mRNA_H-paniculata_contig34310.9162.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig34310.9162.1
Unique NamemRNA_H-paniculata_contig34310.9162.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig34310.9162.1 vs. uniprot
Match: D8LTL7_ECTSI (Heavy metal translocating P-type ATPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTL7_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 8.490e-12
Identity = 35/67 (52.24%), Postives = 47/67 (70.15%), Query Frame = 1 
Query:   91 KAEVRHDANVVSAAQIAKSVSGLGYKCQHMKMVGPRSEESGPWKRGGSSSVLEVEVTGMSCTSCSGK 291
            +AEV++D   ++   IA+ VSGLGYKCQH++ V  R+ ++G        + LEVEVTGMSCTSCSGK
Sbjct:  418 QAEVKYDTEQLAPEDIARGVSGLGYKCQHLRTV--RTSKAGXXXXXXRPNTLEVEVTGMSCTSCSGK 482
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34310.9162.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTL7_ECTSI8.490e-1252.24Heavy metal translocating P-type ATPase n=2 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig34310contigH-paniculata_contig34310:680..1663 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score69.3
Seed ortholog evalue1.1e-09
Seed eggNOG ortholog2880.D8LTL7
KEGG rclassRC00002
KEGG koko:K17686
KEGG TC3.A.3.5
KEGG ReactionR00086
KEGG Pathwayko01524,ko04016,map01524,map04016
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cation-transporting ATPase activity
EggNOG OGsCOG2217@1,KOG0207@2759
EC3.6.3.54
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons2
Model size294
Cds size291
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930059.338213-CDS-H-paniculata_contig34310:681..8791622930059.338213-CDS-H-paniculata_contig34310:681..879Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34310 682..879 -
1691481129.936077-CDS-H-paniculata_contig34310:681..8791691481129.936077-CDS-H-paniculata_contig34310:681..879Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34310 682..879 -
1622930059.3529058-CDS-H-paniculata_contig34310:1570..16631622930059.3529058-CDS-H-paniculata_contig34310:1570..1663Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34310 1571..1663 -
1691481129.9558697-CDS-H-paniculata_contig34310:1570..16631691481129.9558697-CDS-H-paniculata_contig34310:1570..1663Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34310 1571..1663 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig34310.9162.1prot_H-paniculata_contig34310.9162.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig34310 682..1663 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig34310.9162.1

>prot_H-paniculata_contig34310.9162.1 ID=prot_H-paniculata_contig34310.9162.1|Name=mRNA_H-paniculata_contig34310.9162.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=97bp
DKIFGIQELLLRRPEHEPSARLLTDAHAGNKAEVRHDANVVSAAQIAKSV
SGLGYKCQHMKMVGPRSEESGPWKRGGSSSVLEVEVTGMSCTSCSGK
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mRNA from alignment at H-paniculata_contig34310:680..1663-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig34310.9162.1 ID=mRNA_H-paniculata_contig34310.9162.1|Name=mRNA_H-paniculata_contig34310.9162.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=984bp|location=Sequence derived from alignment at H-paniculata_contig34310:680..1663- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACAAAATATTTGGTATCCAGGAGCTGCTTCTACGTCGGCCCGAGCATGA
ACCATCCGCGAGACTCCTTACGGATGCTCACGCAGGAAACAAGGTGGTCG
AGACGAGAGATGTCACCTGGGAGGCGCCAGCTACTACGCTAACACCGTTG
CCGTTGCCTGCGGTACTAAACCCTTCCCGTGGTCCCATGATAGCCCTTAG
TTTGTTCGATGGTCAAGTTCGTGTGTTTTTCTCGTTTACATTTTTGAACG
ATCTATTTACTCTTGTACTTTTGCAGTAATATAGAAGGCTTTGAAAATTC
GAATCCTGGGATCGAAAATAACGCTATAGCGGTTCTTAGCAGATAAGAAT
TGCGCCTGGAGAGGACAAGGGGGTTGAGGTGGATGGATTTCGTAGGTGAA
AGATTTCTCGGCCGTATTTATTCCGCAACGTCGGAAAGAACGATTAGCTA
GCCAACCATTGGAAATGCCTCTGTCAGGAACAAAGCTCCGTCCTCCCGAG
AACTATATGTGTGGTCTATAGCCTAATAGTTACGGCATGCGAAGCATGAG
TACACCCCGTTGTTGATTAGATGCTACTAGTGTGTGTATACAAGTGCATA
TTATAGCCAGCTGCATATAAGCTCAACATGGGTACAACGGAGTTATGACA
CGAGCTTCAGAGTTATTGTTCAACTGACTGTGGCAGGGTTAATTTACGAC
AGTACTGAGAATGTCAGTTCTCTCTCTCATTTGTTTCGTGTCTCTTCATG
CCGCGTTGCTTGTATGATAATCGCCCAATCTCAGGCGGAAGTTCGGCACG
ACGCTAACGTGGTGTCGGCTGCCCAGATAGCCAAGAGCGTCTCCGGCCTG
GGCTACAAGTGCCAGCATATGAAGATGGTCGGGCCGAGGTCCGAAGAGTC
CGGGCCTTGGAAAAGGGGTGGGTCGTCTTCGGTCCTGGAGGTGGAGGTGA
CGGGTATGTCGTGCACGTCTTGCAGCGGGAAGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig34310:680..1663-

>mRNA_H-paniculata_contig34310.9162.1 ID=mRNA_H-paniculata_contig34310.9162.1|Name=mRNA_H-paniculata_contig34310.9162.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=582bp|location=Sequence derived from alignment at H-paniculata_contig34310:680..1663- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACAAAATATTTGGTATCCAGGAGCTGCTTCTACGTCGGCCCGAGCATGA
ACCATCCGCGAGACTCCTTACGGATGCTCACGCAGGAAACAAGGACAAAA
TATTTGGTATCCAGGAGCTGCTTCTACGTCGGCCCGAGCATGAACCATCC
GCGAGACTCCTTACGGATGCTCACGCAGGAAACAAGGCGGAAGTTCGGCA
CGACGCTAACGTGGTGTCGGCTGCCCAGATAGCCAAGAGCGTCTCCGGCC
TGGGCTACAAGTGCCAGCATATGAAGATGGTCGGGCCGAGGTCCGAAGAG
TCCGGGCCTTGGAAAAGGGGTGGGTCGTCTTCGGTCCTGGAGGTGGAGGT
GACGGGTATGTCGTGCACGTCTTGCAGCGGGAAGGCGGAAGTTCGGCACG
ACGCTAACGTGGTGTCGGCTGCCCAGATAGCCAAGAGCGTCTCCGGCCTG
GGCTACAAGTGCCAGCATATGAAGATGGTCGGGCCGAGGTCCGAAGAGTC
CGGGCCTTGGAAAAGGGGTGGGTCGTCTTCGGTCCTGGAGGTGGAGGTGA
CGGGTATGTCGTGCACGTCTTGCAGCGGGAAG
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