mRNA_H-paniculata_contig3426.9153.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3426.9153.1
Unique NamemRNA_H-paniculata_contig3426.9153.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig3426.9153.1 vs. uniprot
Match: D8LJ76_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ76_ECTSI)

HSP 1 Score: 273 bits (698), Expect = 1.500e-85
Identity = 205/390 (52.56%), Postives = 245/390 (62.82%), Query Frame = 1
Query:   10 MPPG--YEGEKVGRSSQGSDDDMAEFNRNVGKVIETLRHDYSRMFVEELDFDIYTEDLQLIDPSGVVLSGIKPYQRLFASLRFLRQVLINDVSTSFRLSYDASRQQVRICWHFVLDARA-AERPLHVDGISVYSLNSVGIVRKHAIETIIVNGTPVKPPFAQAWINLPSWLGEGLQGGAVRAPGLSSSIGLAPFRARTGREGVDTLGVFGGGTGEDRAIRSNLVSLNPAPSSDGLEGKRLRAQGYRSAVGVXXXXXXXXXXXXEDVEKRSRVSSPSEGDWPSARHDAQNGDEGEQDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLWPI-LDTPWGCETSFDCSASQVCCDFVVVKFCCSNGIMQPLPGDVIPVYIPIPGRGRIELD 1167
            MP G  YEGEK  +  +    +  EFN N+GKVI+TLR DY+ M  E L+F+IYT DLQL DPSGVVL+G+  Y+R+F + RF+R+ L++DVST FRLSYD SRQQVRI WH VLDA     RP+H+DG SVY L++ G+VR+H +ETIIVNGTPVKPPFAQAW+ LPSW+ +G  GG   APG+ S +  +      G +  +  G    G   +R I  +L     A +  GL G R        A  +  XXXXXXXXXX                                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXX  +WPI    P  CETSFDC+   VCCD VVVK CCSNG+MQ  PGD+IP  IPIPGRGR ELD
Sbjct:    1 MPAGEIYEGEKNEKEKR----EQTEFNTNLGKVIDTLREDYATMLDEPLNFEIYTPDLQLRDPSGVVLTGLPAYKRMFGTFRFVRKTLVHDVSTVFRLSYDGSRQQVRITWHLVLDATPMVVRPVHLDGTSVYGLSTEGLVRRHDVETIIVNGTPVKPPFAQAWMQLPSWVTQGRSGGVAGAPGMIS-VSSSSGDVWGGMDDFNRSGRRRSGGNFERRIPVDLSGT--AMAFQGLAGVR--------AASITRXXXXXXXXXXXXXXXXXXXXXXX---------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGMWPIDYKGPLACETSFDCTGGYVCCDLVVVKICCSNGVMQRKPGDLIPSLIPIPGRGRTELD 354          
BLAST of mRNA_H-paniculata_contig3426.9153.1 vs. uniprot
Match: A0A6H5JCH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCH5_9PHAE)

HSP 1 Score: 261 bits (667), Expect = 6.690e-79
Identity = 210/441 (47.62%), Postives = 251/441 (56.92%), Query Frame = 1
Query:    1 RTPMPPG--YEGEKVGRSSQGSDDDMAEFNRNVGKVIETLRHDYSRMFVEELDFDIYTEDLQLIDPSGVVLSGIKPYQRLFASLRFLRQVLINDVSTSFRLSYDASRQQ---------------------------------------VRICWHFVLDARA-AERPLHVDGISVYSLNSVGIVRKHAIETIIVNGTPVKPPFAQAWINLPSWLGEGLQGGAVRAPGLSSSIGLAPFRARTGREGVDTLGVFGGGTGEDRAIRS---------NLVSLNPAPSSDGLEGKRLRAQGYRSAVGVXXXXXXXXXXXXEDVEKRSRVSSPSEGDWPSARHDAQNGDEGEQDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLWPI-LDTPWGCETSFDCSASQVCCDFVVVKFCCSNGIMQPLPGDVIPVYIPIPGRGRIELD 1167
            R+PMP G  YEGEK  +  +    + AEFN N+GKVI+TLR DY  M  E L+FDIYT DLQL DPSGV+L+G+  Y+R+F + RF+R+ L++DVST FRLSYD SRQQ                                       VR+ WH VLDA     RP+H+DG SVY L++ G+VR+H +ETIIVNGTPVKPPFAQAW+ LPSW+ +G  GG   APG++S       R     +  D  G   GG  E R              L  +  A  +   +G  L A G+ ++   XXXXXXXXXXXX                                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXX  +WPI    P  CETSFDC+   VCCD VVVK CCSNG+MQ  PGD+IP  IPIPGRGR ELD
Sbjct:   86 RSPMPAGEIYEGEKKEKEKR----EQAEFNTNLGKVIDTLREDYPTMLDEPLNFDIYTPDLQLRDPSGVILTGLPAYKRMFGTFRFVRKTLVHDVSTVFRLSYDGSRQQDDEQLLVHPCEMQPWTGRNDWPSVIGSVGNNAPSSRGRVVRVTWHLVLDATPMVARPVHLDGTSVYGLSTEGLVRRHDLETIIVNGTPVKPPFAQAWMQLPSWVTQGRSGGVAGAPGMTSVSSSGGVRGEI--DDFDRSGRRSGGKFERRIPMDLSGTAMAFQGLAEVRAASITRRRKGL-LAAVGFDASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGMWPIDYKGPLACETSFDCTGGYVCCDLVVVKICCSNGVMQRKPGDLIPSLIPIPGRGRTELD 519          
BLAST of mRNA_H-paniculata_contig3426.9153.1 vs. uniprot
Match: A0A6H5KRU5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRU5_9PHAE)

HSP 1 Score: 219 bits (558), Expect = 4.780e-63
Identity = 146/378 (38.62%), Postives = 198/378 (52.38%), Query Frame = 1
Query:   76 EFNRNVGKVIETLRHDYSRMFVEELDFDIYTEDLQLIDPSGVVLSGIKPYQRLFASLRFLRQVLINDVSTSFRLSYDASRQQVRICWHFVLDARAAERPLHVDGISVYSLNSVGIVRKHAIETIIVNGTPVKPPFAQAWINLPSWLGEGL----QGGAVRAPGLSSSIGLAP---FRARTGREGVDTLGVFGGGTGEDRAIRSNLV---SLNPAPSSDGLE--GKRLRAQGYRSAVGVXXXXXXXXXXXXEDVEKRSRVSSPSEGDWPSARHDAQN--GDEGEQDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLWPILDTPWGCETSFDCSASQVCCDFVVVKFCCSNGIMQPLPGDVIPVYIPIPGRGRIELD 1167
            +F  N+GKVI TLR DY R+F +   FDI+TE+++L DP+GV   GI  Y+R+FA+LRF RQ  +ND +T+FRL+YD S+QQVR+ W+ VL  +A +RP++VDGIS Y +NS G+  +H +ET++VNG  V+PPFA AWINLP+W+  G      G     P   + IG AP   F  + G E  D +G        D  +R + +   S      +DG+   G              XXXXXXXXXXXX                    +++A    G +G +                                           CETS+DC+   VCCDFV++K CCSNGI QP  G++IP  +PIPGRGR E D
Sbjct:  133 DFEVNLGKVISTLREDYPRIFFDPPAFDIFTEEIELRDPTGVAFRGISNYKRVFATLRFFRQTFMNDATTTFRLTYDWSKQQVRVTWNVVLQLKARQRPIYVDGISAYHINSDGLAHRHDLETVVVNGRAVEPPFAYAWINLPAWVSRGAVAKPSGAGAALPTPHAVIGGAPTQLFEQQQG-EAEDAVGAMFDAARTDSELRGDYMQALSTVLMMDTDGVSESGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNNAGGWFGSKGAE-----------------------------------------LACETSWDCTGGMVCCDFVLLKVCCSNGIRQPKFGELIPSLVPIPGRGRNEND 468          
BLAST of mRNA_H-paniculata_contig3426.9153.1 vs. uniprot
Match: A0A7S1ZVV7_9STRA (Hypothetical protein (Fragment) n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZVV7_9STRA)

HSP 1 Score: 117 bits (293), Expect = 4.360e-26
Identity = 60/144 (41.67%), Postives = 85/144 (59.03%), Query Frame = 1
Query:   64 DDMAEFNRNVGKVIETLRHDYSRMFVEELDFDIYTEDLQLIDPSGVVLSGIKPYQRLFASLRFLRQVLI--NDVSTSFRLSYDASRQQVRICWHFVLDARA----AERPLHVDGISVYSLNSVGIVRKHAIETIIVNGTPVKPP 477
            D+  EF  N+G+ ++ LR DY  M V   DF+IY +D+++IDPSGV L G+  Y++ F+ +  +        +   +FRL YDA R+ +R+ W+  L  R         LHVDGISVY LN  GIV +H +E I+VN  PVK P
Sbjct:   94 DERREFEINLGRAVDRLRKDYPDMLVANPDFEIYHDDIEVIDPSGVKLHGLGNYEKAFSFIHAVINFFYCKEESGLTFRLHYDAERRNIRVSWNAFLVPRTIYGGVRNKLHVDGISVYELNREGIVMRHKLERILVNNVPVKEP 237          
BLAST of mRNA_H-paniculata_contig3426.9153.1 vs. uniprot
Match: A0A7S2VCF0_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VCF0_9STRA)

HSP 1 Score: 113 bits (282), Expect = 1.700e-25
Identity = 61/146 (41.78%), Postives = 89/146 (60.96%), Query Frame = 1
Query:   52 QGSDDDMAEFNRNVGKVIETLRHDYSRMFVEELDFDIYTEDLQLIDPSGVVLSGIKPYQRLFASLR-FLRQVLINDVSTSFRLSYDASRQQVRICWHFVLDARAA-ERPLHVDGISVYSLN-SVGIVRKHAIETIIVNGTPVKPPF 480
            QG  D+  E+  NVGK ++ LR D   +  E+ DF IY +++++IDPSGV L+G+K Y+  FA  + F+R          FR+ YD +R  +RI W+ VL  +    RPLHVDGIS Y L+   G V +H IE +++N +PV PP+
Sbjct:   66 QGIADERKEYQMNVGKAMDVLRSDMRDILTEKPDFSIYDKNIEVIDPSGVRLNGLKQYKSAFAFFQTFIRFWFSEKSGLQFRMVYDFARCSIRISWNVVLVPKVPLGRPLHVDGISYYQLDRKSGKVVEHKIENLLINNSPVAPPY 211          
BLAST of mRNA_H-paniculata_contig3426.9153.1 vs. uniprot
Match: A0A7S4A516_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A516_9STRA)

HSP 1 Score: 115 bits (288), Expect = 2.730e-25
Identity = 52/153 (33.99%), Postives = 91/153 (59.48%), Query Frame = 1
Query:   73 AEFNRNVGKVIETLRHDYSRMFVEELDFDIYTEDLQLIDPSGVVLSGIKPYQRLFASLRFLRQVLINDVSTSFRLSYDASRQQVRICWHFVLDARAAERPLHVDGISVYSLNSVGIVRKHAIETIIVNGTPVKPPFAQAWINLPSWLGEGLQG 531
            +EF  N+G+ I+ LR D       EL +DIY +++QL DPSGV   G++ Y++ F  +R  R+V+I+ V  +F+L YD S++ +++ W+    AR + +  +VD  S + L+  G + KH ++ + V G P+ PP++  W+    ++  GL G
Sbjct:   78 SEFELNLGRAIDALRSDVPAFADRELSWDIYADNVQLADPSGVQTRGLQNYKQFFGVIRMFRRVMIDKVDITFKLRYDWSKKIIKVTWYSKWYARGSSKAAYVDATSAFHLDEQGKIFKHVVDRVQVGGRPLSPPYSVGWLAFREYVLAGLDG 230          
BLAST of mRNA_H-paniculata_contig3426.9153.1 vs. uniprot
Match: A0A0M0JBU2_9EUKA (Uncharacterized protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JBU2_9EUKA)

HSP 1 Score: 115 bits (288), Expect = 4.450e-25
Identity = 100/373 (26.81%), Postives = 151/373 (40.48%), Query Frame = 1
Query:   79 FNRNVGKVIETLRHDYSRMFVEELDFDIYTEDLQLIDPSGVVLSGIKPYQRLFASLRFLRQVLINDVSTSFRLSYDASRQQVRICWHFVLDARAAERPL-----------HVDGISVYSLNSVGIVRKHAIETIIVNGT-PVKPPFAQAWINLPSWLGEGLQGGAVRAPGLSS-SIGLAPFRARTGREGVDTLGVFGGGTGEDRAIRSNLVSLNPAPSSDGLEGKRLRAQGYRSAVGVXXXXXXXXXXXXEDVEKRSRVSSPSEGDWPSARHDAQNGDEGEQDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLWPILDTPWGCETSFDCSASQVCCDFVVVKFCCSNGIMQP-----LPGDVIPVYIPIP 1143
            F  N G+ I+ LRHDY R+F E  D  I+T++++L DPSG  L+G K Y+R+F +LRFLR+  + D     RL  D   + +R+ W+  L  R     L           H+DG+SVY L+  G++R+H +E I++ G  P+  P   A+    +W   G        P     +  L  F   +   G    G  G  + + R       +  P  S+   E    RA   R+                ED  K+ R+      D  + +   ++G                                      L+  L  P  CETS+DC A  VCCD +    CC+ G++ P     + G +    IPIP
Sbjct:   79 FKLNQGRAIDVLRHDYPRLFTERPDMSIFTDNIELHDPSGKRLAGKKQYERVFDALRFLRRTTMQDAQVGIRLVADD--KSIRVRWNAKLWMRDPATGLTTLVNGEPALVHIDGVSVYDLDKDGLIRQHRLENIVLTGQEPLATPIQLAF----AWPATGYATPQAAVPFFQPLADALLNFGFSSTSSGASEAGTEGTESEDGRRAAPTRRAPPPQASASDDETPLERAARERA----------------EDAAKQQRLR-----DLRTPKTAPKSG------------------------------------VDLFG-LTGPQSCETSYDCDAPMVCCDLLFATVCCTGGLLIPTADRRMQGSLQRQAIPIP 387          
BLAST of mRNA_H-paniculata_contig3426.9153.1 vs. uniprot
Match: A0A1Z5KJP1_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KJP1_FISSO)

HSP 1 Score: 106 bits (265), Expect = 2.890e-23
Identity = 55/142 (38.73%), Postives = 86/142 (60.56%), Query Frame = 1
Query:   64 DDMAEFNRNVGKVIETLRHDYSRMFVEELDFDIYTEDLQLIDPSGVVLSGIKPYQRLFASLR-FLRQVLINDVSTSFRLSYDASRQQVRICWHFVLDARAA-ERPLHVDGISVYSLNSV-GIVRKHAIETIIVNGTPVKPPF 480
            D+  EF  ++G+ ++TLR D   +  E  DF IY ++L+++DPSGV L G++ Y+   A L+ F R           R+ YD  R  +RI WH VL  +    RPLHVDGIS+Y+L+   G++ +H IE +++N +P +PP+
Sbjct:   56 DERQEFQIHLGRAMDTLRKDMQNILTELPDFSIYHDELEVLDPSGVQLIGLEKYKSAIAFLQTFCRFWFAPKPVVQHRMVYDFCRSSIRIAWHAVLVPKVPWGRPLHVDGISLYTLDPTSGLISQHKIEKLVINQSPAQPPY 197          
BLAST of mRNA_H-paniculata_contig3426.9153.1 vs. uniprot
Match: A0A7S2UHH9_9STRA (Hypothetical protein n=2 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UHH9_9STRA)

HSP 1 Score: 110 bits (276), Expect = 3.850e-23
Identity = 118/396 (29.80%), Postives = 172/396 (43.43%), Query Frame = 1
Query:   55 GSDDDMAEFNRNVGKVIETLRHDYSRMFVEELDFDIYTEDLQLIDPSGVVLSGIKPYQRLFASLRFLRQVLINDVST--SFRLSYDASRQQVRICWHFVLDAR----AAERPLHVDGISVYSLNSV-GIVRKHAIETIIVNGTPVKPPFAQAWINLPSWLGEGLQGGAVRAPGLSSSIGLAPFRARTGREGVDTLGVFGGGTGEDRAIRSNLVSLNPAPS----SDGLEGKR-LRAQGYRSAVGVXXXXXXXXXXXXEDVEKRS--------RVSSPSEGDWPSARHDAQNGD-EGEQDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLWPILDTPWGCETSFDCSASQVCCDFVVVKFCCSNGIM--QPLP-GDVIPV-------YIPIPGR 1149
            G  D+  EF   +GK ++TLR DY  M  +  D+ IY  DL+++DPSGV L G+K Y+  F  +  +         +  +FRL YD +R  +R+ W+  L  +      +  LHVDGISVY +    G++ +H +E +++N   V+P                            S I  A  RA T  EG   LGV G     +   R NL+ +    S    SD ++G + L A    S  G             E +EK++        +  +P E        +AQ    E +Q+       XXXXXX                  S++   DT   CE+++DC+  QVCCDF V K CCS+G+M    LP G + PV       Y P+ GR
Sbjct:  107 GIGDERREFEMKLGKAVDTLRKDYPAMLTKNPDYTIYHGDLEVVDPSGVKLHGLKNYKNAFMLIHAVINFFYCPERSLITFRLVYDQARNNIRVSWNAELVPKLIFGGVKTTLHVDGISVYVMEKTSGLITQHRVERLLINDAHVRP---------------------------KSGIFYALTRAVTDMEGPPVLGVDGAPFHFE--FRQNLLPIPSGKSLFDASDSIKGVQPLYAMSSTSDGGSDGSMAFDE----EALEKKNISRKKRGLKALTPDE----YMEFEAQTRQLELQQEQKANDIAXXXXXXTALEGEKKKSNFLGKMMGSVFK--DT---CESNYDCARPQVCCDFKVKKVCCSSGMMVSNRLPRGAMAPVRVVAKAGYPPLDGR 460          
BLAST of mRNA_H-paniculata_contig3426.9153.1 vs. uniprot
Match: A0A7S4A2R8_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A2R8_9STRA)

HSP 1 Score: 103 bits (258), Expect = 3.390e-22
Identity = 49/136 (36.03%), Postives = 77/136 (56.62%), Query Frame = 1
Query:   76 EFNRNVGKVIETLRHDYSRMFVEELDFDIYTEDLQLIDPSGVVLSGIKPYQRLFASLRFLRQVLINDVSTSFRLSYDASRQQVRICWHFVLDARAAERPLHVDGISVYSLNSVGIVRKHAIETIIVNGTPVKPPFA 483
            E+  N GK I+ L  D +R    ELD+ IY+E +QL DP+GV   G+  Y+R F  +R  R ++++DVS   RL  D +  ++ ICW+       A++P+ +D +S YSL+  G V  H ++ + +NG    P  A
Sbjct:   96 EYELNRGKAIDALNADATRFADAELDWSIYSEQIQLADPTGVRARGLANYKRFFQLVRLFRSLMVDDVSVRHRLRVDDANGRIVICWYSTWRTSMAKKPIQIDAVSYYSLDDRGFVEAHEVDRVEINGKRRSPETA 231          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3426.9153.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJ76_ECTSI1.500e-8552.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JCH5_9PHAE6.690e-7947.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KRU5_9PHAE4.780e-6338.62Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S1ZVV7_9STRA4.360e-2641.67Hypothetical protein (Fragment) n=3 Tax=Ditylum br... [more]
A0A7S2VCF0_9STRA1.700e-2541.78Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S4A516_9STRA2.730e-2533.99Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A0M0JBU2_9EUKA4.450e-2526.81Uncharacterized protein n=1 Tax=Chrysochromulina t... [more]
A0A1Z5KJP1_FISSO2.890e-2338.73Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A7S2UHH9_9STRA3.850e-2329.80Hypothetical protein n=2 Tax=Attheya septentrional... [more]
A0A7S4A2R8_9STRA3.390e-2236.03Hypothetical protein (Fragment) n=2 Tax=Pelagomona... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3426contigH-paniculata_contig3426:10971..15644 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score273.9
Seed ortholog evalue1.2e-70
Seed eggNOG ortholog2880.D8LJ76
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Uncharacterized conserved protein (DUF2358)
EggNOG OGs2CYHV@1,2S4H3@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-02_005050.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size1170
Cds size1161
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3426.9153.1prot_H-paniculata_contig3426.9153.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3426 10971..15635 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930058.5042188-CDS-H-paniculata_contig3426:10970..114711622930058.5042188-CDS-H-paniculata_contig3426:10970..11471Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3426 10971..11471 -
1691481129.497626-CDS-H-paniculata_contig3426:10970..114711691481129.497626-CDS-H-paniculata_contig3426:10970..11471Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3426 10971..11471 -
1622930058.5241172-CDS-H-paniculata_contig3426:11654..120021622930058.5241172-CDS-H-paniculata_contig3426:11654..12002Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3426 11655..12002 -
1691481129.512722-CDS-H-paniculata_contig3426:11654..120021691481129.512722-CDS-H-paniculata_contig3426:11654..12002Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3426 11655..12002 -
1622930058.541-CDS-H-paniculata_contig3426:13129..132581622930058.541-CDS-H-paniculata_contig3426:13129..13258Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3426 13130..13258 -
1691481129.524724-CDS-H-paniculata_contig3426:13129..132581691481129.524724-CDS-H-paniculata_contig3426:13129..13258Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3426 13130..13258 -
1622930058.558388-CDS-H-paniculata_contig3426:15452..156351622930058.558388-CDS-H-paniculata_contig3426:15452..15635Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3426 15453..15635 -
1691481129.5322714-CDS-H-paniculata_contig3426:15452..156351691481129.5322714-CDS-H-paniculata_contig3426:15452..15635Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3426 15453..15635 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930058.5741074-UTR-H-paniculata_contig3426:15635..156441622930058.5741074-UTR-H-paniculata_contig3426:15635..15644Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3426 15636..15644 -
1691481129.5396512-UTR-H-paniculata_contig3426:15635..156441691481129.5396512-UTR-H-paniculata_contig3426:15635..15644Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3426 15636..15644 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3426.9153.1

>prot_H-paniculata_contig3426.9153.1 ID=prot_H-paniculata_contig3426.9153.1|Name=mRNA_H-paniculata_contig3426.9153.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=387bp
MPPGYEGEKVGRSSQGSDDDMAEFNRNVGKVIETLRHDYSRMFVEELDFD
IYTEDLQLIDPSGVVLSGIKPYQRLFASLRFLRQVLINDVSTSFRLSYDA
SRQQVRICWHFVLDARAAERPLHVDGISVYSLNSVGIVRKHAIETIIVNG
TPVKPPFAQAWINLPSWLGEGLQGGAVRAPGLSSSIGLAPFRARTGREGV
DTLGVFGGGTGEDRAIRSNLVSLNPAPSSDGLEGKRLRAQGYRSAVGVGR
GEGGGGGAGAEDVEKRSRVSSPSEGDWPSARHDAQNGDEGEQDTSNNNNN
NDDSKENNENNDNNENNAKKKKKKSLWPILDTPWGCETSFDCSASQVCCD
FVVVKFCCSNGIMQPLPGDVIPVYIPIPGRGRIELD*
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mRNA from alignment at H-paniculata_contig3426:10971..15644-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3426.9153.1 ID=mRNA_H-paniculata_contig3426.9153.1|Name=mRNA_H-paniculata_contig3426.9153.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4674bp|location=Sequence derived from alignment at H-paniculata_contig3426:10971..15644- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGACGCCAATGCCTCCGGGATACGAGGGTGAAAAAGTAGGGAGGAGCAG CCAGGGTAGCGACGACGACATGGCGGAATTTAATCGCAACGTGGGCAAGG TTATAGAAACTCTACGGCATGACTACAGTCGCATGTTTGTCGAGGAGTTG GACTTCGACATCTACACTGAGGATTTGCAGCTGATCGACCCGGTAAGAGG TAGAGGTGTTGGTAAGGGCTGAGTAGGAGACATACCATGATGGCATACCC GGTTGGTTCGCTTCTTTGGGTTGTTGTTGTTGTGTGTGTAGGTGCTCCAT CTAGCGGTTTCTGTTGTTGTAATGAAACGCTACCGGCCGACTGCACATGA GGCAAGGTTAAACGTGGTGTACTGAGTTACTGAGTTACTGACCGTCGCCA CTTATCTCTTCAGCTGTGCGGATTCGAGGAAGCTCCCAGGAAACAGCGAA ACCTTAATAACCTGTGCTTGAAGTATATCGAAAATTCGTTCTTCCTGTTT CCTCCTTCTCTCTCGCAATGGTGATATTCTATGGAGTGGAGAAATCGTTG CGCTATTTTGCACAGGCAGAATATTGCGGCTGGTGGACTTAGGGTTGTCC CGCCTGCAGATATTTAGACTGAATAGTCTTTTACCGACAGGCCATAGACG ACAGTACAGTCGGTACAAAATTGCAAAATTGTGCAATTCACGGGCAGTGG TCCGACTAAATACTTGTCCTCTCTGGCTTGACTTCGGTGTATCACCTTCC GAGTGGCTGTTACTGCATACAGTATGGCCAAGAACGCGAGAGACAGGGAA AAGCGACAGCACCACGGACCTCTTTGGTTGTTCCTTTTTCAAAACATTGG TTGCAGTACATTCTTGCGTTCAAGTACGCACTGCCTGCTCTGACTGAGCT ACTGACGTACATACCATCGGCACCCCTCACATGCACGTGCACACACCCCT ACGAGGGTTTCCGAAAGCCTTGTCCTGGTGTTCATTTAGTTCAGCATTGC TGCGACTGACTGCTGCTGGTGTCTGTCCGTACAAAGTATGGCGAACCAAT CGCTCATCGCATGTTCCAAGTACAGTTTTCTGTTTTGTCGTGCCAGCGGT TACTATATATTAACTCTGGGTATTATACATGTATTTAAAGTCAGCACGAG CTTACATTGCCCAATCCATTCATGGAATTACTCTTTCGTTATTGTGCACT CTATATTTACCAGGAGCATGAACACCGCGATGCAAGAAGTCAGTACCTAG TATATAGAGAATTTGCCCCTTGTACTGTGTATCAGAAATGCACATTACCG CATCACACTATAACCTAATAGTAATTAAGTAATTTCCCCTACATTTTGTC ATCCTCAACTCAAGTTTTTATTGATCACCGTGTGGAAATGTATGATCTCT ACACAGCGTGCCCTTTACGACCGCACCGACTTGCGTCGATTTTCGGCGTC AAGAAAATCGATGTATCACTCACTACAGCACGACCTGCAGGTCGCCCATT CAACACCTATTTCCAGGCGGGTAGACGTTCTGACTGCTACAATTGGTACA GAACAATGCAGTTTGGCGTTTGGTTGGAAGATGTGATTGGTGCAATTTGT CTCGTCAGTGTCCGCTATTTGGATATTGCTCTAGTTCACTTGTGGGTCCT TCGATCAAGATTGCGCTGCAAAAGCTGAAATGACATATTTCGAGTGGGGC ATGGCGCCCGGCTTAAGTCCTTTGACATTGCCTGCAGCATGACGATAGAC CAAGTTTATGGATCAGCTGATTTCGCAAGTCCCTTTAGCTTTGGTACAGT GATCTGACCTCTGATGAGACAGCGCTATTGGGCTCGTGCCTGTCTCGTTC ATCAATGCACGTTCTTAGAGAGAGTGATTTCGATGTACCTATCCTATGCC GCAGTTTCACGTCAACCTCCTGACTTGAGTTTCTTAGCGGTCAAATGCAG GGCACTGTCTTGCGCAAGCGGTATTATGAGCAAACGTGAGAAACGCAGCT CGTCAAACCTCGAAAACTGTCGCTGGTCATTGATATGAGGATCTGTGTCC CACTCCCTGATCACTCGCTACTGCCAGAGCCCTCGAAATATCGCAAACAC CGACAGGATGTGTATGACTGAGTTGCTCCCACGGCAGTAACCCGTGTCCT CCGTTCTCCCTTTGTTGCCTCCTTACTAGTGTATTTTTGCTGATATAACT GTATACAAGTGCAGATGAAAATTTGCTGCATAATCTTAAGATGGGCACAA TGAAGTGTTATTATATGAGGTTCAGAGTTATGGTTCATGTTTCCCCCCCC CCCCCCCCCCCCACCGTCTCTGTCCCCACAACCCGTGCTTATGTTCGCCC TTCGTTTTATCGTGCTGGCCGATGACCATTAAATAGTCTGGAGTTGTGCT AAGCGGGATAAAGCCGTACCAGCGACTGTTTGCTTCCCTTCGCTTCTTGC GGCAAGTGCTGATTAACGATGTGTCCACGTCGTTTCGGCTTTCGTACGAT GCCAGCAGGCAGCAGGTAATGGGAGCTTTCTGCGGCTACAATGTTTTTTT TGTGTTCAAAACAAGTTATTGTAACATTATTTTATCGTTATTACTTGTTC CTAGACTTGCTGTTTTTCATGCCATATGCAGCGAAATAGACAAGACAGAG AGAAAAAGCATATCCCAAATACCTGGCAACTTTTTCGAGGATTTATCAAC CGCGTTTAGCTGAAGCACATAATGTTGGGTCGTTTGTTGAAGTTGACATT TTATAGGCGACATTTTTTTTGTCTTTCGTTGTGATAACCGCGGAAACAAC GCGGGTCATATCTTGTCGCTCGGGTGCTTGTTAGCGTTGGGGATGTAACC CCCCCCCCACACAGTAGCGAAGTGGTGCTATAGAAATATGCACGCAGAAC CCGTCGCATATGGGCGATTTGGTTGGAATGAGAGCGTTGACTCGCCCATC GAGGTATATGAATTTTTCGTCTTACAGTAGGAATAGCAATTTTTGCTTGT GTTTTTCATCAACCTCTCGTTTCGTTCGTTGCAGCGTAATTATCTTCTCC CAACCTTTCCCGATTTTGTGTTTCATTAATGTTGTTGTGTTGGCTGAACC TTACCACATAGCACCGTCAAAAGTGCACTTTTACACGGACTTGTTTTTCA AGAAATTCCCGCAAATGCAGTGGGGCGACGAGATCCCCCCCAATCCCCCC ATCTCCCTTTCCCTCCCTTACCTCGTCGCACCGCGCGTACGAATCGCGAG TGGGCTTACCCGCCCAAATTAGTTGACATTGCGCAGAACGTAAGATACCA AGGCAAAAATTGCGTTGGCGTTCTCCACGATGTATGTGTCTGTGTCTGTG TCTGTGTCTGTGTCTGTGTTTCGGCCATTATTCTGGGAACTAGTGTCCTC GTAAGTACTCTTGCTGTCAAGAACACCGAGTACATGGACGAAATCAATTC CTGACGGAGGATTTCGTTAGATATTTTTTCTCCACGCGGTCTATGACGCA TTCCATTCAACATTATAACCGGTCCGTTCATTTAACACCCAAGGTCAACC CCCCGTCTCCCCCTTACGCTGTCCCGCCCTGTCCCACCCACTTGTTACTT TTCATCTCACGCTGCTGCTTATCTATCGATGTCCCACCCAAGGTGCGAAT CTGTTGGCACTTCGTGCTCGATGCTCGGGCCGCGGAACGCCCCCTGCACG TGGACGGCATTAGCGTCTACTCCCTAAACAGCGTCGGAATTGTGCGAAAA CACGCCATAGAAACCATCATCGTCAACGGCACCCCGGTCAAGCCTCCCTT CGCGCAGGCCTGGATCAATCTACCATCGTGGCTGGGTGAGGGGTTGCAGG GCGGTGCGGTGCGGGCCCCCGGGCTGTCGTCATCGATAGGCTTAGCCCCG TTCCGTGCCCGCACGGGGCGGGAAGGAGTGGACACGCTAGGAGTTTTCGG CGGGGGTACCGGCGAGGATAGAGCGATTCGATCGAATCTAGTGGCCACAA CCACGGCGGCGGTGGCGACTCCTTTTCCTGTTGCTCCTCTAGCTCTTCTG TATGCGTCATTGTCATTTGCGTTTCTCCAGAACGGAGGTCAAATATTGTG CGCGTTGTTAATATCCGGCTCCGCCGTGCGAGAGCTGCGGTCGGTTGCCG GATTATTACCGGAATTATCAGAGGTTTCGTTGAATCCGGCGCCGTCATCC GATGGGTTGGAAGGAAAGCGGTTAAGGGCGCAAGGGTACCGATCGGCGGT AGGCGTGGGGCGCGGGGAGGGCGGTGGCGGCGGCGCGGGGGCAGAAGACG TCGAGAAAAGATCGCGTGTATCCTCGCCTTCGGAGGGAGATTGGCCGTCG GCTCGCCACGACGCCCAAAATGGGGACGAGGGTGAGCAGGACACGAGCAA TAATAATAATAATAATGATGATTCGAAAGAAAACAACGAGAACAACGACA ATAACGAGAACAACGCGAAGAAGAAAAAGAAGAAGAGTCTGTGGCCAATC CTGGACACCCCGTGGGGGTGCGAGACGAGCTTCGACTGCAGTGCGAGTCA GGTGTGCTGCGACTTCGTCGTGGTGAAGTTTTGCTGCAGCAACGGCATCA TGCAGCCTTTGCCGGGAGACGTGATCCCCGTCTATATTCCCATTCCGGGC CGCGGCAGGATCGAGCTGGATTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig3426:10971..15644-

>mRNA_H-paniculata_contig3426.9153.1 ID=mRNA_H-paniculata_contig3426.9153.1|Name=mRNA_H-paniculata_contig3426.9153.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2322bp|location=Sequence derived from alignment at H-paniculata_contig3426:10971..15644- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCTCCGGGATACGAGGGTGAAAAAGTAGGGAGGAGCAGCCAGGGTAG
CGACGACGACATGGCGGAATTTAATCGCAACGTGGGCAAGGTTATAGAAA
CTCTACGGCATGACTACAGTCGCATGTTTGTCGAGGAGTTGGACTTCGAC
ATCTACACTGAGGATTTGCAGCTGATCGACCCGATGCCTCCGGGATACGA
GGGTGAAAAAGTAGGGAGGAGCAGCCAGGGTAGCGACGACGACATGGCGG
AATTTAATCGCAACGTGGGCAAGGTTATAGAAACTCTACGGCATGACTAC
AGTCGCATGTTTGTCGAGGAGTTGGACTTCGACATCTACACTGAGGATTT
GCAGCTGATCGACCCGTCTGGAGTTGTGCTAAGCGGGATAAAGCCGTACC
AGCGACTGTTTGCTTCCCTTCGCTTCTTGCGGCAAGTGCTGATTAACGAT
GTGTCCACGTCGTTTCGGCTTTCGTACGATGCCAGCAGGCAGCAGTCTGG
AGTTGTGCTAAGCGGGATAAAGCCGTACCAGCGACTGTTTGCTTCCCTTC
GCTTCTTGCGGCAAGTGCTGATTAACGATGTGTCCACGTCGTTTCGGCTT
TCGTACGATGCCAGCAGGCAGCAGGTGCGAATCTGTTGGCACTTCGTGCT
CGATGCTCGGGCCGCGGAACGCCCCCTGCACGTGGACGGCATTAGCGTCT
ACTCCCTAAACAGCGTCGGAATTGTGCGAAAACACGCCATAGAAACCATC
ATCGTCAACGGCACCCCGGTCAAGCCTCCCTTCGCGCAGGCCTGGATCAA
TCTACCATCGTGGCTGGGTGAGGGGTTGCAGGGCGGTGCGGTGCGGGCCC
CCGGGCTGTCGTCATCGATAGGCTTAGCCCCGTTCCGTGCCCGCACGGGG
CGGGAAGGAGTGGACACGCTAGGAGTTTTCGGCGGGGGTACCGGCGAGGA
TAGAGCGATTCGATCGAATCTAGTGCGAATCTGTTGGCACTTCGTGCTCG
ATGCTCGGGCCGCGGAACGCCCCCTGCACGTGGACGGCATTAGCGTCTAC
TCCCTAAACAGCGTCGGAATTGTGCGAAAACACGCCATAGAAACCATCAT
CGTCAACGGCACCCCGGTCAAGCCTCCCTTCGCGCAGGCCTGGATCAATC
TACCATCGTGGCTGGGTGAGGGGTTGCAGGGCGGTGCGGTGCGGGCCCCC
GGGCTGTCGTCATCGATAGGCTTAGCCCCGTTCCGTGCCCGCACGGGGCG
GGAAGGAGTGGACACGCTAGGAGTTTTCGGCGGGGGTACCGGCGAGGATA
GAGCGATTCGATCGAATCTAGTTTCGTTGAATCCGGCGCCGTCATCCGAT
GGGTTGGAAGGAAAGCGGTTAAGGGCGCAAGGGTACCGATCGGCGGTAGG
CGTGGGGCGCGGGGAGGGCGGTGGCGGCGGCGCGGGGGCAGAAGACGTCG
AGAAAAGATCGCGTGTATCCTCGCCTTCGGAGGGAGATTGGCCGTCGGCT
CGCCACGACGCCCAAAATGGGGACGAGGGTGAGCAGGACACGAGCAATAA
TAATAATAATAATGATGATTCGAAAGAAAACAACGAGAACAACGACAATA
ACGAGAACAACGCGAAGAAGAAAAAGAAGAAGAGTCTGTGGCCAATCCTG
GACACCCCGTGGGGGTGCGAGACGAGCTTCGACTGCAGTGCGAGTCAGGT
GTGCTGCGACTTCGTCGTGGTGAAGTTTTGCTGCAGCAACGGCATCATGC
AGCCTTTGCCGGGAGACGTGATCCCCGTCTATATTCCCATTCCGGGCCGC
GGCAGGATCGAGCTGGATTAGGTTTCGTTGAATCCGGCGCCGTCATCCGA
TGGGTTGGAAGGAAAGCGGTTAAGGGCGCAAGGGTACCGATCGGCGGTAG
GCGTGGGGCGCGGGGAGGGCGGTGGCGGCGGCGCGGGGGCAGAAGACGTC
GAGAAAAGATCGCGTGTATCCTCGCCTTCGGAGGGAGATTGGCCGTCGGC
TCGCCACGACGCCCAAAATGGGGACGAGGGTGAGCAGGACACGAGCAATA
ATAATAATAATAATGATGATTCGAAAGAAAACAACGAGAACAACGACAAT
AACGAGAACAACGCGAAGAAGAAAAAGAAGAAGAGTCTGTGGCCAATCCT
GGACACCCCGTGGGGGTGCGAGACGAGCTTCGACTGCAGTGCGAGTCAGG
TGTGCTGCGACTTCGTCGTGGTGAAGTTTTGCTGCAGCAACGGCATCATG
CAGCCTTTGCCGGGAGACGTGATCCCCGTCTATATTCCCATTCCGGGCCG
CGGCAGGATCGAGCTGGATTAG
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