mRNA_H-paniculata_contig3423.9148.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3423.9148.1
Unique NamemRNA_H-paniculata_contig3423.9148.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3423.9148.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3423contigH-paniculata_contig3423:4487..9760 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1316
Cds size990
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3423.9148.1prot_H-paniculata_contig3423.9148.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3423 4487..5476 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930057.9132514-CDS-H-paniculata_contig3423:4486..54761622930057.9132514-CDS-H-paniculata_contig3423:4486..5476Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3423 4487..5476 -
1691481129.2498536-CDS-H-paniculata_contig3423:4486..54761691481129.2498536-CDS-H-paniculata_contig3423:4486..5476Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3423 4487..5476 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930058.0016687-UTR-H-paniculata_contig3423:5476..56331622930058.0016687-UTR-H-paniculata_contig3423:5476..5633Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3423 5477..5633 -
1691481129.2663977-UTR-H-paniculata_contig3423:5476..56331691481129.2663977-UTR-H-paniculata_contig3423:5476..5633Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3423 5477..5633 -
1622930058.016831-UTR-H-paniculata_contig3423:9591..97601622930058.016831-UTR-H-paniculata_contig3423:9591..9760Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3423 9592..9760 -
1691481129.2747853-UTR-H-paniculata_contig3423:9591..97601691481129.2747853-UTR-H-paniculata_contig3423:9591..9760Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3423 9592..9760 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3423.9148.1

>prot_H-paniculata_contig3423.9148.1 ID=prot_H-paniculata_contig3423.9148.1|Name=mRNA_H-paniculata_contig3423.9148.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=330bp
MSEDRRDDPMEDDDKREDPMEEEVDVTGTDDPAPSVIPLPAATLPPPQST
PPSLLTPMTHPMHHHHAQPPAAAAVAPAPPAPVAIPTSTSHLPPTPLATH
PPPVTATPAPSLLPPPVTTTTAAVQQPLPPQISAAMATVSAADVTPAPVI
SVAISTAPPPIAVTSAAPALGIAPPHTSMAMPTVPAPAPVHAAIGIAVPP
PVPNVAVSATAAPSMLSAMSAAPVSAAMPMVSVSSAMSAAPVSAAVSVAP
APVAVAMAPIQIGAPAPPQHPPPQQQQQQQATMAMVLGAAASLPPASAVG
IVANPGVAPVGPPQVQPGAMQAGPPPGVGM
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mRNA from alignment at H-paniculata_contig3423:4487..9760-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3423.9148.1 ID=mRNA_H-paniculata_contig3423.9148.1|Name=mRNA_H-paniculata_contig3423.9148.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5274bp|location=Sequence derived from alignment at H-paniculata_contig3423:4487..9760- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTATTTCCAATCATCTTGTTTTGAGTTCTGTCAGCTTGGTTGTTGTGTGC
ATTGGTTGTCTGGGGTTCACACATCAGCAACCTCACGTATATTTCTCACT
TGCTGACGGATAAAAAGAGGCTCGCGTAGCCCCCACGGACATAGCCTCGG
AGAGAGGAAACGCAAACAGGTGCGTGGATCGGGCGCTGCCTATGGCCCGA
ATTGGGGGCCGGAGGGCTGCTGTCTCAGGGTGTCTTTCGCGGTCGTCGCT
GCTGCCCATTTCAAAATTACACAGGGGTCTCCTCTCTTTTCTCTTTATTC
TGTAGTTCGGATCGAGATTATGTTTTTGCGGACTCTATCTGCCTCGTCTG
TGAGGGAACAGTGATTTTTGGTCCAGTCTGAAGAACTTACTTTTGGGCAA
TTACCCTCAATGCACCCGCCACCATCTGCGCGCTCGACTACAAGTGCGTG
AACATGACTCGGTGGAGATTGTTTGGGTGTGTGTAGGGGGGGCAGGGTGG
ATTTAAAATCCGAGGGGGGGCTGCGCCCAAAGGCGAGGGTCATCATTTTT
TTGGCTCGCCGAAGTTGTCATAATTTGCGCATTGCCAAGTTCGATTGTCT
GTGCTTTTGACCATAAATATTTGGTGTCCAAAGCAATCCGGAAGAAAGGT
CCCGCGGCAACCCTGATAGGCATTGCATGGTGCAGGGAATGCACCCGCAA
ATGCTTGTAAAGCGTCCGCAGGGCACTCGTGCATTCGCCTGTTGTGAAAC
GGTGGCTGTTTGCGAGCTCCAGCGTTCAATATTTTATTTTACCCGTGACG
AGGGCGTTGTCGCCCTTGTCATCATTCGCTGCCCCGCACAGCGGACATCG
TCATAATTTGCCGATATTTTCCAGTATATATGTGCGTTCGTCACAGCGTG
TAGGGTCCCCTTGGGCCCCAATCACGTGTGACTCGTAGGGGCAGGTTGGA
TTCACCAAATCTTGTGCTTGACTCTGGGCGGAGCATGTTCATTATCTCTA
AGGATGGGTGTTTCCGCACCGATCGTCCACCCCTTCAGCGGCCTTGTCAT
GATTTTCTGCTTCTCTCTAGAGGCAAGTCATCATTATTTTCCGTTCTTTT
CGAACCTCACACTCCATGTTTATCTGTCTGTACCTCAGCCTCACTACTGA
CTGGGATGGGATGGGATGGCATGACACATCATTTTACTTGGGCAGCGTGA
TGTTTAAAGCCCGGTGTTGTAGCGGAAACTGCATAATGGTCACAGCAGGA
GTCTGAATTGCTGTCGCCACATTGTCGTCTGTACTGACTACTGATGTGTT
TCAATATCCATGAGCGACTATCATCCTTCTATCCTGGTTGCTTGATAAGC
TGTAAAATATTCACAGTTGCTTTTTCTACGCGTCTCTGTTACTCTGCTGC
TGCATTTTCAATCTGTACTCTCTGGCTTTATCACTTATGGATAAAGTTCG
CCCGAGCTGCCACTTTTGAGCTTTTGATGGACCACCATGCAACTCCCCTA
ACCCCGGTGCTTGTTTGTACACTCCGTAAATACCAGTCCACTCCTTTCGA
AACACACCGCCAATCTTACCATGGGTATACTGGAGACAAAGCTCTCGAAC
CATGGGCGACGAACAGACAGCGAAATGCTAGGCTTTGTTTTCTCTGGTGG
ACTCATGCACACACTCGTCATATATTGTGGCCCGAATTTCAGGGTCGAGG
TTGAATATGAGGTTTTGCTCACTCGCAGGTTAATAATGTACGTCAGTGGG
TTTCTTTCGCCCCCGCACAAGGATCGAAATATACCATTTCATACTTCACA
CTGATTGCACCATTTTTCTTAATTGCCATAGATAGTCCGACAGTGCATAT
GTAAATAACCAGCAGCACACCCACAAAGAAAAATACTGTACAGACAGTAT
TCCATTTCGCGTGCCCGTGCCCGTGCCCGTGCCCGTGCGCATGCTCAAAC
AAATCGACGTTTAGAATAACTAGTGTTCCAGCTTGTTGGAAGCCTATGGC
GCAGGGGTTAGATGTTGGACGCTTGCGCAGTACAGTGACCAGGCAGCACC
TAACAGGGTTTGGCAATTCCGTTTTTCAAATATTTTATATGCGGCGGCAT
TGTGTTCCATTTCAGATTTATGATACGGGAAATACTTTTTTCTTATGATT
AAATACGATGCGGAAGTCCGCCCACACCCAACAGAGTGACAATTCCGTTT
TTCGAAAAAACTATTTGTATGCAGCATGAATTTCTTTTCTTTACATAATA
ACCATGCGAAAATTCCGTTTTTATTTATATTTGACGTTCGGGAATTCCAT
ATTACGCTTAGCCACCCCTCCCACTGTGGTATTTGCTGCCTGGACCTCTT
GAGTATGTCATTCTGGCCATGATTAATGCCTGTCAAAGACGTCCCCATCT
AAACCCCCTTAGGCACCGAAGTGGACGACCATAGGGTGGTCGGTTTCCTC
TGCCGCGTTGCTTCCTTTCTCCCCGTTCGCGATGAGTTTCGCCAGCATCA
CAGTCCCTTTCTTATGATGTGAAAAAAATCCTCTTTAAAAAATAGCATTT
TTTGCGTTTCTCTGTTTAATACGTATTTTTTTCAGCTGTTTTTTACCAGG
TTTGCGTTTCAAACGTCAGTACACAACGTTGTCGTCGACATCTTGACCCA
CAAGTCGATAATCGGAGCGAAATATTTCGCCTAACATACCCACCTACACG
TCAGCCTGTAGCTCGTGCCAATTGAGAGATACTGGATGGCGTGGCTTGTG
ACCATCGCCCCGCTAAATTAGAGTATGATTTTCCATGTTGAAGCGTTCCC
GTGAACATTTTTTTCGAGTGTAGTTATAACGGCAAAATCTCAAATACCGT
CACCGTTCACCAATCGATGTCGTCAGAGCGACGGCCACAAGCGACGCCGT
GCACCATCTTTCAGTTGGCACGAGCCTAAACCGATGTGTCTGAACATTAT
CCAAGAGATGTCGCTCTGACGGTGGATCTCTCGGTCAAGATGCAGACGGC
AAGGTTGGTTACTCTGACTGTTTAATACGCGAATTTGAAAAGAGCGAGAC
GAAAAAGCCCGCAAATTGAAAAAAAAAAAATTCCTTTCCCCAAACAAGAC
TTTTTCAAACAAGAAACAGCAGATGTTATGCACTTCGCATTTTGCACGAA
CAGCGGTCCGATATGGTTCGACATGTTGCGGGTGGTCATTTTCCAAAACT
CCCAAGTGAAGTCCAATGACATCGGATGTTGACATAACATCCGCGTCGAA
CCGCGCGAATTATATTTCGATTCACTCTATTTAGCATTCCCCCCTACAAA
TTCCGAAATACAAATAGCTGGATTTATCACGAGGAATATTGAGTTGAATT
GTGTTTTGTTTTCGTTCGGTGGGCAGGACGGCAAATTACCTCTTAAATCA
AAAATTATTTCGTGTATGTAGGCCCTTTCTAATGGCACATCGCTTTTCTT
TATTTTTAAAGTTGATGTGTTGGATGTTTACTGTCTGTAGACCCAGGCCA
CTTTTTAGTGGGGGACTTTTTTTTTAGAGATTTTTATTTTTTGTTTTTTG
GGTAGTTTCTCGCCCAGAAAAAAAATGTAAAAGTTATCGAGGAGTTTCCT
CGAGAGAAAATGGCCTCCATGTTCGCCAGAACTCCTTAAACAGCCCAAGT
AGGCGGAGATTCCTCCCACCTTTACTGTTTATTCGGGGGGCACAAAAGTC
CCAAACCCGTATATCTTTTGTGCAGGATTCGCTGCACGCCTGCGGACGAT
CCCACTATCATCATGGTAGCCAGTCATCACATCTCGTGGTGGGACCCTCC
GCATGAGTGCAGCACATTAAATATACAGGTTGGAAACATTTGGCCCCTCC
CAAAAAAGAGGCGAGAAATGGGATCATTTTCACCAGAAAAAGTCTGTGAT
AACTTATGAAGAACGTTTCTTGCCCAAGGAAACTGTCCGAGACGAAAAAA
TAAATCCACCCCGATAAGATATGCGATACGAATGTCCTATTTTATCATCG
ATGATCACTTCAACCCATTTATGACAAATCATGATAAGGCATAATGTGTC
CAACGCCGACTGATCACTTTTCCTCTTGTTTTACTGCTTCCTGTTTTATC
GTTTTGGTTCTCTACGAAAAAAATTAGGCTTGGAGCAAGAACACAGCAAC
GTTCACCCGTCTACCACTTCGGCAAGGCAAGAGAACGCCAGCCAGTTAGC
CAGCCAACATAATCATCATCACACAACGGTCAAAGCCCAGTGACAGAAGT
CAGTCCCAGTCGATAACCCCTTACAACCAGAAACATGTCGGAGGATAGAC
GAGACGACCCCATGGAAGACGACGACAAGAGAGAAGACCCCATGGAAGAG
GAGGTGGACGTGACGGGCACAGACGACCCGGCACCGTCAGTTATCCCACT
CCCCGCGGCAACATTACCACCACCACAATCGACACCACCCTCGCTACTTA
CACCGATGACCCACCCGATGCATCATCACCATGCCCAGCCGCCGGCAGCA
GCAGCAGTAGCCCCCGCCCCACCTGCTCCCGTCGCCATCCCAACCTCCAC
ATCCCACCTCCCGCCGACTCCCCTTGCCACGCACCCCCCCCCCGTCACCG
CCACCCCCGCTCCGTCACTGCTCCCTCCTCCGGTCACCACCACCACCGCC
GCCGTCCAGCAGCCGCTTCCACCGCAGATCTCAGCAGCAATGGCCACGGT
CTCTGCCGCAGACGTGACACCCGCCCCGGTTATATCGGTTGCCATTTCAA
CCGCCCCGCCGCCAATCGCCGTTACTTCGGCAGCCCCCGCGCTGGGGATC
GCGCCGCCGCATACATCGATGGCTATGCCAACGGTACCTGCGCCCGCGCC
GGTACATGCTGCTATCGGGATCGCTGTGCCTCCGCCCGTCCCTAATGTGG
CGGTGTCGGCGACGGCTGCCCCTTCGATGTTGTCGGCCATGTCGGCGGCA
CCCGTGTCAGCGGCTATGCCGATGGTGTCCGTTTCTTCGGCCATGTCGGC
GGCGCCCGTGTCTGCCGCGGTATCGGTGGCACCAGCCCCTGTCGCGGTTG
CTATGGCACCGATCCAGATAGGGGCGCCTGCGCCGCCCCAGCACCCGCCA
CCGCAGCAGCAGCAGCAGCAGCAAGCGACGATGGCGATGGTACTCGGCGC
GGCGGCGTCTTTACCGCCGGCATCGGCTGTCGGGATCGTGGCGAATCCTG
GAGTGGCCCCTGTGGGTCCTCCGCAGGTTCAGCCGGGGGCAATGCAGGCG
GGACCGCCCCCCGGGGTGGGGATG
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Coding sequence (CDS) from alignment at H-paniculata_contig3423:4487..9760-

>mRNA_H-paniculata_contig3423.9148.1 ID=mRNA_H-paniculata_contig3423.9148.1|Name=mRNA_H-paniculata_contig3423.9148.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1980bp|location=Sequence derived from alignment at H-paniculata_contig3423:4487..9760- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGGAGGATAGACGAGACGACCCCATGGAAGACGACGACAAGAGAGA
AGACCCCATGGAAGAGGAGGTGGACGTGACGGGCACAGACGACCCGGCAC
CGTCAGTTATCCCACTCCCCGCGGCAACATTACCACCACCACAATCGACA
CCACCCTCGCTACTTACACCGATGACCCACCCGATGCATCATCACCATGC
CCAGCCGCCGGCAGCAGCAGCAGTAGCCCCCGCCCCACCTGCTCCCGTCG
CCATCCCAACCTCCACATCCCACCTCCCGCCGACTCCCCTTGCCACGCAC
CCCCCCCCCGTCACCGCCACCCCCGCTCCGTCACTGCTCCCTCCTCCGGT
CACCACCACCACCGCCGCCGTCCAGCAGCCGCTTCCACCGCAGATCTCAG
CAGCAATGGCCACGGTCTCTGCCGCAGACGTGACACCCGCCCCGGTTATA
TCGGTTGCCATTTCAACCGCCCCGCCGCCAATCGCCGTTACTTCGGCAGC
CCCCGCGCTGGGGATCGCGCCGCCGCATACATCGATGGCTATGCCAACGG
TACCTGCGCCCGCGCCGGTACATGCTGCTATCGGGATCGCTGTGCCTCCG
CCCGTCCCTAATGTGGCGGTGTCGGCGACGGCTGCCCCTTCGATGTTGTC
GGCCATGTCGGCGGCACCCGTGTCAGCGGCTATGCCGATGGTGTCCGTTT
CTTCGGCCATGTCGGCGGCGCCCGTGTCTGCCGCGGTATCGGTGGCACCA
GCCCCTGTCGCGGTTGCTATGGCACCGATCCAGATAGGGGCGCCTGCGCC
GCCCCAGCACCCGCCACCGCAGCAGCAGCAGCAGCAGCAAGCGACGATGG
CGATGGTACTCGGCGCGGCGGCGTCTTTACCGCCGGCATCGGCTGTCGGG
ATCGTGGCGAATCCTGGAGTGGCCCCTGTGGGTCCTCCGCAGGTTCAGCC
GGGGGCAATGCAGGCGGGACCGCCCCCCGGGGTGGGGATGATGTCGGAGG
ATAGACGAGACGACCCCATGGAAGACGACGACAAGAGAGAAGACCCCATG
GAAGAGGAGGTGGACGTGACGGGCACAGACGACCCGGCACCGTCAGTTAT
CCCACTCCCCGCGGCAACATTACCACCACCACAATCGACACCACCCTCGC
TACTTACACCGATGACCCACCCGATGCATCATCACCATGCCCAGCCGCCG
GCAGCAGCAGCAGTAGCCCCCGCCCCACCTGCTCCCGTCGCCATCCCAAC
CTCCACATCCCACCTCCCGCCGACTCCCCTTGCCACGCACCCCCCCCCCG
TCACCGCCACCCCCGCTCCGTCACTGCTCCCTCCTCCGGTCACCACCACC
ACCGCCGCCGTCCAGCAGCCGCTTCCACCGCAGATCTCAGCAGCAATGGC
CACGGTCTCTGCCGCAGACGTGACACCCGCCCCGGTTATATCGGTTGCCA
TTTCAACCGCCCCGCCGCCAATCGCCGTTACTTCGGCAGCCCCCGCGCTG
GGGATCGCGCCGCCGCATACATCGATGGCTATGCCAACGGTACCTGCGCC
CGCGCCGGTACATGCTGCTATCGGGATCGCTGTGCCTCCGCCCGTCCCTA
ATGTGGCGGTGTCGGCGACGGCTGCCCCTTCGATGTTGTCGGCCATGTCG
GCGGCACCCGTGTCAGCGGCTATGCCGATGGTGTCCGTTTCTTCGGCCAT
GTCGGCGGCGCCCGTGTCTGCCGCGGTATCGGTGGCACCAGCCCCTGTCG
CGGTTGCTATGGCACCGATCCAGATAGGGGCGCCTGCGCCGCCCCAGCAC
CCGCCACCGCAGCAGCAGCAGCAGCAGCAAGCGACGATGGCGATGGTACT
CGGCGCGGCGGCGTCTTTACCGCCGGCATCGGCTGTCGGGATCGTGGCGA
ATCCTGGAGTGGCCCCTGTGGGTCCTCCGCAGGTTCAGCCGGGGGCAATG
CAGGCGGGACCGCCCCCCGGGGTGGGGATG
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