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Homology
BLAST of mRNA_H-paniculata_contig3431.9161.1 vs. uniprot
Match: D7FZM4_ECTSI (CRAL-TRIO domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D7FZM4_ECTSI) HSP 1 Score: 171 bits (433), Expect = 1.190e-41 Identity = 127/299 (42.47%), Postives = 164/299 (54.85%), Query Frame = 3
Query: 42 MVNTWRMEGLGRRRXXXXXXXXXXXXXXXXXAVVLGLHMAWVALEAGMDAVLPLWMLLPDSCNGLGLTATHTGMVLSIAIAVLAIPRNCGSAAILRRTGRSPIRTLQAAAIVQVVLAILLSGLATSSWTSSNKESN--SLLAMVAVILSLGRASGIFARHALVKLLEIAMG-----TYINNRHRPGEGRTATAAAAATGLSKVVGVLMAGAVFARAVGAGAKPGVVLFRLAAVGFLGLYLATMFMDVTEGTVAGGMGSWGAXXXXXXXGRDSAVWLSVCDFVDE--------NPPPAGY 893
+V TWRM+G XXXXXX AVVL LH+ WVALEA +A+LPLWML P GLG +A TG+VL+IA+A LA+PR AA+LR RSP+RTL+AA VQV+ A LSG+ATS+WT + S + A+ A + AS + AR AL LL +A+G A G+S+ +GVL G VF+RAV AGA GVV FRL A F+G+YLAT+ + + GT AG W G WL++CD V+E +PP + Y
Sbjct: 704 IVRTWRMDG---------PPPXXXXXXETTAAVVLALHLVWVALEAATEALLPLWMLSPGGHGGLGFSAADTGVVLAIAVAALALPRYFSPAALLRVAARSPVRTLRAATSVQVIAATFLSGVATSAWTWTGPLSRDATFAAVTAAAAASRAASTMLARPALGNLLSVALGHAGXXXXXXXXXXXXXSADGVLLAVTAGVSQSIGVLAMGVVFSRAVAAGADAGVVSFRLVAAAFVGVYLATLLVSSSSGT-AGSRARW----RCGGGGGSGGPWLAMCDCVEEATAASTVSSPPMSSY 988
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 173.7 |
| Seed ortholog evalue | 1.3e-40 |
| Seed eggNOG ortholog | 2880.D7FZM4 |
| Hectar predicted targeting category | signal anchor |
| EggNOG free text desc. | macromolecule localization |
| EggNOG OGs | KOG1471@1,KOG1471@2759 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Exons | 3 |
| Model size | 1659 |
| Cds size | 900 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3431.9161.1 >prot_H-paniculata_contig3431.9161.1 ID=prot_H-paniculata_contig3431.9161.1|Name=mRNA_H-paniculata_contig3431.9161.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=300bp
MVNTWRMEGLGRRRSSSSVDDEASGTVTTAAAVVLGLHMAWVALEAGMDA
VLPLWMLLPDSCNGLGLTATHTGMVLSIAIAVLAIPRNCGSAAILRRTGR
SPIRTLQAAAIVQVVLAILLSGLATSSWTSSNKESNSLLAMVAVILSLGR
ASGIFARHALVKLLEIAMGTYINNRHRPGEGRTATAAAAATGLSKVVGVL
MAGAVFARAVGAGAKPGVVLFRLAAVGFLGLYLATMFMDVTEGTVAGGMG
SWGAGAAGGAGGRDSAVWLSVCDFVDENPPPAGYYGDVGVGTGRVVKES* back to topmRNA from alignment at H-paniculata_contig3431:12289..16386+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig3431.9161.1 ID=mRNA_H-paniculata_contig3431.9161.1|Name=mRNA_H-paniculata_contig3431.9161.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4098bp|location=Sequence derived from alignment at H-paniculata_contig3431:12289..16386+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGGCGTGCGGGCTACTTCAGCAATCTCAATTGCGTGCGTATGGTGAAT
ACGTGGAGGATGGAGGGCTTGGGCCGTCGAAGATCGTCGAGCTCTGTAGA
TGATGAGGCATCGGGCACGGTGACAACGGCGGCTGCTGTTGTATTGGGCT
TGCACATGGCCTGGGTGGCGTTGGAAGCGGGGATGGACGCTGTGCTTCCC
CTGTGGATGCTGCTGCCTGGTGAGCGAGCGTAAAGGCGTAAGAAAAAATT
TTAAAAAAAAATTAAAAGTTAGGACTTCACAATTTCCTGACAAGTTTTGA
GAAGACTTGAGAACTGTCTGAAAGATGCCAAATTTCCATCAGTTTTTTCT
GCGCGACGACTACAAACCAAACCAGATATTTAATGGGTTTTTTTACGTGT
GTGTATGTTTGTGCGTGTGATAGGAGCGAGATAATTATCTTTTTTTTGGT
CGCGAGGATGGCGTGTGGCAAAGAGATGCTTGCGCCACTTACACCGGTAT
AAGCGAACGCGGTGGTGCAGGGGAAGTGGTGAGGGAGGCTCCGGAGAGGG
GTGGTGATGTTTCGGATGCTAGATGGTGGAGTAAAAGGGAGATGGTTTCA
GTCTCTCTCGATTAAGTGTCGATCGTACACAGCATGAACATCACGTGGAG
GCTGTACGTGTTATTTTTTTGGCTGTGCGTTTATGCTCTTTACAGCTCGC
CCTTTGCTTCGCGGGATGAAAAGGAAAATACAGACTTGTTCATCTTCCAG
ATTTAGTACGGATTCCTCCGTAAGCTTTTCGCCAGAACGCAATCGATACA
CCCACGACGTCACGCCCAATACAGCTTGGCTATGAAAGGTAGATGGACGT
CGTCACTCGAATCGCGTTCACTTTTTTTTTTTTTCGCATCGATATTTTCA
CCTCCCGATCCTTGAAAAAAATATTTCCTGTTCGCAGACAGCTGTAACGG
GCTGGGGTTGACAGCGACGCACACCGGCATGGTTTTGTCGATCGCGATTG
CTGTGCTTGCCATTCCACGCAATTGCGGTTCGGCGGCTATCCTGCGCAGG
ACGGGACGATCGCCGATTCGAACGTTGCAGGCCGCAGCAATTGTGCAGGT
GTGTTGGTGAAAGTACGACTGAGTCTCTAGATTGACCTTGGGTCTGTAGA
GAAGGCGCTCTCTACCCATTAGACCATACTAACTCTATGGTGTACTGAAT
AATGACCGCTTTATCTATCAACGTCGACAATCGGGTTTCCTTTTTCAATT
CCGAGGCCGAGGCGACGCCTCTCTCAAGCGTTGCTTAAATATAATTGTCT
TTCTCTAGGCACTTGAGTTCGACTTGACTAGGATTTCTCACTCAAATTAC
GGGCCCTCACTGCGCAACTCGGCGTCTTCGTCACAAAAACACTCCTTGTG
CACTCGGGTTCGAATCGGCGATGAACTTTGTATTTCGAAAAGGCGGTCGG
GTCTACTTGATAAAACCATAGAGTCGACGATTTTCTCTACAGCTGCCAAA
CAATACGAGCGGGGCCATTTTTGGATGCAGCCGTTTTCCAACTTCTCGCC
TCGCTATTTGAAGCCTTGTAACCTGAGCGGCCTTCGTAAGCGTGTTCCCT
CGTGTGAGCGCGAGCGAGTTTCAGGAGTTCAGTTGGAGTGCTCAGAAGAG
CTGGCTGCCTGCCGGATTGTTTCCAATGGTGACTAGATATTATTAATATC
GTGTTGTACACTGAACAAAAGGGGAAAAAGCGCCTGTAGTTTCCCTATTG
CTACTAGTAATGCCTCCCCCCCCCCCCCGCCCTGAGACCTTTATGTACCG
GGGAATTTATTTTCATCCTACAAGCAAAAACGATCCAGCACCATATCGCG
CACTTTTGGCACGCTTCCAGAATGGCAGCTTTTACCTCGACAGCCGATTT
TGGACGGGCGGTTTTTGAATGTTAGTCATTCTGTCCCCATCGCTTCGTAC
TTCAGCGTGACGCAATGCCTCCAAGTACAGTCAAACTCCATAGTCATACG
CCATCGTCCATTTTTTTTTTTTTTATCAATGTCTTGTCATTTGCCAAACA
GAGGGGTCATGAACATCGGTTCATCTTAGACCGTTTCTCGTGTGCGCCGG
AAGGTTCATTTTCGAGACCTGTAGCGCAGATACATAGATAGAGTGGCATA
TGTAGGTCAGAGGAGGTCATTAGTTGCACCATGACTAAGTGATGAGTACT
ATAATTTCCATAATTAAGATCGTACCTGAAAGCACCTAATATGTTATTTG
CTTGCTGTGGCTAAATGGCTGGGTTATAAGTCTGTTAGTTCTCCCTAAGT
GGTTCTAATTTTGCTGGACCATATATGAGTATGTCTATCTCGGATACATT
GCAGGCTTAACAAACCTCAGCATGTACAAGTTATGTTCTTACACTTTTTT
TTCTTTTCTTTTCTTTTTTCAGTTTGTGGATAATAACAGACCCGATTCAG
CAGCTTGAAAAATGCCAAGCATACGTACGTTGTGTTTTACACTTATTTAT
CTCCTCTACTTGTGACTCGCTCTGTAACAATAGGGTACATTTTCCAAACC
GTGTTCCCGTAGTGTGGATGCTGTCCCGCTTGTGAAGCTGTCCTTGTCAA
GAGGCGCTTGTGCTGATGTCTTCATCTTGTAGTTGGTGGTAGAGTTCGTC
GTCCTTGATGTATTTAGTTTTGGTCCTCAAACTGGTGTTTGTAGCTCTCA
CGTATCATGTATTTCGGTTTTCATCAGTCTCGATCATCGTATTAACACCA
ACATCTTTCCGAAATCATCGTACATACCCCCCCCCCCCTACCGCCGAACC
CCCGTGGCGAAAAAAACAGGTGGTCCTCGCGATATTATTGTCAGGGCTGG
CAACATCATCCTGGACTTCGTCGAACAAAGAGAGCAACTCTCTCTTGGCG
ATGGTCGCTGTCATCCTATCCCTCGGAAGGGCTTCAGGGATCTTCGCCCG
CCACGCTCTAGTCAAGCTGCTCGAGATAGCGATGGGCACCTACATCAACA
ATAGGCATCGCCCTGGAGAAGGAAGGACGGCGACGGCGGCAGCAGCGGCC
ACTGGACTTTCTAAAGTAGTGGGCGTTTTGATGGCGGGGGCAGTATTTGC
GCGAGCTGTAGGAGCCGGGGCCAAGCCCGGTGTTGTGTTGTTCCGCTTAG
CGGCTGTCGGATTCCTGGGGCTGTATCTTGCGACCATGTTCATGGATGTG
ACGGAGGGCACGGTCGCCGGAGGTATGGGGAGTTGGGGGGCAGGGGCGGC
AGGAGGAGCGGGGGGGAGGGACTCAGCGGTGTGGCTTAGCGTATGTGATT
TTGTTGACGAAAACCCGCCGCCTGCGGGGTATTACGGCGATGTAGGGGTG
GGGACGGGGAGAGTGGTCAAGGAGTCATGAGACTCCACTCTGTCGGGTAT
CTCTTTGCCTACTTGAGCTGTTATTGGCTTATTCCCCATGTAGGTCGCGT
TCGTCCTATTGGAGCTGCGATTGGTATATATTTTTTCTCTGGAGGTTAAG
TAAGGATTCATAAGACCCATCTGTTGCCCGGCTCGATTTCTTCGTGTATG
TAGTGTTTCTGTCGGGGGGGTTTGCTGGCGATTTTCCGCCGCGTAGAATG
GTTGTCCCCACTTGCTGTTTATCAGGGCGGTATGTTGCGTCAACGGGACA
TGACTACCCTCTCTGTACTGAATTGACACCATCTCTTGGTTTCAAGGAGG
ATTGTCTCTAAGCTGTCTTGGGCTCTGTCTATGTGCCTTGCCAGATCCTG
TGCTGTAACTCTGTGTTTTGACTCTTTTGGTTTTGCCCTCGTCATGGGAT
GGAGTAATGTTGGGTTGAGTACTTCTATTGATTTTGTGTTGTTTTAGCAT
CGAGCGTAATCGTTTTGCGGTTCATTTCTGACCGACTCGATCGGTGTAGA
TTTCAGGTACAGACAGGTAACGTTAGCAATGCATTATAATAACAGCGAGT
AACGCGGTACATATCCCAACGTGTATTACGGTTTGTGGACATTCAAACGT
ACGTGTTTATTAGGGCCGTTGTAAACATGAAAAAAAAAGCCCTTTTTTCG
CTCGTTTTTTTCCTTTCCTCATTTTTCTCCTTCAGATAACACGCTGAG back to topCoding sequence (CDS) from alignment at H-paniculata_contig3431:12289..16386+ >mRNA_H-paniculata_contig3431.9161.1 ID=mRNA_H-paniculata_contig3431.9161.1|Name=mRNA_H-paniculata_contig3431.9161.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1800bp|location=Sequence derived from alignment at H-paniculata_contig3431:12289..16386+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGAATACGTGGAGGATGGAGGGCTTGGGCCGTCGAAGATCGTCGAG
CTCTGTAGATGATGAGGCATCGGGCACGGTGACAACGGCGGCTGCTGTTG
TATTGGGCTTGCACATGGCCTGGGTGGCGTTGGAAGCGGGGATGGACGCT
GTGCTTCCCCTGTGGATGCTGCTGCCTGATGGTGAATACGTGGAGGATGG
AGGGCTTGGGCCGTCGAAGATCGTCGAGCTCTGTAGATGATGAGGCATCG
GGCACGGTGACAACGGCGGCTGCTGTTGTATTGGGCTTGCACATGGCCTG
GGTGGCGTTGGAAGCGGGGATGGACGCTGTGCTTCCCCTGTGGATGCTGC
TGCCTGACAGCTGTAACGGGCTGGGGTTGACAGCGACGCACACCGGCATG
GTTTTGTCGATCGCGATTGCTGTGCTTGCCATTCCACGCAATTGCGGTTC
GGCGGCTATCCTGCGCAGGACGGGACGATCGCCGATTCGAACGTTGCAGG
CCGCAGCAATTGTGCAGACAGCTGTAACGGGCTGGGGTTGACAGCGACGC
ACACCGGCATGGTTTTGTCGATCGCGATTGCTGTGCTTGCCATTCCACGC
AATTGCGGTTCGGCGGCTATCCTGCGCAGGACGGGACGATCGCCGATTCG
AACGTTGCAGGCCGCAGCAATTGTGCAGGTGGTCCTCGCGATATTATTGT
CAGGGCTGGCAACATCATCCTGGACTTCGTCGAACAAAGAGAGCAACTCT
CTCTTGGCGATGGTCGCTGTCATCCTATCCCTCGGAAGGGCTTCAGGGAT
CTTCGCCCGCCACGCTCTAGTCAAGCTGCTCGAGATAGCGATGGGCACCT
ACATCAACAATAGGCATCGCCCTGGAGAAGGAAGGACGGCGACGGCGGCA
GCAGCGGCCACTGGACTTTCTAAAGTAGTGGGCGTTTTGATGGCGGGGGC
AGTATTTGCGCGAGCTGTAGGAGCCGGGGCCAAGCCCGGTGTTGTGTTGT
TCCGCTTAGCGGCTGTCGGATTCCTGGGGCTGTATCTTGCGACCATGTTC
ATGGATGTGACGGAGGGCACGGTCGCCGGAGGTATGGGGAGTTGGGGGGC
AGGGGCGGCAGGAGGAGCGGGGGGGAGGGACTCAGCGGTGTGGCTTAGCG
TATGTGATTTTGTTGACGAAAACCCGCCGCCTGCGGGGTATTACGGCGAT
GTAGGGGTGGGGACGGGGAGAGTGGTCAAGGAGTCATGAGTGGTCCTCGC
GATATTATTGTCAGGGCTGGCAACATCATCCTGGACTTCGTCGAACAAAG
AGAGCAACTCTCTCTTGGCGATGGTCGCTGTCATCCTATCCCTCGGAAGG
GCTTCAGGGATCTTCGCCCGCCACGCTCTAGTCAAGCTGCTCGAGATAGC
GATGGGCACCTACATCAACAATAGGCATCGCCCTGGAGAAGGAAGGACGG
CGACGGCGGCAGCAGCGGCCACTGGACTTTCTAAAGTAGTGGGCGTTTTG
ATGGCGGGGGCAGTATTTGCGCGAGCTGTAGGAGCCGGGGCCAAGCCCGG
TGTTGTGTTGTTCCGCTTAGCGGCTGTCGGATTCCTGGGGCTGTATCTTG
CGACCATGTTCATGGATGTGACGGAGGGCACGGTCGCCGGAGGTATGGGG
AGTTGGGGGGCAGGGGCGGCAGGAGGAGCGGGGGGGAGGGACTCAGCGGT
GTGGCTTAGCGTATGTGATTTTGTTGACGAAAACCCGCCGCCTGCGGGGT
ATTACGGCGATGTAGGGGTGGGGACGGGGAGAGTGGTCAAGGAGTCATGA back to top
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