mRNA_H-paniculata_contig3434.9168.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3434.9168.1
Unique NamemRNA_H-paniculata_contig3434.9168.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig3434.9168.1 vs. uniprot
Match: D8LRR0_ECTSI (Small nuclear ribonucleoprotein G n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRR0_ECTSI)

HSP 1 Score: 145 bits (365), Expect = 5.430e-44
Identity = 69/75 (92.00%), Postives = 72/75 (96.00%), Query Frame = 1 
Query:    1 MAKGGPDLKRYMDKNLALKLNGNRIVKGVLRGYDPFMNLVLDEATDPASSDKKMGMIIVRGNSVVQFEILDPLRF 225
            MAKGGPDLKRYMDK L+LKLNGNR VKGVLRGYDPFMNLVLDE TDPASSDKKMGM+I+RGNSVVQFEILDPLRF
Sbjct:    1 MAKGGPDLKRYMDKTLSLKLNGNRTVKGVLRGYDPFMNLVLDETTDPASSDKKMGMVIIRGNSVVQFEILDPLRF 75
[Close]
BLAST of mRNA_H-paniculata_contig3434.9168.1 vs. uniprot
Match: A0A835YWI2_9STRA (Small nuclear ribonucleoprotein G n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWI2_9STRA)

HSP 1 Score: 105 bits (261), Expect = 4.360e-28
Identity = 48/73 (65.75%), Postives = 65/73 (89.04%), Query Frame = 1 
Query:   10 GGPDLKRYMDKNLALKLNGNRIVKGVLRGYDPFMNLVLDEATD-PASSDKKM-GMIIVRGNSVVQFEILDPLR 222
            GGPDLKRYMDK L LKLNGNR V+GVLRGYD FMN+VLDEA + P+ +++++ GM+++RGNSV++FE+LDP++
Sbjct:    5 GGPDLKRYMDKRLHLKLNGNREVRGVLRGYDQFMNIVLDEAVEVPSKAEERLIGMVVIRGNSVIRFEVLDPVQ 77
[Close]
BLAST of mRNA_H-paniculata_contig3434.9168.1 vs. uniprot
Match: A0A024GIK4_9STRA (Small nuclear ribonucleoprotein G n=3 Tax=Oomycota TaxID=4762 RepID=A0A024GIK4_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 1.130e-25
Identity = 47/71 (66.20%), Postives = 58/71 (81.69%), Query Frame = 1 
Query:   13 GPDLKRYMDKNLALKLNGNRIVKGVLRGYDPFMNLVLDEATDPASS--DKKMGMIIVRGNSVVQFEILDPL 219
            GPDLKRYMDK L+LKLNGNR V GVLRGYD FMN+ LDEA +  S+  + K+GM+++RGNS+VQFE L+ L
Sbjct:    6 GPDLKRYMDKRLSLKLNGNRKVSGVLRGYDQFMNVTLDEAIEEVSTTENNKIGMVVIRGNSIVQFECLEKL 76
[Close]
BLAST of mRNA_H-paniculata_contig3434.9168.1 vs. uniprot
Match: A0A4D9CNZ1_9STRA (Small nuclear ribonucleoprotein G n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CNZ1_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 1.570e-25
Identity = 46/71 (64.79%), Postives = 57/71 (80.28%), Query Frame = 1 
Query:   10 GGPDLKRYMDKNLALKLNGNRIVKGVLRGYDPFMNLVLDEATDPASSDKK-MGMIIVRGNSVVQFEILDPL 219
            GGPDLK+Y+DK LA KLNGNR V GVLRG+D FMN+VLDE  D  + DK  +G++++RGNSVVQFE L+ L
Sbjct:    5 GGPDLKKYLDKKLAFKLNGNRKVTGVLRGFDQFMNIVLDETVDDGAPDKNDIGLVVIRGNSVVQFECLEKL 75
[Close]
BLAST of mRNA_H-paniculata_contig3434.9168.1 vs. uniprot
Match: A0A3S3P9N4_9ACAR (Small nuclear ribonucleoprotein G n=1 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A3S3P9N4_9ACAR)

HSP 1 Score: 94.4 bits (233), Expect = 7.870e-24
Identity = 44/70 (62.86%), Postives = 56/70 (80.00%), Query Frame = 1 
Query:   16 PDLKRYMDKNLALKLNGNRIVKGVLRGYDPFMNLVLDEATDPASSDKK--MGMIIVRGNSVVQFEILDPL 219
            P+LK+YMDK L+LKLNGNR+V G+LRG+DPFMNLV+DEA +     +K  MGMI++RGNSVV  E LD +
Sbjct:    7 PELKKYMDKRLSLKLNGNRVVTGILRGFDPFMNLVIDEAIEETKKGEKIPMGMIVIRGNSVVLLEALDRI 76
[Close]
BLAST of mRNA_H-paniculata_contig3434.9168.1 vs. uniprot
Match: A0A6P8J6H9_ACTTE (Small nuclear ribonucleoprotein G n=2 Tax=Actiniaria TaxID=6103 RepID=A0A6P8J6H9_ACTTE)

HSP 1 Score: 94.0 bits (232), Expect = 1.090e-23
Identity = 45/70 (64.29%), Postives = 57/70 (81.43%), Query Frame = 1 
Query:   16 PDLKRYMDKNLALKLNGNRIVKGVLRGYDPFMNLVLDEATDPASSDKK--MGMIIVRGNSVVQFEILDPL 219
            P+LK+YMDK L+LKLNG R V GVLRGYDPFMNLVLDEA + AS+ +K  +GM+++RGNS+V  E LD +
Sbjct:    7 PELKKYMDKKLSLKLNGGRHVTGVLRGYDPFMNLVLDEAVEDASATEKHSIGMVVIRGNSIVTMESLDRI 76
[Close]
BLAST of mRNA_H-paniculata_contig3434.9168.1 vs. uniprot
Match: W4GJ25_9STRA (Small nuclear ribonucleoprotein G n=5 Tax=Aphanomyces TaxID=100860 RepID=W4GJ25_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 1.540e-23
Identity = 42/71 (59.15%), Postives = 56/71 (78.87%), Query Frame = 1 
Query:   13 GPDLKRYMDKNLALKLNGNRIVKGVLRGYDPFMNLVLDEATDPASSDK--KMGMIIVRGNSVVQFEILDPL 219
            GPDLKRYMDK L++KLNGNR V G+LRG+D FMN+ LD+  +  S  +  K+GM+++RGNS+VQFE LD +
Sbjct:    6 GPDLKRYMDKTLSIKLNGNRKVSGILRGFDQFMNITLDDTIEEVSQTEANKIGMVVIRGNSIVQFECLDRI 76
[Close]
BLAST of mRNA_H-paniculata_contig3434.9168.1 vs. uniprot
Match: H3G549_PHYRM (Small nuclear ribonucleoprotein G n=25 Tax=Oomycota TaxID=4762 RepID=H3G549_PHYRM)

HSP 1 Score: 93.6 bits (231), Expect = 1.540e-23
Identity = 43/71 (60.56%), Postives = 57/71 (80.28%), Query Frame = 1 
Query:   13 GPDLKRYMDKNLALKLNGNRIVKGVLRGYDPFMNLVLDEATDPASSDK--KMGMIIVRGNSVVQFEILDPL 219
            GPDLKRYMDK L+LKLNGNR V GVLRG+D FMN+ LDE  +  S+ +  ++GM+++RGNS+VQFE L+ +
Sbjct:    6 GPDLKRYMDKRLSLKLNGNRKVSGVLRGFDQFMNVTLDETVEEVSATESNRIGMVVIRGNSIVQFECLERI 76
[Close]
BLAST of mRNA_H-paniculata_contig3434.9168.1 vs. uniprot
Match: A0A484EFX9_BRELC (Small nuclear ribonucleoprotein G n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EFX9_BRELC)

HSP 1 Score: 93.2 bits (230), Expect = 4.380e-23
Identity = 43/71 (60.56%), Postives = 57/71 (80.28%), Query Frame = 1 
Query:   13 GPDLKRYMDKNLALKLNGNRIVKGVLRGYDPFMNLVLDEATDPASSDK--KMGMIIVRGNSVVQFEILDPL 219
            GPDLKRYMDK L+LKLNGNR V GVLRG+D FMN+ LDE  +  S+ +  ++GM+++RGNS+VQFE L+ +
Sbjct:   31 GPDLKRYMDKRLSLKLNGNRKVSGVLRGFDQFMNVTLDETIEEVSTTESNRIGMVVIRGNSIVQFECLERI 101
[Close]
BLAST of mRNA_H-paniculata_contig3434.9168.1 vs. uniprot
Match: A0A067C2N0_SAPPC (Small nuclear ribonucleoprotein G n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067C2N0_SAPPC)

HSP 1 Score: 92.4 bits (228), Expect = 4.430e-23
Identity = 42/71 (59.15%), Postives = 57/71 (80.28%), Query Frame = 1 
Query:   13 GPDLKRYMDKNLALKLNGNRIVKGVLRGYDPFMNLVLDEATDPASSDK--KMGMIIVRGNSVVQFEILDPL 219
            GPDLK+YMDK L +KLNG+R V GVLRG+D FMN+ L+EA +  S+ +  K+GM+++RGNS+VQFE LD +
Sbjct:    6 GPDLKKYMDKTLCIKLNGSRKVSGVLRGFDQFMNITLEEAIEEVSTTEANKLGMVVIRGNSIVQFECLDRM 76
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3434.9168.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRR0_ECTSI5.430e-4492.00Small nuclear ribonucleoprotein G n=1 Tax=Ectocarp... [more]
A0A835YWI2_9STRA4.360e-2865.75Small nuclear ribonucleoprotein G n=1 Tax=Tribonem... [more]
A0A024GIK4_9STRA1.130e-2566.20Small nuclear ribonucleoprotein G n=3 Tax=Oomycota... [more]
A0A4D9CNZ1_9STRA1.570e-2564.79Small nuclear ribonucleoprotein G n=1 Tax=Nannochl... [more]
A0A3S3P9N4_9ACAR7.870e-2462.86Small nuclear ribonucleoprotein G n=1 Tax=Dinothro... [more]
A0A6P8J6H9_ACTTE1.090e-2364.29Small nuclear ribonucleoprotein G n=2 Tax=Actiniar... [more]
W4GJ25_9STRA1.540e-2359.15Small nuclear ribonucleoprotein G n=5 Tax=Aphanomy... [more]
H3G549_PHYRM1.540e-2360.56Small nuclear ribonucleoprotein G n=25 Tax=Oomycot... [more]
A0A484EFX9_BRELC4.380e-2360.56Small nuclear ribonucleoprotein G n=1 Tax=Bremia l... [more]
A0A067C2N0_SAPPC4.430e-2359.15Small nuclear ribonucleoprotein G n=4 Tax=Saproleg... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3434contigH-paniculata_contig3434:2982..6827 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score147.5
Seed ortholog evalue2.5e-33
Seed eggNOG ortholog2880.D8LRR0
Preferred nameSNRPG
KEGG koko:K11099
KEGG Pathwayko03040,map03040
KEGG ModuleM00351,M00352,M00354,M00355,M00398
Hectar predicted targeting categoryother localisation
GOsGO:0000245,GO:0000375,GO:0000377,GO:0000387,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005682,GO:0005683,GO:0005684,GO:0005685,GO:0005686,GO:0005687,GO:0005689,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006353,GO:0006366,GO:0006369,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006810,GO:0006913,GO:0008150,GO:0008152,GO:0008334,GO:0008380,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0018130,GO:0019438,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034708,GO:0034709,GO:0034719,GO:0035770,GO:0036464,GO:0043021,GO:0043170,GO:0043186,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045495,GO:0046483,GO:0046907,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060293,GO:0065003,GO:0070013,GO:0070990,GO:0071004,GO:0071010,GO:0071011,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0097526,GO:0097659,GO:0120114,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1990234,GO:1990446,GO:1990904
EggNOG free text desc.spliceosomal snRNP assembly
EggNOG OGsKOG1780@1,KOG1780@2759
Ec32 ortholog descriptionsmall nuclear ribonucleoprotein polypeptide G
Ec32 orthologEc-08_002090.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032,ko03041
Exons2
Model size228
Cds size228
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930060.2053456-CDS-H-paniculata_contig3434:2981..31281622930060.2053456-CDS-H-paniculata_contig3434:2981..3128Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3434 2982..3128 -
1691481130.3583577-CDS-H-paniculata_contig3434:2981..31281691481130.3583577-CDS-H-paniculata_contig3434:2981..3128Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3434 2982..3128 -
1622930060.2269363-CDS-H-paniculata_contig3434:6746..68271622930060.2269363-CDS-H-paniculata_contig3434:6746..6827Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3434 6747..6827 -
1691481130.3687744-CDS-H-paniculata_contig3434:6746..68271691481130.3687744-CDS-H-paniculata_contig3434:6746..6827Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3434 6747..6827 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3434.9168.1prot_H-paniculata_contig3434.9168.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3434 2982..6827 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3434.9168.1

>prot_H-paniculata_contig3434.9168.1 ID=prot_H-paniculata_contig3434.9168.1|Name=mRNA_H-paniculata_contig3434.9168.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=76bp
MAKGGPDLKRYMDKNLALKLNGNRIVKGVLRGYDPFMNLVLDEATDPASS
DKKMGMIIVRGNSVVQFEILDPLRF*
back to top

mRNA from alignment at H-paniculata_contig3434:2982..6827-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3434.9168.1 ID=mRNA_H-paniculata_contig3434.9168.1|Name=mRNA_H-paniculata_contig3434.9168.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3846bp|location=Sequence derived from alignment at H-paniculata_contig3434:2982..6827- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGAAGGGAGGGCCGGATCTGAAGCGTTACATGGACAAGAACTTGGC
CCTGAAACTTAACGGAAACCGGATTGTAAAGGTAAGCTCCATTTCAAGAT
GCGTAGACCTGATCATTTCTCGTGATTTAGTGGACAAATGATACGAGAGT
AGGGCGAGAGGTACATGGAGACAGTAAGTACAGCGTAGACAACAGCACTT
TCAGAACGTTCCATTCTTTCGTGCTGAAGCAAGACCAAATCTTATGGGAT
CATTTTTGGGCATTTTTGAAAATGATAAATGAGCCATTTCTCATTTCCCA
TCGAAAAACCCACCTTAGACCACTTCTTATGGGACATGGAAAAATGTGAA
AAAGTGGATATTTTAAATTATCCAAGTCGACGATATTTTGCTCCGTCGGG
GGGGGGGGGAATTTATGATTATCCAAGCGGGATTTTCGGGACTTGGATCA
TTTTAATCTGAAAAACATCATGAAAGGCAGGAGCAGCATCGTCTAGGCAT
GACTCAAATGACCAGCCGCGTCGTCAGAAAACACAGCAGCATCTATCTGA
TTTTCCAAGAGTACAGACAGTGAGGTACAACAAGTCACTCGCCACACCTC
ACACACAAGCTACCCTTGTCGCAGTACACACACCCTACCATGATGGTGCC
AGTTACTGAGGATGAGGACGTGTTCGATTGGTCTGATGACGAGGATGAGA
TGTTGCTGGCTGTGTGTCAGGCAGCCACAAACCTGGTCCAGGTCATGCAC
CGAGCTGCACAGCCCACTTTACCATAGGGCCCGGTTCGATCAGCAGTTCG
TTTTCAAACTGGGGCTCATCACCTCCTGTTACGACACCCTCTCCAGATGT
TGATATCGTGCCTACCGCTGACCTATATCTCATTTGCTAACTACAGCCGG
CGTTTTCCCCGCGCTTTTCAAAACTGAGGATATAACTTTACTCCGTTCTC
CTCGCAGCAGCTACAGCCTGTCCAAGTTGGAACACCTTCAAAAATCACAG
TTTCCCATAAGAACTGGTTCTTCGATTTTTGAATTAGGTATTTTTCAATT
ATCCAAGTCCCACGAGAAGTGGCCTTATGGCGTTGGAAATGGCTCATTTC
CCACGAGCTCAAAAATCATTTCCCATCCGACCTCCCAATCTCGTGGGAAA
TGGAGCCCAAATATCACAACGCCGGGCTTTATTCGCAATTTTTGCCGCGG
AGAGTCCAACAGACAACTGACATGACAGCACAGCACAGTACAACATATGC
AACAAAGGACACACAAACACACACCACGGACCCGCGCTAGTGCTGCGATG
AAGGCAAAAGATCCGCGGTGCCTCGTTTCGTGCGCACATATCGATGCAAG
ACGGATCATTGGAATTGGGACAAGTTATTACGCTTGTGTTTGTTGCATGT
GCTACCATGTTGTGTAGTTGTTGGAGTAACAGCGCTCCCAATCATGGTAG
TTGTGTTGCGAATGGCTTGTGCCGAGAGATGGTCTAGCCAGGGTTACAGT
AACGTGTGTTGTGTGTTGTGTGCTGTGTATTTGTGGTTTTTTTATTTGAA
CTACATGCATGTCAACTCTTCTATATAAAATCCAAATACCGTTTCTCGTG
ATTGCCCAAAAATCACAAAAACCATTTCTCATTTTCAATGCCGTAAGATA
CGGTCTAATTTTGAGCAAGTATGAACCCACTCGCTCACACCTTCTGAAAT
TGTCCGCATTTTGCACGGCGGAGTGGAACTCAAGGATAGCTTACGGTGTG
GGACGGACGTTTCGTCCTGTGGATGGTGGATGGTGGTCGGCGTTGCGGAT
TTTTGTTTGGGTCGACATGTCGTCACAGCAATGATTTTGGCCCATCTGTC
TTGCACGATACGAGCTCTATTTGTGATCTATAATTCCGCAGCGGTGCAGT
ACTTTCTCTAATGGCGGTTCCTTCCTACTCCTCTCCAAAGTAGAACAGCC
TTTATTTTGGTTTTGTCGGTATGACTCAAAGCCTGAAGCTTGCCCAGGAA
CATGGACCCAGTGTTGCACGTATTTGTGGCAGCACTATGTTTTTCAATTT
TATGTGCACTGCGACCCAATGCCCAATATTCACGGTATCCACCTACGCAA
TACAGCCACTTCGATGATTTCTTCAGCCTCTACGGTGATGCTGACTCTCC
ATCAGCGCGTTTGTTGTTGATGTCGGGCCATTACAGCCATACCTGCCTCG
TGCTGTGTGAGGGTGTGTGGTGGGGTGATCTGTGCCATCTCGCCGCCTCT
GAAAAGGGTCTTAGGGTAGTCAAATCCAAAGGTGTCGACTGGTTGTGGTG
AAAATAACGGTTTTGTGGTCATCATTCATGAAGATTGCATCGCGCGTGCC
ACTACAACGGTGATATTTGATATTTGCCACCTGAGGAGTTTTCTGAATTA
CGATCCTTACAAGTACGTCAAGTGTTGGCGCCGAGTCCATTCGTCACTTG
GGTCTAATCTTCGAGCCAGATAAAATCAATTCAAGGTCTTGGCATATAGC
ATGCACCAGTAATCATCGAGCACCCACGTGCTCAGTTCGGAGTCTTATTT
CAACACCTGCTTCCGCTGTCACAGGTGGACCATGCTACCGTACAGTGTAC
AAAATATGCAGATATCTGCTCTACGATATCATGGTACAAAGGTTAATGGT
TGATACCCAAAGCAGACTTTGCTGACAGCCAAGAAGTACGTGTTCGTGCA
AAAACAAATATGAGGGCAACAGGAATGAGAGTGTTGGCCCTCGCACAAAA
AACAGGTTACAAGAAACCAGACTGAACGCTTTAAAGCAAAAAGTAATTCG
CAACGTTTTGAGCTTTAGTCTGTACTAAATCCAAGTAGTTTAAACTCGAG
ATGCAGCCATCAACGAAAAGCAAGTGAGGCTGAACCTGAATCTCTCCCTG
TCCCTCATGATGGGCTGGTGTCTTACATCGCCACAGGGGGGAAACTATTA
CTATGCAATATCTATACATAATAGTCTGCTGGCGTCCATTCGATAGTTCG
TACTCGATGATTTGATGATTTTTAGGTGTAGTAGTCGCGATGATTGATGG
TTGACAAAGTAGGTACATGTTTCCATCGTCACAGTCAGCAGGCAATCCGT
GGGCCAAGTTTGTCCTATTGTGCCTCTGTACTCTGAGTCGTATCTAGTTC
GAATTTTACCTCGATTTCGTCGATCGTTCCTGGACTGTAGCATATGTCGC
CTGCGCATTGCACCACCAACCATCCCCTGTGCAGCTACTTACCTTGATCT
CCTTTCTTCACTACTTGAAAAATATTGCAGTCTTTGTCATTTTAACTGCA
ATATACTTCTTGCTTTCTAAACGGAAATGTTCCCCCAGGTGATTCGATAT
TGTGCTCTCATGCTGCCCCTGAATTCACGCTCCTGACCATCAAACTTATT
ACGTCATATATTCAATAAAACAAAAAAAAATATCGCAAAAGTAAAGGCCT
GACTCGTGTAGTGTTGCAAGCTAACTTCGCAGTGTTGGTTGCAGTTGGCC
ATTCAAATCTTTATAACAGTTCGCGCGTGTTTTTCCTATTCTGGCTTTGC
ATGTTGCCTTGTAAGGCAGGTGTAGACCTGGAGGTTGTCGGCAGCTTTGT
TAAGTCCTTGTTGATGTGACGTTCACCGTTCACCTTTGACCTTTGACTTT
TTATCTATGAACCGTACTCCCGAATTCAACAATTCAACCTTCTTGTCAGG
GAGTCCTACGAGGGTATGACCCTTTCATGAACCTGGTATTGGATGAAGCG
ACAGACCCAGCGTCATCCGACAAGAAGATGGGGATGATCATCGTACGAGG
AAACAGCGTAGTACAATTCGAGATCTTGGACCCACTGCGGTTCTAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig3434:2982..6827-

>mRNA_H-paniculata_contig3434.9168.1 ID=mRNA_H-paniculata_contig3434.9168.1|Name=mRNA_H-paniculata_contig3434.9168.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=456bp|location=Sequence derived from alignment at H-paniculata_contig3434:2982..6827- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGAAGGGAGGGCCGGATCTGAAGCGTTACATGGACAAGAACTTGGC
CCTGAAACTTAACGGAAACCGGATTGTAAAGATGGCGAAGGGAGGGCCGG
ATCTGAAGCGTTACATGGACAAGAACTTGGCCCTGAAACTTAACGGAAAC
CGGATTGTAAAGGGAGTCCTACGAGGGTATGACCCTTTCATGAACCTGGT
ATTGGATGAAGCGACAGACCCAGCGTCATCCGACAAGAAGATGGGGATGA
TCATCGTACGAGGAAACAGCGTAGTACAATTCGAGATCTTGGACCCACTG
CGGTTCTAAGGAGTCCTACGAGGGTATGACCCTTTCATGAACCTGGTATT
GGATGAAGCGACAGACCCAGCGTCATCCGACAAGAAGATGGGGATGATCA
TCGTACGAGGAAACAGCGTAGTACAATTCGAGATCTTGGACCCACTGCGG
TTCTAA
back to top