mRNA_H-paniculata_contig3420.9139.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3420.9139.1
Unique NamemRNA_H-paniculata_contig3420.9139.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig3420.9139.1 vs. uniprot
Match: D8LBU7_ECTSI (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBU7_ECTSI)

HSP 1 Score: 352 bits (902), Expect = 2.480e-119
Identity = 193/259 (74.52%), Postives = 217/259 (83.78%), Query Frame = 1 
Query:   13 DENVCALCKCAEDAASNLTQQKLVVNNKCGHRFHQACVEKEFVRRKAFPCPLCQTQVKRAGLTEKTLDELEVSRDITVRKRISKIFNRSEEDFGGDLRAYNDYLEEKEDLIYDITSGSKEEVEGAQAKVRAYEEQYRNEITENAAKRFDRERQVEEQLASARQMMESLKHYNQLEEARKQQHARKLKLEAQEVALGERDRVTAGLVDSIFM--DS--AEGIEGEAGK--AAGNAPAALPPGMRQMLNIPAPLPQRQSNQ 771
            DE VC LCK A+D ASN+TQQKLVVNNKCGHRFHQAC EKE +RRK FPCP CQ QV+RAGLTEKTLDELEV+RDITVRKRI+KIFNRSEEDFGGDLRAYNDYLE  ED+IY + SG K E + AQA VR YE+++R EIT+NAA++ DRE+ VEEQLA+ RQ  ES KHYNQLEEARKQQHARKLKLEAQEVALGERD VTA + D +F+  DS   EG++G  G+  A GNAPAA+P GMRQMLNIPAPLPQ QSNQ
Sbjct:    3 DELVCVLCKGAQDEASNITQQKLVVNNKCGHRFHQACAEKELLRRKTFPCPACQVQVRRAGLTEKTLDELEVARDITVRKRITKIFNRSEEDFGGDLRAYNDYLETMEDVIYGLCSGDKGEADRAQATVREYEDRHRGEITKNAARKVDREKVVEEQLAALRQQQESRKHYNQLEEARKQQHARKLKLEAQEVALGERDHVTATMGDGLFLFLDSLTGEGLDGAGGEPGANGNAPAAVPAGMRQMLNIPAPLPQPQSNQ 261
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BLAST of mRNA_H-paniculata_contig3420.9139.1 vs. uniprot
Match: A0A835Z320_9STRA (CDK-activating kinase assembly factor MAT1-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z320_9STRA)

HSP 1 Score: 198 bits (503), Expect = 4.940e-59
Identity = 121/248 (48.79%), Postives = 164/248 (66.13%), Query Frame = 1 
Query:   13 DENVCALCKCAEDAASNLTQQKLVVNNKCGHRFHQACVEKEFVRRKAFPCPLCQTQVKRAGLTEKTLDELEVSRDITVRKRISKIFNRSEEDFGGDLRAYNDYLEEKEDLIYDITSGSKEEVEGAQAKVRAYEEQYRNEITENAAKRFDRERQVEEQLASARQMMESLKHYNQLEEARKQQHARKLKLEAQEVALGERDRVTAGLVDSIFMDSAEGIEGEAGKAAGNAPAALPPGMRQMLNIPAPLPQ 756
            DE+VC++CK +ED    +TQ KL+VNN CGH+F  +C ++EF R+K F CP C+  VKR GLT+KTLDEL V +++T R+RI KIFN++EEDF   L  YN+YL E EDLIYD+T+G   +VE   AK+RAYE+ +R EI +N A+  D +R VE+ +A+  Q  E+ KH  Q E  R +   RK+  EA EVALGER+ VT+ L+D + +    G +G    A   A   L PG R ++ I APLPQ
Sbjct:    2 DEDVCSICK-SED---KITQDKLLVNNLCGHKFCGSCCDREFSRKKVFQCPKCKKDVKRTGLTQKTLDELAVQKELTHRRRILKIFNKTEEDFET-LLEYNNYLAEVEDLIYDLTNGV--DVEACLAKIRAYEDAHREEIIQNQARDMDTQRVVEQTIAAHAQQEETRKHDKQAEAQRLRLKRRKMHAEAVEVALGEREAVTSTLMDVLVLGDGGGADGXXXAAPAGA---LLPGQRMLIQINAPLPQ 239
[Close]
BLAST of mRNA_H-paniculata_contig3420.9139.1 vs. uniprot
Match: A0A1E7FR87_9STRA (RING-type domain-containing protein n=3 Tax=Bacillariaceae TaxID=33852 RepID=A0A1E7FR87_9STRA)

HSP 1 Score: 148 bits (373), Expect = 1.690e-39
Identity = 88/211 (41.71%), Postives = 133/211 (63.03%), Query Frame = 1 
Query:    4 QQHDENVCALCKCAEDAASNLTQQKLVVNNK---CGHRFHQACVEKEFVRRKAFPCPLCQTQVKRAGLTEKTLDELEVSRDITVRKRISKIFNRSEEDFGGDLRAYNDYLEEKEDLIYDITSGSKEEVEGAQAKVRAYEEQYRNEITENAAKRFDRERQVEEQLASARQMMESLKHYNQLEEARKQQHARKLKLEAQEVALGERDRVTAGL 627
            +Q D   CA+C  AE  +SNLT Q  + NN    CGH+F  +C+++E  RR+ FPCP+C+T VK+  L+ +TLD++   +D + R+R+ K+FN++++DF   L  YN+YLEE ED+IY I +  +   E  + K++AYEE +R EI    ++R D ER +++Q+AS ++  E  K   + EE       RK K E+ EV LGERD V+A L
Sbjct:    8 EQEDLFSCAICGIAEGDSSNLTSQSQLQNNSTVGCGHQFCSSCIDRELSRRREFPCPICETPVKKVTLSTRTLDDVLCEKDTSWRRRVMKVFNKTQKDFPS-LLEYNNYLEEVEDMIYSIVN-EEPNAEECKGKIKAYEENHRTEIVIRQSQRADAERAIQDQIASEQREAERRKRELREEEKAIALTKRKFKQESAEVLLGERDEVSAEL 216
[Close]
BLAST of mRNA_H-paniculata_contig3420.9139.1 vs. uniprot
Match: A0A7S1GHB7_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GHB7_CYCTE)

HSP 1 Score: 142 bits (359), Expect = 1.500e-37
Identity = 89/204 (43.63%), Postives = 129/204 (63.24%), Query Frame = 1 
Query:   25 CALCKCAEDAASNLTQQKLVVNNK---CGHRFHQACVEKEFVRRKAFPCPLCQTQVKRAGLTEKTLDELEVSRDITVRKRISKIFNRSEEDFGGDLRAYNDYLEEKEDLIYDITSGSKEEVEGAQAKVRAYEEQYRNEITENAAKRFDRERQVEEQLASARQMMESLKHYNQLEEARKQQHARKLKLEAQEVALGERDRVTAGL 627
            CA+C  AE  +SNLT Q  +  N    CGH+F  ACVE+E  RRK FPCP+C+T VKR  L+ +TLD+++  +D + R+R++K+FN+ E DF   L  YN+YLEE ED+IY I +  +   E  +AKV+AYEE  +++I    ++R D ER + +++A+ ++ +E  K     EE       RK K EA EV LGER+ V+A L
Sbjct:   10 CAICGTAEGDSSNLTTQSSLQTNATVGCGHQFCTACVERELSRRKEFPCPICETPVKRVTLSTRTLDDVQCEKDTSWRRRVTKVFNKIESDFST-LLEYNNYLEEVEDIIYAIVN-EEPNAEEMKAKVKAYEEANKSQIVIRQSQRADEERSIADRIAAEQREVERRKREVIEEERAIALTKRKYKQEAAEVLLGEREEVSAEL 211
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BLAST of mRNA_H-paniculata_contig3420.9139.1 vs. uniprot
Match: A0A6U3Q473_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3Q473_9STRA)

HSP 1 Score: 141 bits (355), Expect = 6.930e-37
Identity = 85/205 (41.46%), Postives = 129/205 (62.93%), Query Frame = 1 
Query:   25 CALCKCAEDAASNLTQQKLVVNNK---CGHRFHQACVEKEFVRRKAFPCPLCQTQVKRAGLTEKTLDELEVSRDITVRKRISKIFNRSEEDFGGDLRAYNDYLEEKEDLIYDITSGSKEEVEGAQAKVRAYEEQYRNEITENAAKRFDRERQVEEQLASARQMMESLKHYNQLEEARKQQHARKLKLEAQEVALGERDRVTAGLV 630
            CA+C  +E  +SNLT    +  N    CGH+F   CVE+E  RRK FPCP+C+T VKR  L+ +TLD+++  +D + R+R+ K++N+ E DF   L  YN+YLEE ED+IY I +  +   E  +AKV+AYEE  + EI    ++R D ER + +++A+ ++         + EE  K+Q   KLKL++ +VALGER+ V+A L+
Sbjct:   16 CAVCGVSEGDSSNLTTVTALYTNATVGCGHQFCSTCVERELARRKVFPCPVCETAVKRVTLSTRTLDDVQCEKDTSWRRRVLKVYNKVETDFPS-LLEYNNYLEEVEDIIYSIVN-EEPNAEEVKAKVKAYEEANKGEIVIRQSQRADEERSMADRIAAEQREAXXXXREFEEEEKFKKQTKAKLKLQSTQVALGEREEVSAELI 218
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BLAST of mRNA_H-paniculata_contig3420.9139.1 vs. uniprot
Match: A0A7R9W6S0_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W6S0_9STRA)

HSP 1 Score: 140 bits (354), Expect = 8.250e-37
Identity = 86/212 (40.57%), Postives = 136/212 (64.15%), Query Frame = 1 
Query:    7 QHDENV--CALCKCAEDAASNLTQQKLVVNNK---CGHRFHQACVEKEFVRRKAFPCPLCQTQVKRAGLTEKTLDELEVSRDITVRKRISKIFNRSEEDFGGDLRAYNDYLEEKEDLIYDITSGSKEEVEGAQAKVRAYEEQYRNEITENAAKRFDRERQVEEQLASARQMMESLKHYNQLEEARKQQHARKLKLEAQEVALGERDRVTAGL 627
            ++DE++  CA+C   E  +SNLT Q  +  N    CGH+F  ACVE+E  RR+ FPCP+C+T+VKR  L+ +TLD+++  +D + R+R+ K++N++E DF   LR YNDYLEE ED+I+ I +  + + E  +AK+R YEE  +++I    ++R D ER + +++A+ ++  E  K      E    +  R+LK E+ EV LGER+ V+A L
Sbjct:    4 ENDEDLFRCAVCGVQEGDSSNLTTQSALWTNATVGCGHQFCTACVERELSRRRVFPCPICETEVKRVTLSTRTLDDVQCEKDTSWRRRVMKVYNKAESDFPS-LREYNDYLEEVEDIIFKIVN-EEPDAEEMKAKLRTYEEANKSQIVIRQSQRADEERSIADRIAAEQRDAERRKREFFETERAIAETKRQLKKESTEVMLGEREEVSAEL 213
[Close]
BLAST of mRNA_H-paniculata_contig3420.9139.1 vs. uniprot
Match: A0A1Z5JMD5_FISSO (CDK-activating kinase assembly factor MAT1 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JMD5_FISSO)

HSP 1 Score: 140 bits (353), Expect = 1.220e-36
Identity = 81/204 (39.71%), Postives = 132/204 (64.71%), Query Frame = 1 
Query:   25 CALCKCAEDAASNLTQQKLVVNN---KCGHRFHQACVEKEFVRRKAFPCPLCQTQVKRAGLTEKTLDELEVSRDITVRKRISKIFNRSEEDFGGDLRAYNDYLEEKEDLIYDITSGSKEEVEGAQAKVRAYEEQYRNEITENAAKRFDRERQVEEQLASARQMMESLKHYNQLEEARKQQHARKLKLEAQEVALGERDRVTAGL 627
            CA+C  AE  +SNLT Q  ++ N   KCGH+F Q+CV++EF RR+ FPCP+C T VKR  LT++TLD+++  +D + R+R+ K++N+++ DF   L  YN+YLE  ED+I+ I +  +   E  + K++ YE+  ++ I    ++R D ER +++++A+ ++  E ++   Q +E    Q  RK K E+ EV LGER+ V+A L
Sbjct:   12 CAICGTAEGDSSNLTSQASLMTNATVKCGHQFCQSCVDREFARRREFPCPVCSTMVKRVTLTQRTLDDVQCEKDTSWRRRVLKVYNKTQADFET-LLEYNNYLEMVEDMIFSIVN-EEPNAEECKNKIKDYEQANKSAIVIRQSQRADEERSIQDRIAAEQREAEQMRLLAQEDEKYMAQAKRKWKQESTEVLLGEREEVSAEL 213
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BLAST of mRNA_H-paniculata_contig3420.9139.1 vs. uniprot
Match: B7G382_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G382_PHATC)

HSP 1 Score: 138 bits (347), Expect = 9.160e-36
Identity = 78/204 (38.24%), Postives = 131/204 (64.22%), Query Frame = 1 
Query:   25 CALCKCAEDAASNLTQQKLVVNN---KCGHRFHQACVEKEFVRRKAFPCPLCQTQVKRAGLTEKTLDELEVSRDITVRKRISKIFNRSEEDFGGDLRAYNDYLEEKEDLIYDITSGSKEEVEGAQAKVRAYEEQYRNEITENAAKRFDRERQVEEQLASARQMMESLKHYNQLEEARKQQHARKLKLEAQEVALGERDRVTAGL 627
            CALC  AE  +SNL+    +  N   +CGH+F  +C+++E VR++ FPCP+CQT VKR  LT ++LD+++  +D + R+R+ K+FN++E DF   L  +N+YLE+ ED+IY I +  + + E  +AK++ YE  ++ EI    ++R D ER +++++A+ ++  E L+     EE       ++LK E+ +V LGER+ V+A L
Sbjct:   12 CALCGTAEGDSSNLSSHTSLQTNATVRCGHQFCNSCIDRELVRKREFPCPVCQTPVKRVTLTVRSLDDVQCEKDTSWRRRVLKVFNKTEPDFSS-LLEFNNYLEQVEDMIYSIVN-EEPDAEACKAKIKEYENAHKTEIVIRQSQRADEERSIQDRIAAEQRSTERLRREAFDEEKAVANAKKRLKQESTQVLLGEREEVSAEL 213
[Close]
BLAST of mRNA_H-paniculata_contig3420.9139.1 vs. uniprot
Match: A0A7S3DRW1_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DRW1_9STRA)

HSP 1 Score: 132 bits (332), Expect = 2.610e-33
Identity = 80/204 (39.22%), Postives = 126/204 (61.76%), Query Frame = 1 
Query:   25 CALCKCAEDAASNLTQQKLVVNN---KCGHRFHQACVEKEFVRRKAFPCPLCQTQVKRAGLTEKTLDELEVSRDITVRKRISKIFNRSEEDFGGDLRAYNDYLEEKEDLIYDITSGSKEEVEGAQAKVRAYEEQYRNEITENAAKRFDRERQVEEQLASARQMMESLKHYNQLEEARKQQHARKLKLEAQEVALGERDRVTAGL 627
            CA+C  AE  ASNL+ Q  +  N   +CGH+F  +C+++E VRR+ FPCP+CQT VKR  LT ++LD ++  +D + R+RI  ++N+SE DF   L  YN+YLE+ ED+IY I +  +   E  +AKV+ YE++ + +I    ++R D ER +++++A  +++ E  +     EE       +K K E  EV LG R+ V+A L
Sbjct:   37 CAICGTAEGDASNLSNQTSLQTNATVRCGHQFCNSCLDRELVRRREFPCPICQTAVKRVNLTSRSLDHVQCEKDTSWRRRIISVYNKSENDFPS-LLEYNNYLEQVEDMIYAIVN-EEPAAEEIKAKVKEYEQENKAQIVIRQSQRADEERSIQDRIAYEQRLAEQTRLAAVEEEKHIAIAKKKFKTETTEVLLGYREEVSAEL 238
[Close]
BLAST of mRNA_H-paniculata_contig3420.9139.1 vs. uniprot
Match: D0N908_PHYIT (RING-type domain-containing protein n=13 Tax=Peronosporaceae TaxID=4777 RepID=D0N908_PHYIT)

HSP 1 Score: 115 bits (289), Expect = 4.620e-27
Identity = 70/202 (34.65%), Postives = 117/202 (57.92%), Query Frame = 1 
Query:   13 DENVCALCKC---AEDAASNLTQQKLVVNNKCGHRFHQACVEKEFVRRKAFPCPLCQTQVKRAGLTEKTLDELEVSRDITVRKRISKIFNRSEEDFGGDLRAYNDYLEEKEDLIYDITSGSKEEVEGAQAKVRAYEEQYRNEITENAAKRFDRERQVEEQLASARQMMESLKHYNQLEEARKQQHARKLKLEAQEVALGERD 609
            DE     C C   AED ++ L  +  ++ +KCGHRF   C+++EF  ++   CP CQ  VK++ L +KT++EL  +++ +VRK+++K +N++E+DF   L  YNDYLE  E+LI+D+  G   E   AQ + + Y +++   I  N AK+ D ER++ + +A  +            E+++ +    + K +  EVALGERD
Sbjct:    8 DELALRCCVCGTSAEDDSNYLNTKMKMLISKCGHRFCDHCIKREFQHQREISCPACQKPVKKSQLQDKTIEELNFAKETSVRKKVTKDYNKTEDDFDT-LEEYNDYLETLENLIFDLVYGDDAEKAAAQKQWKQYRQEHAIAIATNDAKKADEERRIAQLIAEQQXXXXXXXXXXXKEDSQFEADLERQKAQLMEVALGERD 208
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3420.9139.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBU7_ECTSI2.480e-11974.52RING-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A835Z320_9STRA4.940e-5948.79CDK-activating kinase assembly factor MAT1-domain-... [more]
A0A1E7FR87_9STRA1.690e-3941.71RING-type domain-containing protein n=3 Tax=Bacill... [more]
A0A7S1GHB7_CYCTE1.500e-3743.63Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A6U3Q473_9STRA6.930e-3741.46Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7R9W6S0_9STRA8.250e-3740.57Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A1Z5JMD5_FISSO1.220e-3639.71CDK-activating kinase assembly factor MAT1 n=2 Tax... [more]
B7G382_PHATC9.160e-3638.24Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S3DRW1_9STRA2.610e-3339.22Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
D0N908_PHYIT4.620e-2734.65RING-type domain-containing protein n=13 Tax=Peron... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3420contigH-paniculata_contig3420:12078..17365 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score359.8
Seed ortholog evalue1.1e-96
Seed eggNOG ortholog2880.D8LBU7
Preferred nameTFB3
KEGG koko:K10842
KEGG Pathwayko03022,ko03420,map03022,map03420
KEGG ModuleM00290
Hectar predicted targeting categoryother localisation
GOsGO:0000079,GO:0000109,GO:0000112,GO:0000428,GO:0001932,GO:0001934,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005675,GO:0006139,GO:0006259,GO:0006281,GO:0006289,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0008047,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009889,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010562,GO:0010604,GO:0016070,GO:0016310,GO:0016538,GO:0016567,GO:0016591,GO:0016740,GO:0018130,GO:0019207,GO:0019209,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019538,GO:0019787,GO:0019887,GO:0030234,GO:0030295,GO:0030880,GO:0031323,GO:0031325,GO:0031326,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032147,GO:0032268,GO:0032270,GO:0032446,GO:0032774,GO:0032806,GO:0032991,GO:0033554,GO:0033674,GO:0034641,GO:0034645,GO:0034654,GO:0036211,GO:0042325,GO:0042327,GO:0043085,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043539,GO:0043549,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0045737,GO:0045787,GO:0045859,GO:0045860,GO:0045937,GO:0046483,GO:0046872,GO:0046914,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051252,GO:0051338,GO:0051347,GO:0051716,GO:0051726,GO:0055029,GO:0060255,GO:0061575,GO:0061630,GO:0061659,GO:0061695,GO:0065007,GO:0065009,GO:0070013,GO:0070647,GO:0070816,GO:0070985,GO:0071704,GO:0071900,GO:0071902,GO:0080090,GO:0090304,GO:0090575,GO:0097659,GO:0098772,GO:0140096,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1902494,GO:1902554,GO:1902911,GO:1903506,GO:1904029,GO:1904031,GO:1990234,GO:1990391,GO:2000112,GO:2001141
EggNOG free text desc.cyclin-dependent protein serine/threonine kinase activator activity
EggNOG OGsCOG5220@1,KOG3800@2759
Ec32 ortholog descriptionZinc finger, RING/FYVE/PHD-type
Ec32 orthologEc-27_002640.1
COG Functional cat.DKL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03021,ko03400
Exons7
Model size771
Cds size771
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930056.7786524-CDS-H-paniculata_contig3420:12077..121871622930056.7786524-CDS-H-paniculata_contig3420:12077..12187Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3420 12078..12187 +
1691481128.869117-CDS-H-paniculata_contig3420:12077..121871691481128.869117-CDS-H-paniculata_contig3420:12077..12187Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3420 12078..12187 +
1622930056.7920313-CDS-H-paniculata_contig3420:13317..133871622930056.7920313-CDS-H-paniculata_contig3420:13317..13387Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3420 13318..13387 +
1691481128.8827307-CDS-H-paniculata_contig3420:13317..133871691481128.8827307-CDS-H-paniculata_contig3420:13317..13387Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3420 13318..13387 +
1622930056.805044-CDS-H-paniculata_contig3420:13709..137951622930056.805044-CDS-H-paniculata_contig3420:13709..13795Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3420 13710..13795 +
1691481128.8921387-CDS-H-paniculata_contig3420:13709..137951691481128.8921387-CDS-H-paniculata_contig3420:13709..13795Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3420 13710..13795 +
1622930056.8154316-CDS-H-paniculata_contig3420:14701..148871622930056.8154316-CDS-H-paniculata_contig3420:14701..14887Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3420 14702..14887 +
1691481128.8995445-CDS-H-paniculata_contig3420:14701..148871691481128.8995445-CDS-H-paniculata_contig3420:14701..14887Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3420 14702..14887 +
1622930056.825724-CDS-H-paniculata_contig3420:15451..155061622930056.825724-CDS-H-paniculata_contig3420:15451..15506Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3420 15452..15506 +
1691481128.907179-CDS-H-paniculata_contig3420:15451..155061691481128.907179-CDS-H-paniculata_contig3420:15451..15506Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3420 15452..15506 +
1622930056.8392324-CDS-H-paniculata_contig3420:16337..164761622930056.8392324-CDS-H-paniculata_contig3420:16337..16476Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3420 16338..16476 +
1691481128.9145474-CDS-H-paniculata_contig3420:16337..164761691481128.9145474-CDS-H-paniculata_contig3420:16337..16476Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3420 16338..16476 +
1622930056.8546762-CDS-H-paniculata_contig3420:17240..173651622930056.8546762-CDS-H-paniculata_contig3420:17240..17365Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3420 17241..17365 +
1691481128.9249039-CDS-H-paniculata_contig3420:17240..173651691481128.9249039-CDS-H-paniculata_contig3420:17240..17365Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3420 17241..17365 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3420.9139.1prot_H-paniculata_contig3420.9139.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3420 12078..17365 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3420.9139.1

>prot_H-paniculata_contig3420.9139.1 ID=prot_H-paniculata_contig3420.9139.1|Name=mRNA_H-paniculata_contig3420.9139.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=257bp
MQQHDENVCALCKCAEDAASNLTQQKLVVNNKCGHRFHQACVEKEFVRRK
AFPCPLCQTQVKRAGLTEKTLDELEVSRDITVRKRISKIFNRSEEDFGGD
LRAYNDYLEEKEDLIYDITSGSKEEVEGAQAKVRAYEEQYRNEITENAAK
RFDRERQVEEQLASARQMMESLKHYNQLEEARKQQHARKLKLEAQEVALG
ERDRVTAGLVDSIFMDSAEGIEGEAGKAAGNAPAALPPGMRQMLNIPAPL
PQRQSNQ
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mRNA from alignment at H-paniculata_contig3420:12078..17365+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3420.9139.1 ID=mRNA_H-paniculata_contig3420.9139.1|Name=mRNA_H-paniculata_contig3420.9139.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5288bp|location=Sequence derived from alignment at H-paniculata_contig3420:12078..17365+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAACAGCACGACGAGAACGTGTGCGCCCTGTGCAAATGTGCGGAGGA
TGCGGCGAGCAATCTTACGCAGCAAAAACTCGTCGTCAACAACAAGTGTG
GCCATCGCTTGTGAGTTGCCATACGAGAAACCTCGATGCAGCAGTATGTA
ACTGAACCATAACGGTTATAGATGTACCCCGTATGCACAGTATTTAAAAT
GGACTGTTAGCAGGTTAATTAAACCACGCAGGGAACATTGCACTGTTGTT
TGTTCCCATCTACAGCACGTAATATGCGAGCGAGGTCTGTTGTATGAGAT
GGTTGTATTGACTACGCCGTGCATGCCAGGCCGTGCTCTTGTACAGTGTT
GTTGGTGCAAGTCAGTACTTGATGGCGGAGCAGGTGAGTTCTGAGGAACG
TTCCGTGAGGTACTTGAACGAGTAATCCGGCACACCAGAGATAAGTGTGT
AAGGTTGAGCTCGTTCTGTGGGCAGCCCGATATTCACTAATGTCTCAGTT
AGCGAAGTGGTGTCGCCTGCCTAGTAGTAGGCCTTACCCGCCTGTCTAAC
TATTCATGGTTGGTTGTAGTATTTGCTTTTACTTTTACTTCGATGTAAAG
TTTCCCCTCGGGACAACTATGAATGCTTGCAAATGGTTTTCACAAAAAAC
TGAAAGTATTCACTTGAGTTTCAGAATGAGCTCGTGTATTCTATGTGCCC
CCGACCATCCACGACTGCTAATAATACTCGTAAATTGAATGGACAGGGGT
GGATAATTTATTCTATGTATCCGCTTATACTAAAACTCAGACGAATACTT
GTTAATTTACGTGGCGAATACGCCAAATATTCGATTTTTTTTGCGGGGGG
TGTAACGTTTCCTGCCCGACCTCCAATAACCTGACTCCAGGGTCGTTGCC
ACCCCGTGGATCGGCTCAATGTTTGAGCGATTGTAGACGCTGCCGGGACC
CGATTTGACACTGGTTAGGCTAGATGTAAGGGTTACGGTTAGGGTCTTGC
TCAGTCTTGCTCACAGATTTACCGCGCGCGATTTCGATAACAACAAAATG
TGGAATCAACCATTTTGTAGCTATTAGACAGCCAGTTGTCACGTCGCCTT
ATCCTGAGAGAATAGGCACCGGATATAGCAACAAGGGAGCTGCACGTAAC
ATCTCTCTCACATACAACATATGAATAAGACAGTCATGTATAACGTAAGT
TTGCTCGCCTCTGTCCTCCCTTCTTTCCGCTGGCTCGCAGCCACCAGGCG
TGCGTTGAGAAGGAATTTGTGCGACGGAAAGCGTTCCCATGCCCACTGTG
CCAAACTCAGGTATGACTCTCTCCACTTTCTTACGGTTAGTTCATGTATT
CGGGACTGTTTATAGATTCAGCAGTGACAGAAAGATCTCGAATAATTCTT
GAGTCATTTATACTAGTATTTTCTTTGACGCACGGTTGTCATCATCGTCA
ACCGCAATCGGATTTCATCCAGAGAAACAAGCAGGAACCCCCACCGACAA
CACCATACAAGAAAACGCCTCCGAACGATACCACCAAAAAATCCTTTGAT
AATCTCCATCAAGACAAGACTTGGTGGCGCGGTCTCCCCGTTTAGGTTCA
CGGGTTTTATGTATTTCTTCGGTCTTTTTCAGGTCAAAAGAGCAGGCTTG
ACAGAGAAGACGCTGGACGAGCTAGAGGTATCGAGGGACATCACGGTGCG
CAAAAGGATATCCAAGATGTGAGTTTAACCACACAACCCCCAGTGACATT
TTCTGGCACAATCACAACCTAGGTAGGGAATCGATGCTCTCCCGTGCCAT
ATAGCCCTATTGTAAGCCCTACAAAATGACTATACGCATAGCATGCGGAT
CGAAGAGACGGAGGGGCGGACCCGGGGGGGAGGGGGTGAAATCTACAGAG
TCTCTGGTAGGTCAAAAGGCAGCAGCTGATAAGAGAACAACTTGAGAACT
TCAAGCAGGGGCAAGGATAGGAACCTTACACATTAACTACACCATGACAG
TGAAAACAACATGTATGCCTCCTGCCAAGGATAACTTCAACAACAGGACA
GAAAGCATGGACAGCAACGTCGGGATACGGTTTGAAACATGTACAAGTAC
GATCAGAAGCCATATCAACCTCACCTATTCAAAATTGGTGGTATATTCAG
TCGATTTTATCCTGGCGAACGACTGATTTCACAAACCGGCAAATATAGGC
AGAGGGGGGAAGGGGGGGGGGGGGGGGGGATTGGGGAGGGGTTTTCCAGA
CGCGACTGAGGTTCACTACACCAAGTCTTGTGAAACTCGCCTGCTTCTCG
ACTGTGGTGCTGTTGCTGACCTAGTTGCGCAATGCGCACTCGTGCTCGTT
GGGGCTAATGATCAATCGTTTCGGTAGAACCGAGAGGACACCGTCCCACA
GCTGTAGCAGGAAAAATCGACCTCCAACCAGATGCGCAAGTGGCGACATC
ACTCTCCCCTATCATATCCCTACCGTAATCAATAACCGCAAACGAAATCA
CGCCACGTACAGGAAAGAGAAAGTGACTCGGCTGCCACGCCACGCTGACT
ACTCTCTCTTCCTGTTTGTAACGTTCGAACTCTCAACCGTTTTGATTTCG
TTTTTCTTTTCTTGACTTTGACAGTTTCAATCGATCGGAGGAAGACTTTG
GGGGCGACTTACGGGCGTATAACGACTACCTGGAAGAGAAGGAGGATCTC
ATATACGACATCACTTCCGGGAGCAAAGAAGAAGTCGAAGGGGCGCAGGC
CAAAGTACGCGCCTACGAAGAGCAGTATCGAAATGAGATCACAGAAAATG
CTGCCAAGAGGTGTGGGCTGGATTGCGATTTGGGCTGAGTTAGGAGCCTG
CCAGTTTACCATGAATGTACCCAGGCCAGGTATCTCGGTATTGGTGAGAT
GCTTGCGTATGTGCGTGTTGGTCTTGCACTCTGTACAGCACAGCTCATAG
CCAGGTGCAGTAGCTGTACAAGAACCACCGGTGCGGGTCGAGTGTTCTTG
AATGTTAATCACTGTGCTTGGTGCTGTCGGAGGATGAATGTATATGAAGA
TAAGAACAACCCACTGACCATGCTAGCACATTTGTTTTTCTTGCTTTTGA
TGACGCCATCAAACGCCTTGCATATCCTTCGTGATTTGAGGCAAATATTA
TCCTAATGTGTCTTCGCAATTTTTAGTCTTGGTTCGGTACGAAATGAGGA
TGTTCTGTCGCAGCAAACGAACCCGTTACAACGGGGCAACAAATGAAAGG
ACACCTACTCCCGGACCCTCCAGCACAATTAACATACACACCTATACATT
CGAATCAAACACGCTTTGCAGTCGTGATGAAGCGAACTCAATATTTCCGG
ATGACGACGATGATGATGATGCAGGTTCGATCGAGAGAGGCAAGTGGAAG
AGCAGCTGGCATCTGCGCGACAAATGATGGTCAGTCAGTTGAACGTTTCA
AGTCTTAACCCCTACCTACCAGCTTTTAGGGCCGTTCGCAGATAATGTAT
TTTACCCGTAGATAGTGTCTTGTATCCCTTTCGGGCCGCTGCACGTGTGT
TTCAAGAGGTTTCAATTTATTTTACAAGCTGATTAATCCCCGTGCACCGT
GCAACGTGACGTGTATATCTCTTGCTCTAGAGCAGTGCTCATTTCATGAG
GTGGTGCACTGTTGTCATCGTGGAGTGTTTGGTGTCGTAACGGCAGCGTT
TGCTCCAGGCCATATCGAGATCGGGTTGATGGGATGGCGAAGGCTACAGA
TCGCCCGAGCGCGCCCGCCTGTGCATTTGATGACCCAGCCTCGTTAGAGA
CAGTATCAACTTCCATCGCTAAATATCCTAGCGTAAAATAGAGGCGTATA
CGCGGTTTCAGGTCGTACGGTGATGTTATTATTAACGCAAAAAAAAAAAC
GTTCCTTTTTTGTGTGTTTTTTTCGATCTTCGGCACCACCAAAGTGGGAT
GATTCACCGCTGTTTGAAAAAATTAACCCTTCATGCGTTGGCGTTCTTGT
GCATCCCTCTCTCCCTCTTTCTCTCTGTCGCACACAGACCGTTTACATGA
CGTTTTTTTTCCTTTCGCTTCATTATGCATCAATTACACTGGTGCAACTC
TCTCTTTGCGACTCATTGTTTTATCCGCAATTCGCACTTTTGTCCTGCTT
TCTGTGTGTCTACGCGTACGTGTCGAGCACACAGGTAATCCACGTCCCGC
GTTGCCGTATCGATACTCCACCATGTGCCGTTGGGACCGGCTGTCCATTG
TCTCTTGCAGGAAAGCCTGAAGCATTACAACCAGCTTGAGGAAGCGCGCA
AGCAGCAGCACGCGAGAAAGCTCAAGTTAGAAGCGCAGGAGGTGGCTTTA
GGGGAGCGAGATCGGGTGACGGCCGGCTTAGTGGACAGCATTTTCATGGG
TGAGAAGAGGGAGGTGAATTGGGATATGCTCCTGGGATGGGGTATCTTGT
GTTATTTGTTTCGATAGATTTAATTTTCATCCCCGAGCAGAGGTTGTTGC
TGTAAAGGGGCTAAGAAAAACTTTCCTTGAGCATGTGTAGCTCAACAGAG
CAGCGGCGAAGGCGTTTACCGGAGATATTCGAATTTGTGCAGTATGTGCC
TCGTTTTCACAGTATGGTGGGGCGGTTCATGTTGCCTCTTTGTTTTTGGC
GCCATACTTTGTATTATTTTTTCGAAAACGCGCTTGGATGTTTGTGGGGG
AGGGGCGACGGGGGAGAAGGGATACACGCAACAACAGGCGGTGGGTTCAG
TGTCCCAGAATTTTGTGTGGACGTCGATAAACAGAGACTGAGCGCCCGTT
TTTCCTCTTTTCCTTTTTGCAAAGCGTTGCTAGTTTGGTTAACGTTTTTC
CGTGTCCCTTATTCTTTTGGATCGATTATGATTATTTTCTGCTCGCGATA
TTTCGCGGACTGCCTACCATGCGCCTGGAGCTAGAACCTCCTTGCGGACG
TGAACTCGTAATGAATAAATATAACATAAACATGTTAATAAAACGCTTCC
AGCCGGACATTAGTCGTCTCATGCCCACTTCCACGTGCACGTCAGCGAGC
CATTTTGAATAACAAACCTTTGTCGCTGTTTTACGTTGCTTCGTCTCTTG
GATACCTTTCATGCTTCGCCTGTAACGCTGAATGGGGTTTTCTGGGTGGG
GCGGGGGGTGCAGATAGTGCAGAGGGCATCGAGGGAGAAGCTGGGAAGGC
TGCAGGCAACGCACCTGCAGCGCTACCTCCCGGAATGCGACAGATGCTCA
ACATTCCTGCGCCCTTGCCGCAGCGTCAGAGCAACCAG
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Coding sequence (CDS) from alignment at H-paniculata_contig3420:12078..17365+

>mRNA_H-paniculata_contig3420.9139.1 ID=mRNA_H-paniculata_contig3420.9139.1|Name=mRNA_H-paniculata_contig3420.9139.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1542bp|location=Sequence derived from alignment at H-paniculata_contig3420:12078..17365+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAACAGCACGACGAGAACGTGTGCGCCCTGTGCAAATGTGCGGAGGA
TGCGGCGAGCAATCTTACGCAGCAAAAACTCGTCGTCAACAACAAGTGTG
GCCATCGCTTATGCAACAGCACGACGAGAACGTGTGCGCCCTGTGCAAAT
GTGCGGAGGATGCGGCGAGCAATCTTACGCAGCAAAAACTCGTCGTCAAC
AACAAGTGTGGCCATCGCTTCCACCAGGCGTGCGTTGAGAAGGAATTTGT
GCGACGGAAAGCGTTCCCATGCCCACTGTGCCAAACTCAGCCACCAGGCG
TGCGTTGAGAAGGAATTTGTGCGACGGAAAGCGTTCCCATGCCCACTGTG
CCAAACTCAGGTCAAAAGAGCAGGCTTGACAGAGAAGACGCTGGACGAGC
TAGAGGTATCGAGGGACATCACGGTGCGCAAAAGGATATCCAAGATGTCA
AAAGAGCAGGCTTGACAGAGAAGACGCTGGACGAGCTAGAGGTATCGAGG
GACATCACGGTGCGCAAAAGGATATCCAAGATTTTCAATCGATCGGAGGA
AGACTTTGGGGGCGACTTACGGGCGTATAACGACTACCTGGAAGAGAAGG
AGGATCTCATATACGACATCACTTCCGGGAGCAAAGAAGAAGTCGAAGGG
GCGCAGGCCAAAGTACGCGCCTACGAAGAGCAGTATCGAAATGAGATCAC
AGAAAATGCTGCCAAGAGTTTCAATCGATCGGAGGAAGACTTTGGGGGCG
ACTTACGGGCGTATAACGACTACCTGGAAGAGAAGGAGGATCTCATATAC
GACATCACTTCCGGGAGCAAAGAAGAAGTCGAAGGGGCGCAGGCCAAAGT
ACGCGCCTACGAAGAGCAGTATCGAAATGAGATCACAGAAAATGCTGCCA
AGAGGTTCGATCGAGAGAGGCAAGTGGAAGAGCAGCTGGCATCTGCGCGA
CAAATGATGGTTCGATCGAGAGAGGCAAGTGGAAGAGCAGCTGGCATCTG
CGCGACAAATGATGGAAAGCCTGAAGCATTACAACCAGCTTGAGGAAGCG
CGCAAGCAGCAGCACGCGAGAAAGCTCAAGTTAGAAGCGCAGGAGGTGGC
TTTAGGGGAGCGAGATCGGGTGACGGCCGGCTTAGTGGACAGCATTTTCA
TGGGAAAGCCTGAAGCATTACAACCAGCTTGAGGAAGCGCGCAAGCAGCA
GCACGCGAGAAAGCTCAAGTTAGAAGCGCAGGAGGTGGCTTTAGGGGAGC
GAGATCGGGTGACGGCCGGCTTAGTGGACAGCATTTTCATGGATAGTGCA
GAGGGCATCGAGGGAGAAGCTGGGAAGGCTGCAGGCAACGCACCTGCAGC
GCTACCTCCCGGAATGCGACAGATGCTCAACATTCCTGCGCCCTTGCCGC
AGCGTCAGAGCAACCAGATAGTGCAGAGGGCATCGAGGGAGAAGCTGGGA
AGGCTGCAGGCAACGCACCTGCAGCGCTACCTCCCGGAATGCGACAGATG
CTCAACATTCCTGCGCCCTTGCCGCAGCGTCAGAGCAACCAG
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