mRNA_H-paniculata_contig3424.9149.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3424.9149.1
Unique NamemRNA_H-paniculata_contig3424.9149.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3424.9149.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3424contigH-paniculata_contig3424:2848..4773 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size227
Cds size225
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3424.9149.1prot_H-paniculata_contig3424.9149.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3424 2848..4771 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930058.0728416-CDS-H-paniculata_contig3424:2847..29201622930058.0728416-CDS-H-paniculata_contig3424:2847..2920Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3424 2848..2920 +
1691481129.2846134-CDS-H-paniculata_contig3424:2847..29201691481129.2846134-CDS-H-paniculata_contig3424:2847..2920Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3424 2848..2920 +
1622930058.0938013-CDS-H-paniculata_contig3424:3823..39301622930058.0938013-CDS-H-paniculata_contig3424:3823..3930Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3424 3824..3930 +
1691481129.293543-CDS-H-paniculata_contig3424:3823..39301691481129.293543-CDS-H-paniculata_contig3424:3823..3930Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3424 3824..3930 +
1622930058.1076648-CDS-H-paniculata_contig3424:4726..47711622930058.1076648-CDS-H-paniculata_contig3424:4726..4771Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3424 4727..4771 +
1691481129.3021033-CDS-H-paniculata_contig3424:4726..47711691481129.3021033-CDS-H-paniculata_contig3424:4726..4771Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3424 4727..4771 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3424.9149.1

>prot_H-paniculata_contig3424.9149.1 ID=prot_H-paniculata_contig3424.9149.1|Name=mRNA_H-paniculata_contig3424.9149.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=75bp
IFGCECGQFHAGVGLTEGTFALREDTSSAAMSATSSPPSAIVKREKSCAS
ALGTCSAFERADPWALAILNNIVGL
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mRNA from alignment at H-paniculata_contig3424:2848..4773+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3424.9149.1 ID=mRNA_H-paniculata_contig3424.9149.1|Name=mRNA_H-paniculata_contig3424.9149.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1926bp|location=Sequence derived from alignment at H-paniculata_contig3424:2848..4773+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTTTCGGGTGCGAATGTGGGCAGTTTCACGCTGGGGTTGGTTTAACCGA
AGGAACTTTCGCGCTCAGGGAAGGTACGAACATAGCTGTGCATATTTGTA
TATGCTGGAAAAACGATCGGCTGTTGGTAAGTTGTGTCGGGGGTATGTTT
GCATTTGGGGGGCGGATAACTGTACCGTTTTGTGAGTTTCTCTTTCTCTC
TCTCTTCCGCCCCCCTATTTCTCTTGACAAAGTGACTTCGCAGTACGATT
AGTTATCCAGTACGAGTCATCCCTGAATCTTTTCACTTCCTGGACGGGTT
GGATTGTACGATGTATTGCCATGCGAAACATGTGACTGTAAAGCACGTAC
AACTATTATGTTCATACAATACCTGAATGTATTATACAGGCACTACAGTA
TTGCCTGTAAAGATTTCATCAAACGGACGTACAATATACTGCACCACAAT
ACGTCCGGCCGATTCCATATTAAAACGTCCGGTTATATTGAAAGACGACC
CGACCCGCGGAGGATTCACAAAACGGACTTTTGTGATGGATTCCTTGGAA
CATTTAACATTGAGAAATAATTTTTGAGTAGTTCTGCCAATAGGCAAGCT
CTAAATGGTCCCGGAAGAACGGTAGACAGAATGAGGGACGTTCAGCTCAT
TTACGACTCACATCTACTAGTAAGTCGAATAGGTGCGCATGGAAAATGCC
TTCCGCTAGCACCATTTTCGAAGTATTACATTCAAATTCAACGGGACTTC
AATCCCAACAAGAAAGTTTATCCCTCATCCCGAGGATCGCCTGTTAGTAA
GTAAATCAGCATCGATATATCTATTTCCCCGTTCCTTCGATTTCTTCTGA
ACTATTAACGCCGGTGCACGGGCGGTACTGCCCTCACCACGATTGCCGGT
TCGCACGGGCCACGGGGATCGGTGGCACCGCGGGATCGGTGACGTTTGGA
TCATGACGCTGAACGGATGCAACTAGACACCTCCTCAGCAGCAATGTCAG
CAACGTCCAGTCCTCCATCGGCGATCGTGAAGCGGGAAAAATCGTGCGCG
TCTGCCTTAGGAACATGCTCAGCGTTCGAACGTGTGAGTTTTACCCAGTG
AACGGCTATGTACTTACCACAGCTCGGCCTCTACCGATAAATGCTTCCCT
AATTGGCGCTGTTGTGTGCGTTGACGAATTTACTGTATTGCGAAAGGATG
CTCGGCATGGAGTGGAGAGGAAATGAATAATATACATCAAGATTGTGTGA
CGCCTGTCGTGACCGCTCTTGTGTTATCACCCCCCCCTCCCCCCCTCTCG
ATTTGGCCTTGACAACAAACAAGTCCAGCGCTGTTAATCCTTGTTGAGCG
TGCCAAGTTGGCCGCATCTGATCTCGCAGTGTTGTATTTTTGTATTTATA
GATATCTGGCGGCGCTGTTTCCATGCGTTGACGCATTTTTGTTCAAACCC
AATCGATGAAACGTAATGCAACGGTAAAGTGGAAACCCGCTTGATAGAGT
GCGAGATAGCTCACCAGATGAAACATGAAGCGACTAACTTGGTGTAACGG
GAAACGGGAGCTTCATATGTAGCGTGAAGGGCTAACGAGGTGTAACGAAA
AATGGCTTACTTGAATTGCGTAAGCGGTAGCTTAGTGTCGTGCAACAGTA
AACTCAATGTTGCTGTAACAACTAGCGTGGGGTAACGATACGACCGCTGA
CTAAATGTTACACATCGGCTTGGTTGATATAGTGTAACCGCGTAACTTGG
TGTGACGTAGAACAGTTACCGTGAGTGTAACGCAGCCGCTAGCTTGAAGT
AACGTGAGCGCGTACGTATGTATGTTGGATGCAAATTGTCGACTGCTTTG
GTATATCTTGAATGCGACGCACCCGACAGGCGGATCCATGGGCTCTAGCT
ATCCTGAACAATATCGTCGGGCTGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig3424:2848..4773+

>mRNA_H-paniculata_contig3424.9149.1 ID=mRNA_H-paniculata_contig3424.9149.1|Name=mRNA_H-paniculata_contig3424.9149.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=450bp|location=Sequence derived from alignment at H-paniculata_contig3424:2848..4773+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTTTCGGGTGCGAATGTGGGCAGTTTCACGCTGGGGTTGGTTTAACCGA
AGGAACTTTCGCGCTCAGGGAAGATTTTCGGGTGCGAATGTGGGCAGTTT
CACGCTGGGGTTGGTTTAACCGAAGGAACTTTCGCGCTCAGGGAAGACAC
CTCCTCAGCAGCAATGTCAGCAACGTCCAGTCCTCCATCGGCGATCGTGA
AGCGGGAAAAATCGTGCGCGTCTGCCTTAGGAACATGCTCAGCGTTCGAA
CGTACACCTCCTCAGCAGCAATGTCAGCAACGTCCAGTCCTCCATCGGCG
ATCGTGAAGCGGGAAAAATCGTGCGCGTCTGCCTTAGGAACATGCTCAGC
GTTCGAACGTGCGGATCCATGGGCTCTAGCTATCCTGAACAATATCGTCG
GGCTGGCGGATCCATGGGCTCTAGCTATCCTGAACAATATCGTCGGGCTG
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