mRNA_H-paniculata_contig3432.9165.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3432.9165.1
Unique NamemRNA_H-paniculata_contig3432.9165.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3432.9165.1 vs. uniprot
Match: A0A6H5JCU9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCU9_9PHAE)

HSP 1 Score: 352 bits (902), Expect = 2.470e-116
Identity = 170/225 (75.56%), Postives = 191/225 (84.89%), Query Frame = 1 
Query:  229 SAPAIVKGVLLDMDGTLTDSDTLHFEAYRETLAKVTPQFNGGEFITREYYDEWMSGNSNPAIVEKLFPDMPAEDQTALWKSKEDIYRKVSTKLTPLPGLLMFLETCKTAGLAMIVVTNAPRLDAVHTLKVLGLYEWFGETMVIGYECARPKPHPDPYEEGLSRLGLTADVCVAFEDSVNGVKSAVDAGLYTVGVGGAPREKLQDA-GAGLCVGNYLNSHLPVALG 900
            S PA VKG+L DMDGTLTDSDTLHFEAYRET  KVTP FNGGE I+REYYD+WMSGNSNPAIVEKLFP+M AEDQTALWK+KE++YRK+ST +TPLPGLL FL+ C++ GLAMI+VTNAPRLDAVHTL +LGL + F ETMVIGYECAR KPHPDPY EGLSRLGL AD CVAFEDSVNGV SAV AGLYT GVG   +E+L+   G G+CV +YL+S L  ALG
Sbjct:   94 SLPATVKGILFDMDGTLTDSDTLHFEAYRETFLKVTPSFNGGERISREYYDDWMSGNSNPAIVEKLFPEMLAEDQTALWKAKEEVYRKISTTMTPLPGLLKFLDCCQSEGLAMILVTNAPRLDAVHTLNILGLSDRFEETMVIGYECARAKPHPDPYLEGLSRLGLPADACVAFEDSVNGVSSAVSAGLYTFGVGEGSQERLKGVIGGGICVSDYLDSRLYAALG 318
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BLAST of mRNA_H-paniculata_contig3432.9165.1 vs. uniprot
Match: D8LK30_ECTSI (Haloacid dehalogenase-like hydrolase family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK30_ECTSI)

HSP 1 Score: 326 bits (836), Expect = 6.430e-108
Identity = 158/213 (74.18%), Postives = 179/213 (84.04%), Query Frame = 1 
Query:  265 MDGTLTDSDTLHFEAYRETLAKVTPQFNGGEFITREYYDEWMSGNSNPAIVEKLFPDMPAEDQTALWKSKEDIYRKVSTKLTPLPGLLMFLETCKTAGLAMIVVTNAPRLDAVHTLKVLGLYEWFGETMVIGYECARPKPHPDPYEEGLSRLGLTADVCVAFEDSVNGVKSAVDAGLYTVGVGGAPREKLQDA-GAGLCVGNYLNSHLPVALG 900
            MDGTLTDSDTLHFEAYRET  K+TP FNGGE I+REYYD+WMSGNSNPAIVEKLFP+M AEDQTALWK+KE++YRK+ST +T LPGLL FL+ C++ GLAMI+VTNAPRLDAVHTL +LGL + F ETMVIGYEC R KPHPDPY EGLSRL L AD CVAFEDSVNGV SAV AGLYT GVG   +E+L+   G G+CV +YL+S L  ALG
Sbjct:    1 MDGTLTDSDTLHFEAYRETFLKLTPSFNGGERISREYYDDWMSGNSNPAIVEKLFPEMLAEDQTALWKAKEEVYRKISTTMTLLPGLLEFLDGCQSEGLAMILVTNAPRLDAVHTLNILGLSDRFEETMVIGYECPRAKPHPDPYLEGLSRLDLPADACVAFEDSVNGVSSAVSAGLYTFGVGEGSQERLKGVIGGGICVSDYLDSRLHAALG 213
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BLAST of mRNA_H-paniculata_contig3432.9165.1 vs. uniprot
Match: A0A835ZE39_9STRA (HAD-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE39_9STRA)

HSP 1 Score: 261 bits (668), Expect = 1.960e-81
Identity = 135/255 (52.94%), Postives = 171/255 (67.06%), Query Frame = 1 
Query:  157 LHAREAMAS-TNSPVQQGESASMTMSAPAIVKGVLLDMDGTLTDSDTLHFEAYRETLAKVTPQFNGGEFITREYYDEWMSGNSNPAIVEKLFPDMPAEDQTALWKSKEDIYRKVSTKLTPLPGLLMFLETCKT-----AGLAMIVVTNAPRLDAVHTLKVLGLYEWFGETMVIGYECARPKPHPDPYEEGLSRLGLTADVCVAFEDSVNGVKSAVDAGLYTVGVG-GAPREKLQDAGAGLCVGNYLNSHLPVALG 900
            LHA +A A+ T +P Q          +PA +KG L DMDGTL DSD LHFEAYR+ + ++ P  NGG+ I + +Y EWMSGNSN  I  +LFPDMP   Q  +W  KE +YR++ST + PLPGL   LE C       A +A I+VTNAPRLDA HT++VLG++E FG T+VIG ECAR KPHP+PY EGL RLGL A  C+AFEDS+NG +SA  AGL+TVGV  G     L+ AGAG+C+ ++ +  L   LG
Sbjct:   44 LHATDAAATATEAPAQP---------SPAHIKGCLFDMDGTLVDSDELHFEAYRDIILEMRPDHNGGKPIDKAWYKEWMSGNSNAVITARLFPDMPLAQQEEMWDRKEALYRRISTAMAPLPGLARLLEWCDLEDDDKARIATIIVTNAPRLDARHTMEVLGIHERFGNTVVIGAECARAKPHPEPYLEGLRRLGLAARDCIAFEDSLNGCRSATAAGLFTVGVTTGLDEAALRGAGAGVCIADFTDERLWALLG 289
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BLAST of mRNA_H-paniculata_contig3432.9165.1 vs. uniprot
Match: A0A2V3J516_9FLOR (Haloacid dehalogenase-like hydrolase domain-containing protein Sgpp n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J516_9FLOR)

HSP 1 Score: 197 bits (500), Expect = 4.690e-57
Identity = 95/220 (43.18%), Postives = 139/220 (63.18%), Query Frame = 1 
Query:  244 VKGVLLDMDGTLTDSDTLHFEAYRETLAKVTPQFNGGEFITREYYDEWMSGNSNPAIVEKLFPDMPAEDQTALWKSKEDIYRKVSTK-LTPLPGLLMFLETCKTAGLAMIVVTNAPRLDAVHTLKVLGLYEWFGETMVIGYECARPKPHPDPYEEGLSRLGLTADVCVAFEDSVNGVKSAVDAGLYTVGVGGAPR-EKLQDAGAGLCVGNYLNSHLPVAL 897
            +K +L D+DGT  +SD +H+E YR+TL ++ P FNGG+ ITRE+YD  MSG  NP +V K+ P +P  +QT LW++KE  Y  V +K ++P+ GL+  ++ CK  G+   +VTNAP+   V T+  +G+ E+FG  +V+  EC  PKPHP PY   L   G++A   +AFEDS +G +SA+ AGL T+G+      E L+  GA   V +Y +  L  AL
Sbjct:   18 LKAILFDLDGTCLNSDHIHYECYRDTLLELIPSFNGGKPITREFYDSEMSGRQNPELVSKILPQLPLHEQTRLWQTKESRYEDVISKGVSPIAGLIELIKRCKQDGIITYIVTNAPKGTCVKTVSSIGITEYFGSHVVVAEECEYPKPHPAPYLRALELAGVSAKEAIAFEDSPSGTRSAIGAGLLTIGMRSTQSDETLRSFGAAFTVRDYNDPKLLSAL 237
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BLAST of mRNA_H-paniculata_contig3432.9165.1 vs. uniprot
Match: W7TRE2_9STRA (Had family hydrolase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TRE2_9STRA)

HSP 1 Score: 198 bits (504), Expect = 5.650e-57
Identity = 96/199 (48.24%), Postives = 133/199 (66.83%), Query Frame = 1 
Query:  217 SMTMSAPAIVKGVLLDMDGTLTDSDTLHFEAYRETLAKVTPQFNGGEFITREYYDEWMSGNSNPAIVEKLFPDMPAEDQTALWKSKEDIYRKVSTKLTPLPGLLMFLETCKTAGLAMIVVTNAPRLDAVHTLKVLGLYEWFGET-MVIGYECARPKPHPDPYEEGLSRLGLTADVCVAFEDSVNGVKSAVDAGLYTVGV 810
            S+ MS    +KG+  DMDGTLT+SD LHFE YR+TL K  P++N G  + R +YD+ +SG++N  IV  L P  P +    LW +KE +YR+ S  ++PLPG++  L+ C    +  ++VTNAPR++ +HTL  L L + F ++ ++IG E ARPKP PD Y EGL RLGL A  C+AFEDS +G+ SAV AG+ TV V
Sbjct:   63 SVVMSISPHIKGICFDMDGTLTNSDDLHFETYRDTLLKFAPEYNDGRPLERAFYDQKLSGSANEIIVPMLLPHWPQDRMEELWLAKEALYRERSANISPLPGVIRLLDWCTENKIGYVLVTNAPRVECLHTLHSLKLKDRFHDSKIIIGQEMARPKPFPDAYNEGLRRLGLAAKECIAFEDSFSGLASAVAAGIPTVAV 261
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BLAST of mRNA_H-paniculata_contig3432.9165.1 vs. uniprot
Match: A0A6U0VYW9_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A6U0VYW9_9STRA)

HSP 1 Score: 197 bits (501), Expect = 1.660e-55
Identity = 100/190 (52.63%), Postives = 131/190 (68.95%), Query Frame = 1 
Query:  244 VKGVLLDMDGTLTDSDTLHFEAYRETLAKVTPQFNGGEFITREYYDEWMSGNSNPAIVEKLFPDMPAEDQTALWKSKEDIYRKV-STKLTPLPGLLMFLETCKTAGLAMIVVTNAPRLDAVHTLKVLGLYEWFGETMVIGYECARPKPHPDPYEEGLSRLGLTADVCVAFEDSVNGVKSAVDAGLYTVGV 810
            ++G+L DMDGTLTDSD++HFEAY+ TLA++ P+      ITRE+YD+ MSG SN  IV K+ PD+  E Q  +W  KE+ YR++ S  +    GL  FL+ C +  L  IVVTNAPR DA+HTL +LGL+  F + +VIG EC   KP P+PY EGL +LGL+A  C+AFEDS +G KSA+ A L TV V
Sbjct:  160 LRGILFDMDGTLTDSDSVHFEAYKATLARLAPELPE---ITREFYDKEMSGQSNEIIVPKVLPDLSPEQQRQVWVQKEEEYRRLTSDSMQRFEGLDAFLQWCDSNSLKTIVVTNAPREDAMHTLTMLGLFGRFAKHVVIGMECKEAKPSPEPYLEGLRKLGLSASQCIAFEDSPSGAKSAIAAQLRTVAV 346
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BLAST of mRNA_H-paniculata_contig3432.9165.1 vs. uniprot
Match: A0A0A7JIY9_9PSED (Haloacid dehalogenase n=2 Tax=Pseudomonas parafulva TaxID=157782 RepID=A0A0A7JIY9_9PSED)

HSP 1 Score: 179 bits (455), Expect = 1.150e-50
Identity = 99/216 (45.83%), Postives = 139/216 (64.35%), Query Frame = 1 
Query:  241 IVKGVLLDMDGTLTDSDTLHFEAYRETLAKVTPQFNGGEFITREYYDEWMSGNSNPAIVEKLFPDMPAEDQTALWKSKEDIYRKVSTKLTPLPGLLMFLETCKTAGLAMIVVTNAPRLDAVHTLKVLGLYEWFGETMVIGYECARPKPHPDPYEEGLSRLGLTADVCVAFEDSVNGVKSAVDAGLYTVGVGGA-PREKLQDAGAGLCVGNYLNSHL 885
            ++  +L D+DGTLTD+DTLH +A+R+ L       + G  +T+  ++E +SG SN  + ++LFP   A    AL + KE ++R++S +L PLPGLL  L   +  GL M VVTNAPRL+A H L+ LGL E F E +++  E ARPKP P PY  GL RL   A+  +AFEDS+ GVK+AVDAG++TV +    P E+L  AGAGL + +Y +  L
Sbjct:    1 MLTALLFDLDGTLTDTDTLHLQAFRKLLHD-----HDGRELTQTQFNEQVSGRSNGLLFKELFPQADAAQCQALAERKEALFRELSPRLEPLPGLLRLLAHAEQQGLGMCVVTNAPRLNAEHMLQALGLIERF-EHVLVADELARPKPDPLPYLTGLQRLNAKAEQALAFEDSLPGVKAAVDAGIFTVALATTQPAERLLQAGAGLVIDDYQDPRL 210
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BLAST of mRNA_H-paniculata_contig3432.9165.1 vs. uniprot
Match: UPI0016491B2A (HAD-IA family hydrolase n=1 Tax=Pseudomonas xantholysinigenes TaxID=2745490 RepID=UPI0016491B2A)

HSP 1 Score: 178 bits (452), Expect = 2.830e-50
Identity = 99/216 (45.83%), Postives = 138/216 (63.89%), Query Frame = 1 
Query:  241 IVKGVLLDMDGTLTDSDTLHFEAYRETLAKVTPQFNGGEFITREYYDEWMSGNSNPAIVEKLFPDMPAEDQTALWKSKEDIYRKVSTKLTPLPGLLMFLETCKTAGLAMIVVTNAPRLDAVHTLKVLGLYEWFGETMVIGYECARPKPHPDPYEEGLSRLGLTADVCVAFEDSVNGVKSAVDAGLYTVGVGGA-PREKLQDAGAGLCVGNYLNSHL 885
            ++  +L D+DGTLTD+DTLH +A+R+ L +     + G  +T+E ++  +SG SN  +  +LFP+  A    AL + KE ++R++S  L P+PGLL  LE  +  G+ M VVTNAPRL+A H L  +GL E F   +V   E ARPKP P PY  GL RLG  A   +AFEDS+ GVK+AVDAG++TVG+    P ++L DAGA L V +Y +  L
Sbjct:    1 MLTALLFDLDGTLTDTDTLHLQAFRQLLHE-----HDGRELTQEQFNTQISGRSNGLLFAELFPEADAAQCQALAERKEALFRELSPHLEPMPGLLRLLEHAEEYGIGMCVVTNAPRLNAEHMLGAMGLDERFDHVLVAD-ELARPKPDPLPYLTGLQRLGAKAGQALAFEDSLPGVKAAVDAGIFTVGLATTQPEQRLLDAGAKLVVADYDDPRL 210
[Close]
BLAST of mRNA_H-paniculata_contig3432.9165.1 vs. uniprot
Match: A0A4Y8SG20_9PSED (HAD family hydrolase n=2 Tax=Pseudomonas TaxID=286 RepID=A0A4Y8SG20_9PSED)

HSP 1 Score: 177 bits (450), Expect = 5.590e-50
Identity = 98/216 (45.37%), Postives = 137/216 (63.43%), Query Frame = 1 
Query:  241 IVKGVLLDMDGTLTDSDTLHFEAYRETLAKVTPQFNGGEFITREYYDEWMSGNSNPAIVEKLFPDMPAEDQTALWKSKEDIYRKVSTKLTPLPGLLMFLETCKTAGLAMIVVTNAPRLDAVHTLKVLGLYEWFGETMVIGYECARPKPHPDPYEEGLSRLGLTADVCVAFEDSVNGVKSAVDAGLYTVGVGGA-PREKLQDAGAGLCVGNYLNSHL 885
            ++  +L D+DGTLTD+DTLH +A+R+ L       + G  +T+E ++  +SG SN  +  +LFP+  A    AL + KE ++R++S  L P+PGLL  LE  +  G+ M VVTNAPRL+A H L  +GL E F   +V   E ARPKP P PY  GL RLG  A   +AFEDS+ GVK+AVDAG++TVG+    P ++L DAGA L + +Y +  L
Sbjct:    1 MLTALLFDLDGTLTDTDTLHLQAFRQLLRD-----HDGRELTQEQFNTQVSGRSNGLLFAELFPEADATQCQALAERKEALFRELSPHLEPMPGLLRLLEHAEEHGIGMCVVTNAPRLNAEHMLGAMGLGERFDHVLVAD-ELARPKPDPLPYLTGLQRLGAQAGQALAFEDSLPGVKAAVDAGIFTVGLATTQPEQRLLDAGAKLVIADYDDPRL 210
[Close]
BLAST of mRNA_H-paniculata_contig3432.9165.1 vs. uniprot
Match: A0A1X6NWD3_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NWD3_PORUM)

HSP 1 Score: 175 bits (443), Expect = 4.270e-48
Identity = 106/252 (42.06%), Postives = 142/252 (56.35%), Query Frame = 1 
Query:  151 GGLHAREAMASTNSPVQQGESASMTMSAPAIVKGVLLDMDGTLTDSDTLHFEAYRETLAKVTPQFNGGEFITREYYDEWMSGNSNPAIVEKLFPDMPAEDQTALWKSKEDIY-RKVSTKLTPLPGLLMFLETCKTAGLAMIVVTNAPRLDAVHTLKVLGLYEWFGETMVIGYECARPKPHPDPYEEGLSRLGLTADVCVAFEDSVNGVKSAVDAGLYTVGVG-GAPREKLQDAGAGLCVGNYLNSHLPVALG 900
            G L  R+AMA +     QG     T+SA      VL DMDGTL   D  HFEAY +TL ++ PQFNGG+ ITRE+Y+  MSG  NP +++++ PD+  E    +  +KE  Y R+ +  +  L G    L+    AG+ + VVTNAPR    HTL    L + F   +++G ECAR KP PDPY +G   L +     +AFEDS +G+ SAV AGL T+GVG G P   L  AGA   + +Y +  L   LG
Sbjct:   27 GSLRRRDAMAGSPPISTQGG----TLSA------VLFDMDGTLVAGDDHHFEAYADTLLEMEPQFNGGKRITREFYNTRMSGRQNPVLLKEIMPDVSPERGVVIADTKERAYMRRTAGAIEALAGAAALLDVLAAAGVRLGVVTNAPREIMEHTLGEAALRDRF-PVVIVGDECARAKPFPDPYVDGCRALDVQPREAIAFEDSPSGITSAVAAGLLTIGVGTGHPPATLLAAGAAFVIHDYYDERLATVLG 267
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3432.9165.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JCU9_9PHAE2.470e-11675.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LK30_ECTSI6.430e-10874.18Haloacid dehalogenase-like hydrolase family protei... [more]
A0A835ZE39_9STRA1.960e-8152.94HAD-like domain-containing protein n=1 Tax=Tribone... [more]
A0A2V3J516_9FLOR4.690e-5743.18Haloacid dehalogenase-like hydrolase domain-contai... [more]
W7TRE2_9STRA5.650e-5748.24Had family hydrolase n=2 Tax=Monodopsidaceae TaxID... [more]
A0A6U0VYW9_9STRA1.660e-5552.63Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A0A7JIY9_9PSED1.150e-5045.83Haloacid dehalogenase n=2 Tax=Pseudomonas parafulv... [more]
UPI0016491B2A2.830e-5045.83HAD-IA family hydrolase n=1 Tax=Pseudomonas xantho... [more]
A0A4Y8SG20_9PSED5.590e-5045.37HAD family hydrolase n=2 Tax=Pseudomonas TaxID=286... [more]
A0A1X6NWD3_PORUM4.270e-4842.06Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3432contigH-paniculata_contig3432:11493..16167 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score324.3
Seed ortholog evalue5.7e-86
Seed eggNOG ortholog2880.D8LK30
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0003824,GO:0003850,GO:0004346,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019203,GO:0042578,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0050308,GO:0050309,GO:0071944
EggNOG free text desc.pseudouridine 5'-phosphatase activity
EggNOG OGsCOG0637@1,KOG2914@2759
Ec32 ortholog descriptionhaloacid dehalogenase-like hydrolase family protein
Ec32 orthologEc-06_007970.1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size1279
Cds size867
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3432.9165.1prot_H-paniculata_contig3432.9165.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3432 11547..15809 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930059.6888673-UTR-H-paniculata_contig3432:11492..115461622930059.6888673-UTR-H-paniculata_contig3432:11492..11546Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3432 11493..11546 +
1691481130.1031182-UTR-H-paniculata_contig3432:11492..115461691481130.1031182-UTR-H-paniculata_contig3432:11492..11546Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3432 11493..11546 +
1622930059.7701266-UTR-H-paniculata_contig3432:15809..161671622930059.7701266-UTR-H-paniculata_contig3432:15809..16167Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3432 15810..16167 +
1691481130.1542037-UTR-H-paniculata_contig3432:15809..161671691481130.1542037-UTR-H-paniculata_contig3432:15809..16167Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3432 15810..16167 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930059.710408-CDS-H-paniculata_contig3432:11546..118221622930059.710408-CDS-H-paniculata_contig3432:11546..11822Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3432 11547..11822 +
1691481130.1153538-CDS-H-paniculata_contig3432:11546..118221691481130.1153538-CDS-H-paniculata_contig3432:11546..11822Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3432 11547..11822 +
1622930059.725887-CDS-H-paniculata_contig3432:12348..124331622930059.725887-CDS-H-paniculata_contig3432:12348..12433Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3432 12349..12433 +
1691481130.1255977-CDS-H-paniculata_contig3432:12348..124331691481130.1255977-CDS-H-paniculata_contig3432:12348..12433Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3432 12349..12433 +
1622930059.7401109-CDS-H-paniculata_contig3432:14850..150701622930059.7401109-CDS-H-paniculata_contig3432:14850..15070Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3432 14851..15070 +
1691481130.1349397-CDS-H-paniculata_contig3432:14850..150701691481130.1349397-CDS-H-paniculata_contig3432:14850..15070Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3432 14851..15070 +
1622930059.7543607-CDS-H-paniculata_contig3432:15523..158091622930059.7543607-CDS-H-paniculata_contig3432:15523..15809Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3432 15524..15809 +
1691481130.147058-CDS-H-paniculata_contig3432:15523..158091691481130.147058-CDS-H-paniculata_contig3432:15523..15809Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3432 15524..15809 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3432.9165.1

>prot_H-paniculata_contig3432.9165.1 ID=prot_H-paniculata_contig3432.9165.1|Name=mRNA_H-paniculata_contig3432.9165.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=289bp
MIFRHRFCTIVIEALVILLGDKALAFVAPKAAGGLHAREAMASTNSPVQQ
GESASMTMSAPAIVKGVLLDMDGTLTDSDTLHFEAYRETLAKVTPQFNGG
EFITREYYDEWMSGNSNPAIVEKLFPDMPAEDQTALWKSKEDIYRKVSTK
LTPLPGLLMFLETCKTAGLAMIVVTNAPRLDAVHTLKVLGLYEWFGETMV
IGYECARPKPHPDPYEEGLSRLGLTADVCVAFEDSVNGVKSAVDAGLYTV
GVGGAPREKLQDAGAGLCVGNYLNSHLPVALGFDSTRN*
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mRNA from alignment at H-paniculata_contig3432:11493..16167+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3432.9165.1 ID=mRNA_H-paniculata_contig3432.9165.1|Name=mRNA_H-paniculata_contig3432.9165.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4675bp|location=Sequence derived from alignment at H-paniculata_contig3432:11493..16167+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCAGCACACGCACTTGACTGAGACGCCATCCGATGAACGGACGAAGGAGA
TAGTATGATATTTCGGCATCGCTTTTGTACTATAGTAATAGAAGCCCTCG
TAATTCTTCTTGGCGATAAGGCCCTTGCTTTCGTCGCACCTAAAGCAGCT
GGTGGATTACATGCCAGAGAGGCGATGGCCAGCACAAATTCTCCTGTCCA
GCAGGGCGAATCTGCTAGTATGACGATGTCGGCGCCAGCGATCGTGAAGG
GTGTGTTACTAGATATGGATGGGACGCTGACTGACAGTGATACGCTTCAT
TTTGAGGCCTACCGTGAAACTCTGGCGAAGGTAACAAGTCTCTCTGGTTA
TGATATGTTGGTTTTTCTTCTGTAAGGAACTCCCGTGCTAAAGTTTATAA
ACATGAACAAAAGATCAAGATATAGAGTACGATACAAGTCAACCTGTTTG
CTGCTTTGAAAAAATGCACAGACCTGGCAGATATCATGATAGTACTGTAT
GTAGATGGTGCGGCAACAAATGATAAAGGGAAAGCGCGGCATGTCTGCAG
TGCGTGTAACCTTCAGCACTCTCACATCCAAGCGTCCTGTACAGACAACT
AGATAATTGGAGGTTTGCTCGCTACTTTACTGCGGTAGAAAAATCAATCT
TTTTTTCTCATGTATTTCGTTTCGACCAGAATTGTACGAGGTGATACAGT
GCGTCACGTGTGTAAGTATGGTACACGTTTGCCCCTGCACGCGGTAGTAC
CCGTCATTTTGCATTGTGGCGAAAACGACCGTATCGTATGTAAGGCATAG
CTCTTACAACTCCGTTGTTTTATTACCTCGCAATTACGCATGCTTGCCTG
TGGAAGGTTACCCCTCAATTTAATGGAGGAGAGTTCATCACCCGTGAATA
CTATGATGAGTGGATGTCTGGCAACAGCAACCCCGCTATCGGTGAGATAC
CGTCGATATCACACGTCATCTGTTTTGTATTCAGATTTTCCCTGCTTATC
CCCCCCGTTCTGTGCCTGGCGGGTGAATCGAAGATTCACTTGTACCGCCA
CACGGTTGTGGTTCTGCTCGCGAGGATATTTTTGTGTGTGTCTATCATCG
TAAGCCGGTGGGCTGTGGAGAAAAAACGCACGTTTGTCATATTGGATTAC
ATATGCAGAAGAGTCCACGGACCTACGCCCGAATGGGTAGAGTAGCTCGT
GAACTGAGCATGACTGGAAGTCTACTCAGAGGTTTTTTAGTGGGTGCAAC
TCCCATACTGCCTACTTGGTTCGGCCGAACCGGGGTGGCGCCTACCCCGC
AGAGGAATAAATAACTCTGTTCTGTTAAAGGAAATGTAGAAGTACTTCGC
TAGAAATACTCAAGTATGGAAGCATTGGATAAAGGCTTTTGCCTTTGCCT
TCTGGGTATATATATATATATATAAGAGTTACATGTTTGCTCGATGAACG
GGACTGTGGACACCGTGCTGCACCGGTTTCTCGGTTCACCCGTACTCTTT
CAGATACAACCACAGTATGCATCCTTTCTGAACAGATTATATGCACACCC
TTAGATAACGACATTACACAGAAAAACTAAAGCTCAACACCCTCACACCT
TGCGGCCATATGTGTACGCTGTTAAGTCAGATGTATGCTTCGCCAACGCA
GTCAAGTTAGATGTACGCTCCACCAATACAGTGAAGAACCCAGGTGTGCG
CCGCCAACGCAGTTAGGTCAGATGTACGCTGTGTCAATAATTAATCCAGA
TAAAATGTGTGCTAACAACGCGTGTAGGTATTAGTATATGCGTTTTCTAG
GCAAACGTACGCTCTGCCAACGCAGTTTCGTCAGATGTGCGTGTTTTCAG
CGTATTTAAACTAGCTGTGTACTGCTGACACAGGCTAGATGTACACCCTC
CCAACGCACACTACAGCCAATGGATTTGAGTTACGATTACGGTTAGCGTT
CGAGTTCACGTCGGAGTTAGGCCTGCAACATACACGCAGACAGCACGGTA
CAGTTTCCCACATCAGACGATCTCCCAACATATAACGTGCCCATGGAAGG
TCGTGCGCAGTTTGGTTTGTCATGCTGTAGTGTTCAGTCTCCTGTGTGTA
ATGTAGTTATTCGAAGGGATGCATATAGTTACCATAAGCTCCCCGGTGCG
CACATAATATTTTCGATACTTTCTTTGTGCCATAAATAAAGTCACTTCTC
TTCAATTAGCTTTCGATCTGCGCAGCCAAATTTGGCGTCCGATGCATCGC
TTGAAAGGCAGAACAACAGAGAATCTGATTCACTTTAACGAGGTTCGATT
CCGAAAATCTCGGTGAAATTAATTCGGACGAAAAGTCACCCTTTTTCTTA
CCGTTTTGTGAAAGTCTCGGGTAAGGACGCCGCGGCGCACAAAATATTGT
GGAGTACGATGAAGTCCCCACAGGGCACGCCCACGTCTGCAGCGGATACG
CCGTTCCACGGGTGTGGAGTTGTGCCTCAACAAGGAATAACGATGACGGA
AAAAATGTATCAGCTAGGATTTTTTTTCTTTTTAAAAGAATCAAAACTTG
AGTAATGTGGCAAATTATGACCCTTGTTGGGCCGTTTGTTTTTTGTACAC
CGTGCGCACATCCCGTGGATTCGCAGAATTACGCGAATGTTTGAGGTCCA
AGTAAAAAATATGCGGGATTCTAAAAATGCAAGAAATAAAACTATCCGAG
ACCGCTATTTGTTCAGTCATTCAAAACTTTTTTTTAAGTATCGATCTGTG
ATGTAGAACGATAATCCAATCCATCGGCAATGCATCAGTGCGACCGAATC
GAGCAGGCAGTGCGAAGCGCCAGGCGAATGCTTTATCACGAGGTCAACGT
CCCTCTTCCTGCTGGTGAGGAGACCTCACCAGAGGCACCGCCGCAGATCG
AAAAATACTCGTTCTGGCGCCATCTCTGTTCAAAATCGAGCCAAATTTTC
CACTGGATAATGATTGTAACATGTGTAAATTAAAGCATATGACGAGTAAA
ACACGCGGGGAAAATACACAGAAATTCATTTTGACCGCCGATTGACATGT
TTTTGCCCCGACACACAGCCCTACAAATCAGCCCCCACTTCTTGCACCTG
TGTACACACGACACTTCCACCAATGCCTGGTTCTTCGTCTCAGGTTGAGC
AAACCAGATGTTGGCGAGAGACGCCTTCGTCACTTGCTACAGAAAATCGT
TCACAATGTACGAGTACTTGATACGTACATGCGCAAGGAGTAACTCGTGA
ACCTTGTGAACGTCAGCTTGTACTTATCGTTGAGTGTACCCGTTTTTTGT
GGATTGGCCGTTTTGCTGACCATCCCGTGGTGTTACCCGTTTGTGTACTT
GCAACCAGTGGAAAAGCTTTTTCCCGATATGCCTGCCGAAGACCAAACAG
CTTTGTGGAAATCGAAGGAAGACATTTATAGGAAAGTGTCCACCAAGTTG
ACGCCTCTGCCTGGATTGTTGATGTTCCTGGAGACATGTAAGACGGCGGG
GCTTGCCATGATCGTGGTTACCAACGCGCCGCGATTAGATGCCGTCCACA
CGCTCAAGGTTTTGGGGCTTTATGAATGGTGAGAATATTCCGTATCCATC
CGAGAGAATATGCCATCTTTATGCTGGGGTTGCCTGTAGATCTTGGGAAC
CTGTCGCGTAGGTTTGGATATTTTGCTGTCGTGTATGATGAGTGTCTGAA
CGACAAGTCGGCGAGAATTATCGAGGGAGGCGACCACTGCTGCTTTTGCA
GGATGATGTGATCTGCATTTGTCTGTGCTGCCTGTACGTAGCATGTTCAG
CAGCATCCGTGCCAAATATTCGGGTAATCAAGGAAGGAGTATGTGTTCGT
CTGTTTTTATCTGACCATGAACCATCTTTCATCTACAGTACTGTATATGA
TCTGGGATAAAACAGGATGTAAGGATTCTACGTTGGTTCGCTCTTTTCCT
TGTTGTATACCCAGCACGTACGATAAGTAGTATGTTGAACTCAGCTGAAC
AGCTCTATTTTGCTCTCGCACTGCGGCGCAGGTTTGGTGAGACTATGGTC
ATCGGCTACGAGTGTGCCCGGCCAAAGCCACATCCCGACCCTTACGAGGA
AGGCCTGTCCCGACTTGGACTGACAGCTGATGTCTGCGTTGCGTTTGAGG
ACAGTGTAAACGGCGTGAAATCGGCGGTGGATGCAGGACTCTACACGGTT
GGTGTTGGTGGTGCTCCCCGTGAGAAATTGCAGGACGCCGGTGCTGGGTT
GTGCGTGGGCAACTATTTGAACAGTCATCTGCCTGTTGCGCTTGGATTTG
ACTCTACCAGGAACTAAGGTGTTAGCCGTTGCGATTTCGGGCTGTGGTGT
ATCTGTGCCCCGTGCCCATCAAGCGCTGATTCTCTCGCAGTATTGGAAAA
ATAATCCACTCACCGTAGGCTACAAGGTGCAACGCATGGGTTACTCCCGA
TTCGAGTACTACTGCGAGTTGGTAGAAGGTTTTTAATTACTTGCGACATA
GGAGCGACTTATCTTAATTTTTTTTTGTAGGAATTAGAAAGAAAAAGTAC
TGGCAGCGGGGATTGAACCTATGAAATCATGCATAGTATGGTATGCCCCC
GTCAGTCAGGCCAGGTTTAATCAATCGAAAATAATTAAAGCTGTGTATCG
GTAGAGAAAAACGATACGATAAATA
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Coding sequence (CDS) from alignment at H-paniculata_contig3432:11493..16167+

>mRNA_H-paniculata_contig3432.9165.1 ID=mRNA_H-paniculata_contig3432.9165.1|Name=mRNA_H-paniculata_contig3432.9165.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1734bp|location=Sequence derived from alignment at H-paniculata_contig3432:11493..16167+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATATTTCGGCATCGCTTTTGTACTATAGTAATAGAAGCCCTCGTAAT
TCTTCTTGGCGATAAGGCCCTTGCTTTCGTCGCACCTAAAGCAGCTGGTG
GATTACATGCCAGAGAGGCGATGGCCAGCACAAATTCTCCTGTCCAGCAG
GGCGAATCTGCTAGTATGACGATGTCGGCGCCAGCGATCGTGAAGGGTGT
GTTACTAGATATGGATGGGACGCTGACTGACAGTGATACGCTTCATTTTG
AGGCCTACCGTGAAACTCTGGCGAAGATGATATTTCGGCATCGCTTTTGT
ACTATAGTAATAGAAGCCCTCGTAATTCTTCTTGGCGATAAGGCCCTTGC
TTTCGTCGCACCTAAAGCAGCTGGTGGATTACATGCCAGAGAGGCGATGG
CCAGCACAAATTCTCCTGTCCAGCAGGGCGAATCTGCTAGTATGACGATG
TCGGCGCCAGCGATCGTGAAGGGTGTGTTACTAGATATGGATGGGACGCT
GACTGACAGTGATACGCTTCATTTTGAGGCCTACCGTGAAACTCTGGCGA
AGGTTACCCCTCAATTTAATGGAGGAGAGTTCATCACCCGTGAATACTAT
GATGAGTGGATGTCTGGCAACAGCAACCCCGCTATCGGTTACCCCTCAAT
TTAATGGAGGAGAGTTCATCACCCGTGAATACTATGATGAGTGGATGTCT
GGCAACAGCAACCCCGCTATCGTGGAAAAGCTTTTTCCCGATATGCCTGC
CGAAGACCAAACAGCTTTGTGGAAATCGAAGGAAGACATTTATAGGAAAG
TGTCCACCAAGTTGACGCCTCTGCCTGGATTGTTGATGTTCCTGGAGACA
TGTAAGACGGCGGGGCTTGCCATGATCGTGGTTACCAACGCGCCGCGATT
AGATGCCGTCCACACGCTCAAGGTTTTGGGGCTTTATGAATGTGGAAAAG
CTTTTTCCCGATATGCCTGCCGAAGACCAAACAGCTTTGTGGAAATCGAA
GGAAGACATTTATAGGAAAGTGTCCACCAAGTTGACGCCTCTGCCTGGAT
TGTTGATGTTCCTGGAGACATGTAAGACGGCGGGGCTTGCCATGATCGTG
GTTACCAACGCGCCGCGATTAGATGCCGTCCACACGCTCAAGGTTTTGGG
GCTTTATGAATGGTTTGGTGAGACTATGGTCATCGGCTACGAGTGTGCCC
GGCCAAAGCCACATCCCGACCCTTACGAGGAAGGCCTGTCCCGACTTGGA
CTGACAGCTGATGTCTGCGTTGCGTTTGAGGACAGTGTAAACGGCGTGAA
ATCGGCGGTGGATGCAGGACTCTACACGGTTGGTGTTGGTGGTGCTCCCC
GTGAGAAATTGCAGGACGCCGGTGCTGGGTTGTGCGTGGGCAACTATTTG
AACAGTCATCTGCCTGTTGCGCTTGGATTTGACTCTACCAGGAACTAAGT
TTGGTGAGACTATGGTCATCGGCTACGAGTGTGCCCGGCCAAAGCCACAT
CCCGACCCTTACGAGGAAGGCCTGTCCCGACTTGGACTGACAGCTGATGT
CTGCGTTGCGTTTGAGGACAGTGTAAACGGCGTGAAATCGGCGGTGGATG
CAGGACTCTACACGGTTGGTGTTGGTGGTGCTCCCCGTGAGAAATTGCAG
GACGCCGGTGCTGGGTTGTGCGTGGGCAACTATTTGAACAGTCATCTGCC
TGTTGCGCTTGGATTTGACTCTACCAGGAACTAA
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