mRNA_H-paniculata_contig34344.9170.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig34344.9170.1
Unique NamemRNA_H-paniculata_contig34344.9170.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig34344.9170.1 vs. uniprot
Match: A0A2V3IDA5_9FLOR (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IDA5_9FLOR)

HSP 1 Score: 74.7 bits (182), Expect = 1.510e-13
Identity = 39/91 (42.86%), Postives = 59/91 (64.84%), Query Frame = 1 
Query:    7 VLLWWANHGCKKFRWLSHVARSILGHPATAAAIERDLSFRKAGRILSSRRSRLDVVYAEILMYLNVNFDLIPTCIPEIPSKGSYGHLPVRV 279
            +L WW   G  K+  LS VAR++LGHP ++A I+RD  F  AG  LSSRR+R D  + ++L++L+ N DLIP+ +PE+ +      +P R+
Sbjct:  244 LLNWWRTKG-SKYPSLSVVARAVLGHPVSSARIDRD--FGTAGSFLSSRRTRHDSAFVDMLLFLHCNLDLIPSDVPEMSNPEWKSQIPARL 331
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34344.9170.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IDA5_9FLOR1.510e-1342.86Dimer_Tnp_hAT domain-containing protein n=1 Tax=Gr... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig34344contigH-paniculata_contig34344:1863..2183 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size321
Cds size321
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930060.5282784-CDS-H-paniculata_contig34344:1862..21831622930060.5282784-CDS-H-paniculata_contig34344:1862..2183Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34344 1863..2183 -
1691481130.4935958-CDS-H-paniculata_contig34344:1862..21831691481130.4935958-CDS-H-paniculata_contig34344:1862..2183Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34344 1863..2183 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig34344.9170.1prot_H-paniculata_contig34344.9170.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig34344 1863..2183 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig34344.9170.1

>prot_H-paniculata_contig34344.9170.1 ID=prot_H-paniculata_contig34344.9170.1|Name=mRNA_H-paniculata_contig34344.9170.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=107bp
EEVLLWWANHGCKKFRWLSHVARSILGHPATAAAIERDLSFRKAGRILSS
RRSRLDVVYAEILMYLNVNFDLIPTCIPEIPSKGSYGHLPVRVKGIDELD
KSVTPSA
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mRNA from alignment at H-paniculata_contig34344:1863..2183-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig34344.9170.1 ID=mRNA_H-paniculata_contig34344.9170.1|Name=mRNA_H-paniculata_contig34344.9170.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=321bp|location=Sequence derived from alignment at H-paniculata_contig34344:1863..2183- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGGAAGTGCTACTGTGGTGGGCAAATCACGGCTGCAAGAAGTTCCGCTG
GCTCTCGCACGTGGCCAGATCCATTCTTGGCCACCCTGCGACCGCGGCTG
CCATCGAGCGGGACTTAAGCTTCAGAAAGGCTGGACGAATACTTTCCTCC
CGTCGCTCTAGACTCGATGTTGTATACGCCGAGATTTTGATGTACCTCAA
CGTCAACTTCGATCTCATTCCCACCTGCATCCCCGAGATACCCTCGAAGG
GAAGTTATGGGCACCTGCCGGTACGAGTGAAAGGCATCGATGAATTGGAC
AAATCTGTTACCCCGTCGGCA
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Coding sequence (CDS) from alignment at H-paniculata_contig34344:1863..2183-

>mRNA_H-paniculata_contig34344.9170.1 ID=mRNA_H-paniculata_contig34344.9170.1|Name=mRNA_H-paniculata_contig34344.9170.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at H-paniculata_contig34344:1863..2183- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGGAAGTGCTACTGTGGTGGGCAAATCACGGCTGCAAGAAGTTCCGCTG
GCTCTCGCACGTGGCCAGATCCATTCTTGGCCACCCTGCGACCGCGGCTG
CCATCGAGCGGGACTTAAGCTTCAGAAAGGCTGGACGAATACTTTCCTCC
CGTCGCTCTAGACTCGATGTTGTATACGCCGAGATTTTGATGTACCTCAA
CGTCAACTTCGATCTCATTCCCACCTGCATCCCCGAGATACCCTCGAAGG
GAAGTTATGGGCACCTGCCGGTACGAGTGAAAGGCATCGATGAATTGGAC
AAATCTGTTACCCCGTCGGCAGAGGAAGTGCTACTGTGGTGGGCAAATCA
CGGCTGCAAGAAGTTCCGCTGGCTCTCGCACGTGGCCAGATCCATTCTTG
GCCACCCTGCGACCGCGGCTGCCATCGAGCGGGACTTAAGCTTCAGAAAG
GCTGGACGAATACTTTCCTCCCGTCGCTCTAGACTCGATGTTGTATACGC
CGAGATTTTGATGTACCTCAACGTCAACTTCGATCTCATTCCCACCTGCA
TCCCCGAGATACCCTCGAAGGGAAGTTATGGGCACCTGCCGGTACGAGTG
AAAGGCATCGATGAATTGGACAAATCTGTTACCCCGTCGGCA
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