mRNA_H-paniculata_contig34266.9154.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig34266.9154.1 vs. uniprot
Match: D7FJ93_ECTSI (Signal recognition particle subunit SRP72 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJ93_ECTSI) HSP 1 Score: 114 bits (286), Expect = 3.750e-28 Identity = 60/67 (89.55%), Postives = 63/67 (94.03%), Query Frame = 1
Query: 1 GKIDPTKPIPKPDPERWIARSHRAYGKRGRKRNKFVGAQGSGDGAAKDTAKLDAHAKAQAKKEASVK 201
GKIDPTKP+PKPDPERWI RSHRAYGKRGRKRNKFVGAQGSGDGAAKDTAKLDA A+AQAK+ AS K
Sbjct: 610 GKIDPTKPVPKPDPERWIPRSHRAYGKRGRKRNKFVGAQGSGDGAAKDTAKLDALARAQAKQAASEK 676
BLAST of mRNA_H-paniculata_contig34266.9154.1 vs. uniprot
Match: A0A835YI58_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YI58_9STRA) HSP 1 Score: 78.2 bits (191), Expect = 2.720e-15 Identity = 39/57 (68.42%), Postives = 45/57 (78.95%), Query Frame = 1
Query: 1 GKIDPTKPIPKPDPERWIARSHRAYGKRGRKRNKFVGAQGSGDGAAKDTAKLDAHAK 171
GK+DPTKP PDPERWI R R+Y KRGRKRNK +GAQG+GDGA K+ AKLD A+
Sbjct: 631 GKLDPTKPALLPDPERWIPRKQRSYAKRGRKRNKLLGAQGAGDGAKKEEAKLDVAAR 687
BLAST of mRNA_H-paniculata_contig34266.9154.1 vs. uniprot
Match: A0A7S2V151_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V151_9STRA) HSP 1 Score: 72.8 bits (177), Expect = 7.100e-15 Identity = 39/64 (60.94%), Postives = 51/64 (79.69%), Query Frame = 1
Query: 1 GKIDPTKPIPKPDPERWIARSHRAYGKRGRK-RNKFVGAQGSGDGAAKDTAKLDAHAKAQAKKE 189
G+ DP KP PDPERW+ R R+Y +RGR+ R++F GAQG+G+G AKD AKLDA+A++QAKKE
Sbjct: 35 GRYDPRKPT-FPDPERWVPRKQRSYNRRGRRGRHRFTGAQGAGEGTAKDAAKLDAYARSQAKKE 97
BLAST of mRNA_H-paniculata_contig34266.9154.1 vs. uniprot
Match: A0A7R9UBM0_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UBM0_9STRA) HSP 1 Score: 74.3 bits (181), Expect = 9.530e-15 Identity = 39/68 (57.35%), Postives = 51/68 (75.00%), Query Frame = 1
Query: 1 GKIDPTKPIPKPDPERWIARSHRAYGKRGRKRNKFVGAQGSGDGAAKDTAKLDAHAKAQAKKEASVKS 204
GKI +P PKPDPERW+ R R+Y KRG++RN+F+GAQGSGDGA KD AKLD A+ ++E ++S
Sbjct: 115 GKIHADRP-PKPDPERWLPRKQRSYNKRGKRRNQFLGAQGSGDGAQKDAAKLDVAARVAERREKGIES 181
BLAST of mRNA_H-paniculata_contig34266.9154.1 vs. uniprot
Match: A0A7S2SJY1_9STRA (Signal recognition particle subunit SRP72 n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SJY1_9STRA) HSP 1 Score: 73.2 bits (178), Expect = 1.570e-13 Identity = 45/65 (69.23%), Postives = 51/65 (78.46%), Query Frame = 1
Query: 1 GKIDPTKPIPKPDPERWIARSHRAYGKRGRK-RN-KFVGAQGSGDGAAKDTAKLDAHAKAQAKKE 189
GK DP P PDPERWI + R+Y KRGRK RN KF GAQG+G+GAAKD AKLDA+A+AQAKKE
Sbjct: 618 GKYDPKHPAT-PDPERWIPKKLRSYNKRGRKNRNAKFSGAQGTGEGAAKDAAKLDAYARAQAKKE 681
BLAST of mRNA_H-paniculata_contig34266.9154.1 vs. uniprot
Match: A0A812S6I0_SYMMI (SRP72 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812S6I0_SYMMI) HSP 1 Score: 72.8 bits (177), Expect = 2.130e-13 Identity = 40/61 (65.57%), Postives = 46/61 (75.41%), Query Frame = 1
Query: 1 GKIDPTKPIPKPDPERWIARSHRAYGKRGRK-RNKFVGAQGSGDGAAKDTAKLDAHAKAQA 180
GK DP +P KPDPERW+ HR+Y KRGRK R+KFVG QGSGDGA KD KLD +A+ QA
Sbjct: 443 GKYDPARPS-KPDPERWLPLKHRSYNKRGRKNRHKFVGGQGSGDGAQKDMQKLDVYARTQA 502
BLAST of mRNA_H-paniculata_contig34266.9154.1 vs. uniprot
Match: W7TLA7_9STRA (Srp72 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TLA7_9STRA) HSP 1 Score: 72.0 bits (175), Expect = 4.010e-13 Identity = 38/63 (60.32%), Postives = 50/63 (79.37%), Query Frame = 1
Query: 1 GKIDPTKPIPKPDPERWIARSHRAYGKRGRK-RNKFVGAQGSGDGAAKDTAKLDAHAKAQAKK 186
GK D ++P P PDPERWIA++ R+Y KRG+K R KFVGAQGSG+GAA+D A LD ++ +A+K
Sbjct: 648 GKYDASRPGPPPDPERWIAKNQRSYNKRGKKGRGKFVGAQGSGNGAARDAAMLDVASRVEAEK 710
BLAST of mRNA_H-paniculata_contig34266.9154.1 vs. uniprot
Match: A0A7S0GD07_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GD07_9STRA) HSP 1 Score: 68.6 bits (166), Expect = 4.560e-13 Identity = 40/63 (63.49%), Postives = 49/63 (77.78%), Query Frame = 1
Query: 1 GKIDPTKPIPKPDPERWIARSHRAYGKRGRK-RNKFVGAQGSGDGAAKDTAKLDAHAKAQAKK 186
GK + ++P KPDPERWI + R+Y KRGRK RN+FVGAQGSG G KD AKLDA A+A+AK+
Sbjct: 48 GKYNLSRPN-KPDPERWIPKKQRSYNKRGRKARNRFVGAQGSGMGTEKDAAKLDAFARAEAKR 109
BLAST of mRNA_H-paniculata_contig34266.9154.1 vs. uniprot
Match: A0A4D9D6J5_9STRA (MFS domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D6J5_9STRA) HSP 1 Score: 70.1 bits (170), Expect = 1.930e-12 Identity = 37/63 (58.73%), Postives = 50/63 (79.37%), Query Frame = 1
Query: 1 GKIDPTKPIPKPDPERWIARSHRAYGKRGRK-RNKFVGAQGSGDGAAKDTAKLDAHAKAQAKK 186
GK D ++P P PDPERWIA++ R+Y KRG+K + KFVGAQGSG+GAAKD A LD ++ +A++
Sbjct: 1098 GKYDASRPGPPPDPERWIAKNQRSYNKRGKKGKAKFVGAQGSGNGAAKDAAMLDVASRVEAER 1160
BLAST of mRNA_H-paniculata_contig34266.9154.1 vs. uniprot
Match: T0PMW8_SAPDV (Signal recognition particle subunit SRP72 n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0PMW8_SAPDV) HSP 1 Score: 67.0 bits (162), Expect = 2.310e-11 Identity = 41/63 (65.08%), Postives = 46/63 (73.02%), Query Frame = 1
Query: 10 DPTKPIPKPDPERWIARSHRAYGKRGRKRNKFVGAQGSGDGAAKDTAKLDAHAKAQAKKEASV 198
+P P+ KPDPERWI R R+ G R R RNKFVGAQGSG G+ KD AKLDA A+A AKK A V
Sbjct: 563 NPLIPLLKPDPERWIPRKQRSRGNR-RNRNKFVGAQGSGMGSQKDAAKLDAAARAAAKKVAPV 624 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34266.9154.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 19
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig34266.9154.1 >prot_H-paniculata_contig34266.9154.1 ID=prot_H-paniculata_contig34266.9154.1|Name=mRNA_H-paniculata_contig34266.9154.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=68bp GKIDPTKPIPKPDPERWIARSHRAYGKRGRKRNKFVGAQGSGDGAAKDTAback to top mRNA from alignment at H-paniculata_contig34266:265..984- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig34266.9154.1 ID=mRNA_H-paniculata_contig34266.9154.1|Name=mRNA_H-paniculata_contig34266.9154.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=720bp|location=Sequence derived from alignment at H-paniculata_contig34266:265..984- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig34266:265..984- >mRNA_H-paniculata_contig34266.9154.1 ID=mRNA_H-paniculata_contig34266.9154.1|Name=mRNA_H-paniculata_contig34266.9154.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=408bp|location=Sequence derived from alignment at H-paniculata_contig34266:265..984- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |