLKANLKSRFEMTDLGEARWILSMEILRDRPRRLLELSQHQYVEKALERHGMADCRPVSTPMAQ-NQKHLKLPQAEI-DPKPYQSALGSLMYAMLRTRPDLAFAVGALSQHAATPGKEHWHALMRVYRYLRGTSDRRLVYNGTAKEKHLLGYVDADWAADINDRRSVTGFVFLISGAAVTWSSKKQSSTAQSSTEAEYMAGAHGTKEAIWLRAFLSEIGQAISGSTPLLIDNQSAIALAKNPEFHNRTKHIAVRYHFIREKYDSGDITPEYVPTGNQVADVLTKGLAR 1119
BLAST of mRNA_H-paniculata_contig34372.9173.1 vs. uniprot
Match: H3GB17_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GB17_PHYRM) HSP 1 Score: 209 bits (533), Expect = 4.290e-61 Identity = 122/312 (39.10%), Postives = 190/312 (60.90%), Query Frame = 1
Query: 49 LVAVYVDNLVIAGR-REKVDELKHNISQRFRMKDLGSLSRVLGIEVRRDRPDGTITISQGSYSREVLKR*GFDEFRHPSRPTSPPNR----SHLELYYRRSGNLSEYRGMVGSLMYASTRTRPDIAYAVHKAARRAEDRCREDFGTCKRIFRYPSTVPDLGIMFAGRSNGHGLEGFVDAD*AEDVEDRKSTTGYVFKLNDGAISSCSRKQQLVT*SSTEAEYVAAGEAGKERVYLRELLGSIGFGCRGNTTLFEDNKSVINISKGSGSHSRTKHIGVRWHGIREWIREGLLTLKRVQTSDQLADILTKGLSR 969
++ VYVD+L+I R + ++ E+K + + F +K+LG L LGIE+ R+R D TI ++Q +Y + + ++ G ++ + P ++ + E++ R YR +VG+LMY +T TRPDIA AV + A+ E + + KRI +Y T DLG++F G + G L G+ DA A D++ R+STTGYVF LN AIS S++Q V SSTEAEY+A A +E V+LR+LL +G C TT+F+DN+ I ++K HSRTKHI +++H +RE + + ++ L+ T + +AD TK L+R
Sbjct: 88 IIIVYVDDLMIFSRTKAEIGEIKKALKREFSIKELGELKYCLGIEIHRNRDDKTIVMNQRAYIQRLAEKFGVEKCKAVHTPADSNSKLVKPAEDEVFVPRY----PYRELVGALMYLATCTRPDIAQAVGEVAKFCERYNKSHWVAAKRILKYLKTTQDLGLVFNGGTKGE-LIGYADASWAGDLDTRRSTTGYVFFLNGSAISWKSKRQPTVATSSTEAEYMALYNATQEAVWLRQLLLDVGCECVAATTIFQDNQGCIALAKNPAYHSRTKHIDLKYHFLREKVEDKVIVLEYKPTDEMIADGFTKALAR 394
BLAST of mRNA_H-paniculata_contig34372.9173.1 vs. uniprot
Match: A0A0S7JP25_9TELE (POLX n=2 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7JP25_9TELE) HSP 1 Score: 208 bits (529), Expect = 6.040e-61 Identity = 128/321 (39.88%), Postives = 185/321 (57.63%), Query Frame = 1
Query: 49 LVAVYVDNLV-IAGRREKVDELKHNISQRFRMKDLGSLSRVLGIEVRRDRPDGTITISQGSYSREVLKR*GFDEFRHPSRPTSPPNRSHLELYYRRSGNLSE------YRGMVGSLMYASTRTRPDIAYAVHKAARRAEDRCREDFGTCKRIFRYPSTVPDLGIMFAGRSNGHGLEGFVDAD*AEDVEDRKSTTGYVFKLNDGAISSCSRKQQLVT*SSTEAEYVAAGEAGKERVYLRELLGSIGFGCRGNTTLFEDNKSVINISKGSGSHSRTKHIGVRWHGIREWIREGLLTLKRVQTSDQLADILTKGLSRVQFQTLR 990
++AVYVD+L+ I E +DELK + +R++MKDLG LS +LGI V +D+ I + Q Y +LK+ G D+ + P + P + + + ++ +S Y+ MVGSL+YA+ TRPDIA AV ++ + KRI RY +L + F N L GF DAD A D++DR STTG +F L+ GA+S S+KQ V S+ EAEYVA +A +E +LR LL +G + T + EDN+ I I+K HSRTKHI +R+H IRE +++G + L+ T ADILTK L+R +F+ R
Sbjct: 49 IIAVYVDDLMLITESTESMDELKLTLQERYKMKDLGELSYILGISVIQDKEKNCICLHQKQYIETILKKYGMDK----ANPVATP--ADISVKLKKDDGVSNPVDPSTYQSMVGSLLYAAMTTRPDIAQAVSAVSKFNANPNTAHLTAVKRILRYLKGTVNLALKFDCAGN-KDLIGFSDADWAGDLDDRHSTTGNIFLLSGGAVSWLSKKQATVALSTAEAEYVALSQAAQEGTWLRRLLNDLGMVTK-PTVILEDNQGAIAIAKNPVDHSRTKHIDIRYHYIRECVQDGEVKLEYCPTDKMKADILTKPLARQKFENFR 361
BLAST of mRNA_H-paniculata_contig34372.9173.1 vs. uniprot
Match: A0A438EU98_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=7 Tax=Vitis vinifera TaxID=29760 RepID=A0A438EU98_VITVI) HSP 1 Score: 206 bits (525), Expect = 1.380e-60 Identity = 126/317 (39.75%), Postives = 190/317 (59.94%), Query Frame = 1
Query: 46 VLVAVYVDNLVIAGRR-EKVDELKHNISQRFRMKDLGSLSRVLGIEVRRDRPDGTITISQGSYSREVLKR*GFDEFRHPSRPTSPPNRSHLELYYRRSGNLSE---------YRGMVGSLMYASTRTRPDIAYAVHKAARRAEDRCREDFGTCKRIFRYPSTVPDLGIMFAGRSNGHGLEGFVDAD*AEDVEDRKSTTGYVFKLNDGAISSCSRKQQLVT*SSTEAEYVAAGEAGKERVYLRELLGSIGFGCRGNTTLFEDNKSVINISKGSGSHSRTKHIGVRWHGIREWIREGLLTLKRVQTSDQLADILTKGLS 966
+++ +YVD+++IAG EK++ LK +S++F MKDLG+ ++LG+ + RD+ +GT+ +SQ Y ++VL R +E ++P S P SH +L +S E Y +GSLMYA TRPDIA+AV +R ++ + K I RY D + F G S L+G+VDAD A D++ RKSTTG+VF L AIS S Q++VT S+TEAEYVAA EAGKE ++L L +G + L D++S I ++K S HS++KHI ++H IR + + L+ L+++ S AD+LTKG++
Sbjct: 25 IILLLYVDDMLIAGSDIEKINNLKKQLSKQFAMKDLGAAKQILGMRIIRDKANGTLKLSQSEYVKKVLSRFNMNE----AKPVSTPLGSHFKLSKEQSPKTEEERDHMSKVPYASAIGSLMYAMVCTRPDIAHAVGVVSRFMSRPGKQHWEAVKWILRYLKGSLDTCLCFTGASLK--LQGYVDADFAGDIDSRKSTTGFVFTLGGTAISWTSNLQKIVTLSTTEAEYVAATEAGKEMIWLHGFLDELGK-KQEMGILHSDSQSAIFLAKNSAFHSKSKHIQTKYHFIRYLVEDKLVILEKICGSKNPADMLTKGVT 334
BLAST of mRNA_H-paniculata_contig34372.9173.1 vs. uniprot
Match: A0A482ZNW2_9GAMM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=uncultured SUP05 cluster bacterium TaxID=655186 RepID=A0A482ZNW2_9GAMM) HSP 1 Score: 206 bits (524), Expect = 2.060e-60 Identity = 123/333 (36.94%), Postives = 190/333 (57.06%), Query Frame = 1
Query: 1 DSRLYFSGDEGGETNVLVAVYVDNLVIAGR-REKVDELKHNISQRFRMKDLGSLSRVLGIEVRRDRPDGTITISQGSYSREVLKR*GFDEFRHPSRPTSPPNRSHLELYYRRSGNLSEYRGMVGSLMYASTRTRPDIAYAVHKAARRAEDRCREDFGTCKRIFRYPSTVPDLGIMFAGRSNGHGLEGFVDAD*AEDVEDRKSTTGYVFKLNDGAISSCSRKQQLVT*SSTEAEYVAAGEAGKERVYLRELLGSIGFGCRGNTTLFEDNKSVINISKGSGSHSRTKHIGVRWHGIREWIREGLLTLKRVQTSDQLADILTKGLSRVQFQTLRNL 996
D +Y S + GET+V + VYVD+ VIA + EK +E+K +S++F +KDLG L LG++V +D GTI I Q +++ +L++ G E + P ++ + S Y+ VGSL+Y +TRTR DIA+AV+ AR + + KRIFRY G++++ S G+ DAD D D KSTTGY+F++ A++ +KQ V S+ E+EY+A A +E V++REL +G T ++EDN+S I ++K H R+KHIG+++H IRE + + L+ T D +ADILTKG+ +F+ LR +
Sbjct: 9 DPCIYTSSE--GETSV-IGVYVDDFVIATKDTEKFEEVKAALSEKFDVKDLGRLHYFLGVQVIQDEEKGTIWIGQPTFTESILQKYGMCEAKPVKTPVCVNSKLLKASEESELTDQSLYQSAVGSLLYLATRTRLDIAFAVNNVARYCSKPTKPHWIAVKRIFRYLRGTTHFGLLYSRGSGAPTPIGYSDADWGGDCNDHKSTTGYLFQIGGTAVTWKCKKQSSVALSTAESEYMALSSAAQEAVWIRELNSDLGNPQSQPTLIYEDNQSAIAMAKNPQFHGRSKHIGIKYHFIREQVSNDKICLQYCPTEDMIADILTKGIGPEKFEKLRKM 338
BLAST of mRNA_H-paniculata_contig34372.9173.1 vs. uniprot
Match: A0A7D9IUY0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9IUY0_PARCT) HSP 1 Score: 219 bits (557), Expect = 2.550e-60 Identity = 128/334 (38.32%), Postives = 198/334 (59.28%), Query Frame = 1
Query: 1 DSRLYFSGD--EGGETN-VLVAVYVDNLV-IAGRREKVDELKHNISQRFRMKDLGSLSRVLGIEVRRDRPDGTITISQGSYSREVLKR*GFDEFRHPSRPTSPPNRSHLELYYRRSGNLSEYRGMVGSLMYASTRTRPDIAYAVHKAARRAEDRCREDFGTCKRIFRYPSTVPDLGIMFAGRSNGHGLEGFVDAD*AEDVEDRKSTTGYVFKLNDGAISSCSRKQQLVT*SSTEAEYVAAGEAGKERVYLRELLGSIGFGCRGNTTLFEDNKSVINISKGSGSHSRTKHIGVRWHGIREWIREGLLTLKRVQTSDQLADILTKGLSRVQFQTLR 990
DS LY + G+ N V+++++VD+++ + ++E K I +F+++DLG +S +LG+ ++RDR T+TISQ Y VLKR +E + S P P + H R N+ EY+ ++G L Y +T TRPD+A AV ++ +E + KRI RY + GI F + L G+ DAD A D E R+ST+GY+F+++ IS CS+KQ V+ SSTEAEY+A A +E ++LR LL +IG + +T + EDN++ I +S+ H+RTKHI V +H +RE +++ + + +T + LADILTKGL R F+ LR
Sbjct: 1011 DSCLYMKSVKLQNGKINFVILSIHVDDILWFSNDVIMLEEEKVAIGTKFKVEDLGEVSHILGMLIKRDRDSRTLTISQSKYLEGVLKRFNMEECKPVSTPLEPGKQFHELSDDERPANIHEYQKIIGCLTYVTTATRPDLAAAVGILSKYMTKPSQEHWKGVKRILRYIKGTLNFGITFQAKDQTCILTGYSDADWANDTETRRSTSGYIFQISGCTISWCSKKQSCVSRSSTEAEYMALSLATQEAIWLRRLLENIGVKQKESTVMCEDNQAAIQLSRNPKFHNRTKHIDVAFHFVREKVQDKSIDVVYCRTDEMLADILTKGLPRQTFEKLR 1344 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34372.9173.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig34372.9173.1 >prot_H-paniculata_contig34372.9173.1 ID=prot_H-paniculata_contig34372.9173.1|Name=mRNA_H-paniculata_contig34372.9173.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=72bp MVGSLMYASTRTRPDIAYAVHKAARRAEDRCREDFGTCKRIFRYPSTVPDback to top mRNA from alignment at H-paniculata_contig34372:400..1441- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig34372.9173.1 ID=mRNA_H-paniculata_contig34372.9173.1|Name=mRNA_H-paniculata_contig34372.9173.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1042bp|location=Sequence derived from alignment at H-paniculata_contig34372:400..1441- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig34372:400..1441- >mRNA_H-paniculata_contig34372.9173.1 ID=mRNA_H-paniculata_contig34372.9173.1|Name=mRNA_H-paniculata_contig34372.9173.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=432bp|location=Sequence derived from alignment at H-paniculata_contig34372:400..1441- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |