mRNA_H-paniculata_contig34223.9145.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig34223.9145.1
Unique NamemRNA_H-paniculata_contig34223.9145.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig34223.9145.1 vs. uniprot
Match: A0A6H5L981_9PHAE (PDZ domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L981_9PHAE)

HSP 1 Score: 228 bits (581), Expect = 3.060e-67
Identity = 121/138 (87.68%), Postives = 128/138 (92.75%), Query Frame = 1
Query:    1 EITLTRRLVKLRDVKLAALVGDVKKEPVGYLQLSGFSKGAAQELEQAYRYLDANANGGLRGVILDLRGNPGGLLEAAVDVSALFVPEGSSIVSIKGRNFQDVTYGSSNGPLRTASIPLVVLINGGTASAAEIVSGAVQ 414
            EITLTRRLVKLRDVKLAALVGDVK  PVGY+QLSGFS GAAQEL+QAYRYLD+ A GGLRGVILD+RGNPGGLLEAAVDVSALFVP+GS IVSIKGRNFQDVTYGSS GP+R AS PLVVL NGGTASAAEIV+GAVQ
Sbjct:  483 EITLTRRLVKLRDVKLAALVGDVKNAPVGYMQLSGFSMGAAQELQQAYRYLDSAAEGGLRGVILDMRGNPGGLLEAAVDVSALFVPDGSRIVSIKGRNFQDVTYGSSQGPVRPASTPLVVLTNGGTASAAEIVAGAVQ 620          
BLAST of mRNA_H-paniculata_contig34223.9145.1 vs. uniprot
Match: A0A835Z050_9STRA (ClpP/crotonase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z050_9STRA)

HSP 1 Score: 148 bits (373), Expect = 9.330e-39
Identity = 83/138 (60.14%), Postives = 100/138 (72.46%), Query Frame = 1
Query:    1 EITLTRRLVKLRDVKLAALVGDVKKEPVGYLQLSGFSKGAAQELEQAYRYLDANANGGLRGVILDLRGNPGGLLEAAVDVSALFVPEGSSIVSIKGRNFQDVTYGSSNGPLRTASIPLVVLINGGTASAAEIVSGAVQ 414
            E+ L RR+VK+ DVKLA LVG    + VGY+QLSGFS  A ++L  A   LD  A  GL G+ILDLRGNPGGLLE+AV+VSA  VP+GS IV  KGR F +  Y S++ PLR A +PL +L N GTASAAEIVSGA+Q
Sbjct:  291 EVILKRRMVKVSDVKLATLVGS-PADGVGYVQLSGFSPSAGKDLAAALHALDMTAPKGLSGLILDLRGNPGGLLESAVEVSAALVPQGSDIVFAKGRAFGEAKYKSASAPLRRAEVPLAILTNSGTASAAEIVSGAIQ 427          
BLAST of mRNA_H-paniculata_contig34223.9145.1 vs. uniprot
Match: A0A7S3XNJ2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XNJ2_HETAK)

HSP 1 Score: 139 bits (349), Expect = 1.870e-35
Identity = 81/146 (55.48%), Postives = 101/146 (69.18%), Query Frame = 1
Query:    1 EITLTRRLVKLRDVKLAAL----VGDVKKEPVGYLQLSGFSKGAAQELEQAYRYLDANANGG----LRGVILDLRGNPGGLLEAAVDVSALFVPEGSSIVSIKGRNFQDVTYGSSNGPLRTASIPLVVLINGGTASAAEIVSGAVQ 414
            E+ L RR V++ DVK   L    V      PVGY+ L GFS GA +E+E AYR L   A       LRGV+LDLRGNPGGLL++AVDV++L VP  S++VS+KGRNF +  + S+  P+R  S PLVVL++GGTASAAEIVSGAVQ
Sbjct:  326 EVVLPRRQVRVPDVKCFTLLDPKVVGAPDFPVGYISLKGFSAGAGREVELAYRVLTERAQAAGASRLRGVVLDLRGNPGGLLDSAVDVASLLVPRDSTLVSVKGRNFPETGFVSTGDPVRPLSQPLVVLVDGGTASAAEIVSGAVQ 471          
BLAST of mRNA_H-paniculata_contig34223.9145.1 vs. uniprot
Match: A0A7S2AM26_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AM26_9STRA)

HSP 1 Score: 134 bits (338), Expect = 1.150e-34
Identity = 81/147 (55.10%), Postives = 102/147 (69.39%), Query Frame = 1
Query:    1 EITLTRRLVKLRDVKLAALVGDVK-----KEPVGYLQLSGFSKGAAQELEQAYRYLDANAN----GGLRGVILDLRGNPGGLLEAAVDVSALFVPEGSSIVSIKGRNFQDVTYGSSNGPLRTASIPLVVLINGGTASAAEIVSGAVQ 414
            E  L R  V+LRDVKLA L+G  +     +  +GY++LSGFS+ A  EL QA   LDA A       L G++LDLRGNPGGLL +AVDV+++FVP+ S IVS KGR F+ V Y S+  P+  +S+PL VLIN GTASAAEIVSGA+Q
Sbjct:   47 EAELPRSQVRLRDVKLATLLGPSEGASSNQPAIGYVELSGFSQEAGAELRQAVANLDAEARVLHGTPLTGLVLDLRGNPGGLLTSAVDVASVFVPKDSDIVSAKGRGFRPVLYRSTAEPVVPSSVPLAVLINSGTASAAEIVSGAIQ 193          
BLAST of mRNA_H-paniculata_contig34223.9145.1 vs. uniprot
Match: A0A0G4F0N3_VITBC (PDZ domain-containing protein n=3 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F0N3_VITBC)

HSP 1 Score: 134 bits (337), Expect = 8.550e-34
Identity = 76/138 (55.07%), Postives = 101/138 (73.19%), Query Frame = 1
Query:    4 ITLTRRLVKLRDVKLAALVGDVKKEPVGYLQLSGFSKGAAQELEQAYRYLDANA-NGGLRGVILDLRGNPGGLLEAAVDVSALFVPEGSSIVSIKGRNFQDVTYGSSNGPLRTASIPLVVLINGGTASAAEIVSGAVQ 414
            +TLTRRLV++ +VKL   +G  + + +GY+QLSGFS  +  E+  A R+L  NA   GL GV+LDLRGNPGGLL +AVD+++LFVP+GS IVS +GR+F  V Y S+  P+   S+ LV+L N  TASAAEIVSGA+Q
Sbjct:  445 VTLTRRLVRVPNVKLFQYLGS-RDDGIGYIQLSGFSASSFAEMRVALRWLQQNAPRAGLDGVVLDLRGNPGGLLNSAVDIASLFVPKGSEIVSAQGRSFVRVAYKSTTEPVLDPSVKLVLLTNEATASAAEIVSGAIQ 581          
BLAST of mRNA_H-paniculata_contig34223.9145.1 vs. uniprot
Match: B7GBC3_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GBC3_PHATC)

HSP 1 Score: 132 bits (333), Expect = 2.880e-33
Identity = 75/143 (52.45%), Postives = 98/143 (68.53%), Query Frame = 1
Query:    4 ITLTRRLVKLRDVKLAALVGDVKKEPVGYLQLSGFSKGAAQELEQAYRYLD------ANANGGLRGVILDLRGNPGGLLEAAVDVSALFVPEGSSIVSIKGRNFQDVTYGSSNGPLRTASIPLVVLINGGTASAAEIVSGAVQ 414
            +T+ R +V+LRDVKLA LVG   ++ +GY+QLSGF+  A  E+ QA  YL        N +  L+G++LDLRGNPGGLL +AVDV++L VP GS IVS +GR F  + Y S   P+   +  L VL+NG TASAAEIV+GAVQ
Sbjct:  414 VTMPRAVVRLRDVKLATLVGS-PRDGIGYIQLSGFTSNAGAEMRQAITYLQQRTLDATNGDKSLQGLVLDLRGNPGGLLTSAVDVASLLVPNGSDIVSARGRGFPGMLYRSRVDPILNPNTKLAVLVNGQTASAAEIVAGAVQ 555          
BLAST of mRNA_H-paniculata_contig34223.9145.1 vs. uniprot
Match: A0A0G4EX77_VITBC (PDZ domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EX77_VITBC)

HSP 1 Score: 132 bits (332), Expect = 3.700e-33
Identity = 75/138 (54.35%), Postives = 101/138 (73.19%), Query Frame = 1
Query:    4 ITLTRRLVKLRDVKLAALVGDVKKEPVGYLQLSGFSKGAAQELEQAYRYLDANA-NGGLRGVILDLRGNPGGLLEAAVDVSALFVPEGSSIVSIKGRNFQDVTYGSSNGPLRTASIPLVVLINGGTASAAEIVSGAVQ 414
            +TLTRRLV++ +VKL   +G  + + +GY+QLSGFS  +  E+  A R+L  NA   GL GV+L+LRGNPGGLL +AVD+++LFVP+GS IVS +GR+F  V Y S+  P+   S+ LV+L N  TASAAEIVSGA+Q
Sbjct:  229 VTLTRRLVRVPNVKLFQYLGS-RDDGIGYIQLSGFSASSFAEMRVALRWLQQNAPRAGLDGVVLNLRGNPGGLLNSAVDIASLFVPKGSEIVSAQGRSFVRVAYKSTTEPVLDPSVKLVLLTNEATASAAEIVSGAIQ 365          
BLAST of mRNA_H-paniculata_contig34223.9145.1 vs. uniprot
Match: A0A7S4IQW6_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IQW6_9STRA)

HSP 1 Score: 130 bits (327), Expect = 1.880e-32
Identity = 76/143 (53.15%), Postives = 97/143 (67.83%), Query Frame = 1
Query:    4 ITLTRRLVKLRDVKLAALVGDVKKEPVGYLQLSGFSKGAAQELEQAYRYLD------ANANGGLRGVILDLRGNPGGLLEAAVDVSALFVPEGSSIVSIKGRNFQDVTYGSSNGPLRTASIPLVVLINGGTASAAEIVSGAVQ 414
            ++L R LVK+RDVKLA  VGD  ++ VGY+Q+SGF+    +EL  A   L       +    GLRG++LDLRGNPGGLL +AVDV++L VP+GS IVS +GR F  V Y S   P+   +  L VL+NG TASAAEIVSGA+Q
Sbjct:  446 VSLPRTLVKMRDVKLATFVGD-PRDGVGYVQVSGFAAETGRELRNAILALQRVAEDTSGGEAGLRGLVLDLRGNPGGLLTSAVDVASLVVPKGSDIVSARGRGFPSVLYRSRVDPILDPATKLAVLVNGQTASAAEIVSGAIQ 587          
BLAST of mRNA_H-paniculata_contig34223.9145.1 vs. uniprot
Match: A0A7S1B4F4_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B4F4_9STRA)

HSP 1 Score: 127 bits (319), Expect = 1.770e-31
Identity = 75/143 (52.45%), Postives = 94/143 (65.73%), Query Frame = 1
Query:    4 ITLTRRLVKLRDVKLAALVGDVKKEPVGYLQLSGFSKGAAQELEQAYRYLDANANG------GLRGVILDLRGNPGGLLEAAVDVSALFVPEGSSIVSIKGRNFQDVTYGSSNGPLRTASIPLVVLINGGTASAAEIVSGAVQ 414
            + + RRLVK+ D+KL   +G+ KKE +GY+QLS FS     E+ Q+   L   A        GLRG+++DLRGNPGGLL +AVDV +L +P GS IVS +GR F  V Y S   PL   +  LVVL+NG TASAAEIVSGAVQ
Sbjct:  206 VQIPRRLVKIPDIKLTTFLGE-KKEGIGYVQLSAFSGDTGAEMRQSILALQKAAERADPSAQGLRGLVVDLRGNPGGLLTSAVDVCSLLLPNGSDIVSARGRGFPGVLYRSRTEPLLDPATKLVVLVNGSTASAAEIVSGAVQ 347          
BLAST of mRNA_H-paniculata_contig34223.9145.1 vs. uniprot
Match: A0A7S4QMK2_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QMK2_9STRA)

HSP 1 Score: 127 bits (318), Expect = 1.780e-31
Identity = 77/143 (53.85%), Postives = 100/143 (69.93%), Query Frame = 1
Query:    4 ITLTRRLVKLRDVKLAALVGDVKKEPVGYLQLSGFSKGAAQELEQAY---RYLDANANGG---LRGVILDLRGNPGGLLEAAVDVSALFVPEGSSIVSIKGRNFQDVTYGSSNGPLRTASIPLVVLINGGTASAAEIVSGAVQ 414
            ++L R+ V++ DVKLAALVGD  KE +GY+ L+GF+  A  E+  +    + L  NA+GG   L+G++LDLRGNPGGLL +AVDV++L VP+GS IVS +GR F  V Y S   P+      LVVL+N  TASAAEIVSGAVQ
Sbjct:  433 VSLPRQTVRIPDVKLAALVGD-PKEGMGYISLTGFAANAGLEVRNSIIGLQRLAENASGGERSLQGLVLDLRGNPGGLLTSAVDVASLLVPKGSDIVSARGRGFPGVVYRSQVDPVLDPQTKLVVLVNSQTASAAEIVSGAVQ 574          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34223.9145.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L981_9PHAE3.060e-6787.68PDZ domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835Z050_9STRA9.330e-3960.14ClpP/crotonase-like domain-containing protein n=1 ... [more]
A0A7S3XNJ2_HETAK1.870e-3555.48Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2AM26_9STRA1.150e-3455.10Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A0G4F0N3_VITBC8.550e-3455.07PDZ domain-containing protein n=3 Tax=Vitrella bra... [more]
B7GBC3_PHATC2.880e-3352.45Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A0G4EX77_VITBC3.700e-3354.35PDZ domain-containing protein n=1 Tax=Vitrella bra... [more]
A0A7S4IQW6_9STRA1.880e-3253.15Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S1B4F4_9STRA1.770e-3152.45Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S4QMK2_9STRA1.780e-3153.85Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig34223contigH-paniculata_contig34223:622..1428 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score229.6
Seed ortholog evalue9.1e-58
Seed eggNOG ortholog2880.D7FJW2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Peptidase family S41
EggNOG OGs2RW0A@2759,COG0793@1
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size414
Cds size414
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930057.6537886-CDS-H-paniculata_contig34223:621..8321622930057.6537886-CDS-H-paniculata_contig34223:621..832Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34223 622..832 +
1691481129.1504154-CDS-H-paniculata_contig34223:621..8321691481129.1504154-CDS-H-paniculata_contig34223:621..832Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34223 622..832 +
1622930057.6703207-CDS-H-paniculata_contig34223:1225..14281622930057.6703207-CDS-H-paniculata_contig34223:1225..1428Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34223 1226..1428 +
1691481129.162942-CDS-H-paniculata_contig34223:1225..14281691481129.162942-CDS-H-paniculata_contig34223:1225..1428Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34223 1226..1428 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig34223.9145.1prot_H-paniculata_contig34223.9145.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig34223 622..1428 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig34223.9145.1

>prot_H-paniculata_contig34223.9145.1 ID=prot_H-paniculata_contig34223.9145.1|Name=mRNA_H-paniculata_contig34223.9145.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=138bp
EITLTRRLVKLRDVKLAALVGDVKKEPVGYLQLSGFSKGAAQELEQAYRY
LDANANGGLRGVILDLRGNPGGLLEAAVDVSALFVPEGSSIVSIKGRNFQ
DVTYGSSNGPLRTASIPLVVLINGGTASAAEIVSGAVQ
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mRNA from alignment at H-paniculata_contig34223:622..1428+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig34223.9145.1 ID=mRNA_H-paniculata_contig34223.9145.1|Name=mRNA_H-paniculata_contig34223.9145.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=807bp|location=Sequence derived from alignment at H-paniculata_contig34223:622..1428+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAATAACGCTAACGCGAAGATTAGTGAAGCTTCGAGACGTGAAACTGGC AGCGCTAGTCGGTGACGTAAAGAAGGAACCTGTTGGCTATCTACAGCTTT CCGGCTTCAGCAAGGGAGCGGCGCAAGAGCTCGAACAAGCCTACCGGTAC CTGGATGCCAATGCCAACGGGGGATTGCGGGGAGTTATCCTCGATTTACG GGGTAATCCAGGTACTGCGAAGTTAATTACATCGAAATTTGTGTTACAAC GACTGCGGGCGGAGGGTGTCTATGTTGTGTCGAAAATTTCAACAAGAAAA TCAACCTATGCTGCCCTCTAACAGGGCTAGAGATTTTTCACTCTTTATAT TGTGCATAAGTATAGATAGTTGCATCGAAACAGCAAAATGGCCAAAAGCA GATCCTAGAATATCAGGCCTATCACGGGAGCATGAGACCCTCACGGAAGG ACAGTGTCCCTTCCTGTCTGAATTTTGAGGACGAAGTCCCGTGATGAGCC CTCCATGACACAGAGGTTGGAGATTTGAGCTCCTTGAGGGTTTTAAGAGG GATACCATCGCTCATATCCTCTCTTGAATGACTTTTTTTTTCTTTTTTTT TCAGGTGGATTATTGGAGGCCGCTGTGGATGTCTCGGCGCTGTTCGTACC CGAGGGCAGCAGCATCGTGTCCATCAAGGGCCGTAACTTTCAAGACGTGA CGTACGGAAGCTCCAATGGTCCCTTGCGCACGGCATCCATCCCGCTTGTG GTGTTAATCAATGGAGGAACTGCTAGTGCTGCGGAAATCGTGTCCGGAGC TGTTCAG
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Coding sequence (CDS) from alignment at H-paniculata_contig34223:622..1428+

>mRNA_H-paniculata_contig34223.9145.1 ID=mRNA_H-paniculata_contig34223.9145.1|Name=mRNA_H-paniculata_contig34223.9145.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=828bp|location=Sequence derived from alignment at H-paniculata_contig34223:622..1428+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAATAACGCTAACGCGAAGATTAGTGAAGCTTCGAGACGTGAAACTGGC
AGCGCTAGTCGGTGACGTAAAGAAGGAACCTGTTGGCTATCTACAGCTTT
CCGGCTTCAGCAAGGGAGCGGCGCAAGAGCTCGAACAAGCCTACCGGTAC
CTGGATGCCAATGCCAACGGGGGATTGCGGGGAGTTATCCTCGATTTACG
GGGTAATCCAGGAAATAACGCTAACGCGAAGATTAGTGAAGCTTCGAGAC
GTGAAACTGGCAGCGCTAGTCGGTGACGTAAAGAAGGAACCTGTTGGCTA
TCTACAGCTTTCCGGCTTCAGCAAGGGAGCGGCGCAAGAGCTCGAACAAG
CCTACCGGTACCTGGATGCCAATGCCAACGGGGGATTGCGGGGAGTTATC
CTCGATTTACGGGGTAATCCAGGTGGATTATTGGAGGCCGCTGTGGATGT
CTCGGCGCTGTTCGTACCCGAGGGCAGCAGCATCGTGTCCATCAAGGGCC
GTAACTTTCAAGACGTGACGTACGGAAGCTCCAATGGTCCCTTGCGCACG
GCATCCATCCCGCTTGTGGTGTTAATCAATGGAGGAACTGCTAGTGCTGC
GGAAATCGTGTCCGGAGCTGTTCAGGTGGATTATTGGAGGCCGCTGTGGA
TGTCTCGGCGCTGTTCGTACCCGAGGGCAGCAGCATCGTGTCCATCAAGG
GCCGTAACTTTCAAGACGTGACGTACGGAAGCTCCAATGGTCCCTTGCGC
ACGGCATCCATCCCGCTTGTGGTGTTAATCAATGGAGGAACTGCTAGTGC
TGCGGAAATCGTGTCCGGAGCTGTTCAG
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