mRNA_H-paniculata_contig34187.9130.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig34187.9130.1
Unique NamemRNA_H-paniculata_contig34187.9130.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig34187.9130.1 vs. uniprot
Match: D7G8B5_ECTSI (Mitochondrial carrier protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8B5_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 3.940e-24
Identity = 54/69 (78.26%), Postives = 61/69 (88.41%), Query Frame = 3 
Query:    6 GCEHRPPPPPRN-PGTFDVMRSIIESRGPGGLFTGAFARVGKVAPACAIMMLSFEAGKRYFSRRNYEAA 209
            GCEHRPPPPPR  PGTFDVMR+I++S+GP GLFTGA ARVGKVAPACAIMM+S+EAGKR+F  RN  AA
Sbjct:  369 GCEHRPPPPPRREPGTFDVMRNIVKSKGPAGLFTGALARVGKVAPACAIMMISYEAGKRFFGERNAAAA 437
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BLAST of mRNA_H-paniculata_contig34187.9130.1 vs. uniprot
Match: A0A6S7HZD1_PARCT (Solute carrier family 25 member 40-like (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HZD1_PARCT)

HSP 1 Score: 62.0 bits (149), Expect = 1.710e-8
Identity = 30/58 (51.72%), Postives = 41/58 (70.69%), Query Frame = 3 
Query:   42 PGTFDVMRSIIESRGPGGLFTGAFARVGKVAPACAIMMLSFEAGKRYFSRRNYEAAVA 215
            P TF ++  + + +G G LFTG  ARV K+APACAIM+ S+E GK +F +RN EA V+
Sbjct:   32 PSTFSLLMKLQKEQGTGALFTGITARVAKIAPACAIMITSYEYGKAFFRQRN-EAVVS 88
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BLAST of mRNA_H-paniculata_contig34187.9130.1 vs. uniprot
Match: A0A8J2LNR6_9HEXA (Hypothetical protein n=1 Tax=Allacma fusca TaxID=39272 RepID=A0A8J2LNR6_9HEXA)

HSP 1 Score: 64.3 bits (155), Expect = 1.610e-7
Identity = 34/66 (51.52%), Postives = 44/66 (66.67%), Query Frame = 3 
Query:   33 PRNPGTFDVMRSIIESRGPGGLFTGAFARVGKVAPACAIMMLSFEAGKRYFSRRN---YEAAVAAG 221
            P+   T+ V+R I+ S+G  GLFTG   RV KVAPACAIM+ S+E GK YF  RN   YE ++ +G
Sbjct:  313 PKLSSTYQVIRRIVTSQGVKGLFTGIVPRVVKVAPACAIMISSYEFGKTYFVNRNKEQYEKSLLSG 378
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BLAST of mRNA_H-paniculata_contig34187.9130.1 vs. uniprot
Match: UPI0015AA8CD4 (solute carrier family 25 member 40 isoform X1 n=2 Tax=Anguilla anguilla TaxID=7936 RepID=UPI0015AA8CD4)

HSP 1 Score: 63.9 bits (154), Expect = 2.090e-7
Identity = 29/57 (50.88%), Postives = 39/57 (68.42%), Query Frame = 3 
Query:   39 NPGTFDVMRSIIESRGPGGLFTGAFARVGKVAPACAIMMLSFEAGKRYFSRRNYEAA 209
            +P T  VMR I+   GP GLF G   R+ KVAPACAIM+ ++E GK +F +RN++ A
Sbjct:  313 SPSTLSVMRRIVAENGPTGLFAGFLPRLIKVAPACAIMISTYELGKAFFRKRNHDRA 369
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BLAST of mRNA_H-paniculata_contig34187.9130.1 vs. uniprot
Match: A0A024URL9_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024URL9_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 2.540e-7
Identity = 32/69 (46.38%), Postives = 47/69 (68.12%), Query Frame = 3 
Query:   30 PPRNPGTFDVMRSIIESRGPGGLFTGAFARVGKVAPACAIMMLSFEAGKRYFSRRNYEAAVAAGTIVPR 236
            P + P  + +MR I++S G GGLFTG  ARV KVAPACA+M+ ++EAGK+Y +  ++      G ++PR
Sbjct:  311 PTKPPKVWRLMREIVQSEGVGGLFTGLSARVAKVAPACAVMISTYEAGKQYMNVDHF------GFVLPR 373
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BLAST of mRNA_H-paniculata_contig34187.9130.1 vs. uniprot
Match: UPI00106BBCA4 (solute carrier family 25 member 40-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106BBCA4)

HSP 1 Score: 63.2 bits (152), Expect = 2.860e-7
Identity = 32/60 (53.33%), Postives = 41/60 (68.33%), Query Frame = 3 
Query:   36 RNPGTFDVMRSIIESRGPGGLFTGAFARVGKVAPACAIMMLSFEAGKRYFSRRNYEAAVA 215
            R P TF ++  + + +G G LFTG  ARV KVAPACAIM+ S+E GK +F +RN E A A
Sbjct:  264 RYPSTFSLLLKLRKEQGTGALFTGITARVAKVAPACAIMITSYEYGKAFFRKRN-EVATA 322
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BLAST of mRNA_H-paniculata_contig34187.9130.1 vs. uniprot
Match: A0A0A9VX11_LYGHE (Solute carrier family 25 member 40 n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9VX11_LYGHE)

HSP 1 Score: 61.2 bits (147), Expect = 3.890e-7
Identity = 30/59 (50.85%), Postives = 37/59 (62.71%), Query Frame = 3 
Query:   24 PPPPRNPGTFDVMRSIIESRGPGGLFTGAFARVGKVAPACAIMMLSFEAGKRYFSRRNY 200
            PP   N  TF  + SI +  G  GLFTG   R+ KVAPACAIM+ +FE GK +F  +NY
Sbjct:  138 PPSQANKSTFSFLYSIYQRNGVRGLFTGLVPRIVKVAPACAIMVATFEYGKAFFQHQNY 196
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BLAST of mRNA_H-paniculata_contig34187.9130.1 vs. uniprot
Match: A0A2R7W8X2_ONCFA (Uncharacterized protein n=1 Tax=Oncopeltus fasciatus TaxID=7536 RepID=A0A2R7W8X2_ONCFA)

HSP 1 Score: 57.8 bits (138), Expect = 4.100e-7
Identity = 30/66 (45.45%), Postives = 42/66 (63.64%), Query Frame = 3 
Query:   24 PPPPRNPGTFDVMRSIIESRGPGGLFTGAFARVGKVAPACAIMMLSFEAGKRYFSRRN---YEAAV 212
            PP  +N  T+ V+ +I +  G  GLF G   R+ KVAPACAIM+ +FE GK +F +RN   YE+ +
Sbjct:    3 PPSFQNKTTYSVLVNIYQQNGCSGLFAGLIPRIIKVAPACAIMVSTFEYGKAFFQKRNLLEYESKI 68
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BLAST of mRNA_H-paniculata_contig34187.9130.1 vs. uniprot
Match: A0A3R6ZB96_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6ZB96_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 4.190e-7
Identity = 28/53 (52.83%), Postives = 40/53 (75.47%), Query Frame = 3 
Query:   30 PPRNPGTFDVMRSIIESRGPGGLFTGAFARVGKVAPACAIMMLSFEAGKRYFS 188
            P + P  + ++R I++S G GGLFTG  ARV KVAPACA+M+ ++EAGK+Y +
Sbjct:  245 PTKPPKVWRLLREIVQSEGVGGLFTGLSARVAKVAPACAVMISTYEAGKQYMN 297
[Close]
BLAST of mRNA_H-paniculata_contig34187.9130.1 vs. uniprot
Match: B0X0Z5_CULQU (Solute carrier family 25 member 39 n=6 Tax=Culex TaxID=53527 RepID=B0X0Z5_CULQU)

HSP 1 Score: 62.8 bits (151), Expect = 5.090e-7
Identity = 32/60 (53.33%), Postives = 39/60 (65.00%), Query Frame = 3 
Query:   18 RPPPPPRNPGTFDVMRSIIESRGPGGLFTGAFARVGKVAPACAIMMLSFEAGKRYFSRRN 197
            R  PP ++ GTF+ MR+I   RG  GLF G   R+ KVAPACAIM+ SFE GK +F   N
Sbjct:  292 RKAPPTKSAGTFETMRNIYVRRGIKGLFAGLTPRLAKVAPACAIMIASFEYGKNFFYNYN 351
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34187.9130.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8B5_ECTSI3.940e-2478.26Mitochondrial carrier protein n=2 Tax=Ectocarpus T... [more]
A0A6S7HZD1_PARCT1.710e-851.72Solute carrier family 25 member 40-like (Fragment)... [more]
A0A8J2LNR6_9HEXA1.610e-751.52Hypothetical protein n=1 Tax=Allacma fusca TaxID=3... [more]
UPI0015AA8CD42.090e-750.88solute carrier family 25 member 40 isoform X1 n=2 ... [more]
A0A024URL9_9STRA2.540e-746.38Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
UPI00106BBCA42.860e-753.33solute carrier family 25 member 40-like n=1 Tax=De... [more]
A0A0A9VX11_LYGHE3.890e-750.85Solute carrier family 25 member 40 n=1 Tax=Lygus h... [more]
A0A2R7W8X2_ONCFA4.100e-745.45Uncharacterized protein n=1 Tax=Oncopeltus fasciat... [more]
A0A3R6ZB96_9STRA4.190e-752.83Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
B0X0Z5_CULQU5.090e-753.33Solute carrier family 25 member 39 n=6 Tax=Culex T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig34187contigH-paniculata_contig34187:151..1524 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.0
Seed ortholog evalue1e-13
Seed eggNOG ortholog2880.D7G8B5
Preferred nameMTM1
KEGG koko:K11982,ko:K15119
KEGG TC2.A.29
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000041,GO:0003674,GO:0005215,GO:0005384,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006810,GO:0006811,GO:0006812,GO:0006820,GO:0006828,GO:0006839,GO:0006950,GO:0008144,GO:0008150,GO:0008324,GO:0009635,GO:0009636,GO:0010033,GO:0015075,GO:0015318,GO:0015711,GO:0015748,GO:0015850,GO:0015893,GO:0016020,GO:0016021,GO:0016530,GO:0019842,GO:0019866,GO:0022857,GO:0022890,GO:0030001,GO:0030170,GO:0031090,GO:0031224,GO:0031919,GO:0031921,GO:0031966,GO:0031967,GO:0031975,GO:0034220,GO:0036094,GO:0042221,GO:0042493,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046873,GO:0046915,GO:0048037,GO:0050662,GO:0050896,GO:0051179,GO:0051180,GO:0051181,GO:0051182,GO:0051234,GO:0055085,GO:0070279,GO:0071421,GO:0071702,GO:0071705,GO:0097159,GO:0098655,GO:0098660,GO:0098662,GO:0140104,GO:1901363,GO:1901562,GO:1990540,GO:1990542
EggNOG free text desc.mitochondrial transport
EggNOG OGsKOG0761@1,KOG0761@2759
EC2.3.2.27
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko02000,ko04121,ko04131
Exons1
Model size1374
Cds size180
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig34187.9130.1prot_H-paniculata_contig34187.9130.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig34187 210..389 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930055.336661-UTR-H-paniculata_contig34187:150..2091622930055.336661-UTR-H-paniculata_contig34187:150..209Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig34187 151..209 +
1691481128.2924175-UTR-H-paniculata_contig34187:150..2091691481128.2924175-UTR-H-paniculata_contig34187:150..209Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig34187 151..209 +
1622930055.3756769-UTR-H-paniculata_contig34187:389..15241622930055.3756769-UTR-H-paniculata_contig34187:389..1524Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig34187 390..1524 +
1691481128.3118813-UTR-H-paniculata_contig34187:389..15241691481128.3118813-UTR-H-paniculata_contig34187:389..1524Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig34187 390..1524 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930055.3555837-CDS-H-paniculata_contig34187:209..3891622930055.3555837-CDS-H-paniculata_contig34187:209..389Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34187 210..389 +
1691481128.3031237-CDS-H-paniculata_contig34187:209..3891691481128.3031237-CDS-H-paniculata_contig34187:209..389Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34187 210..389 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig34187.9130.1

>prot_H-paniculata_contig34187.9130.1 ID=prot_H-paniculata_contig34187.9130.1|Name=mRNA_H-paniculata_contig34187.9130.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=60bp
MRSIIESRGPGGLFTGAFARVGKVAPACAIMMLSFEAGKRYFSRRNYEAA
VAAGTIVPR*
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mRNA from alignment at H-paniculata_contig34187:151..1524+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig34187.9130.1 ID=mRNA_H-paniculata_contig34187.9130.1|Name=mRNA_H-paniculata_contig34187.9130.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1374bp|location=Sequence derived from alignment at H-paniculata_contig34187:151..1524+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGGAGGGTGCGAGCACAGACCACCACCTCCTCCTCGAAATCCGGGAACT
TTTGATGTGATGCGGAGCATAATTGAGAGCCGAGGTCCCGGCGGCCTGTT
CACGGGGGCCTTTGCACGCGTGGGGAAAGTAGCACCGGCGTGCGCCATCA
TGATGTTAAGCTTTGAGGCCGGCAAGCGCTACTTCAGCCGAAGAAACTAC
GAGGCAGCTGTAGCGGCTGGTACAATTGTCCCTAGATAGCGCTTTTTAAA
TGTGTTCTCGGCCTCGTAAACAATAAATAATGCACAAATAAATCCTGTAG
TTTTGTGTTCGTGTCTTTCGCACTTCCATTCACTATAGCAAGCCAGTGGT
GGTGGTGGGCGTCGTTGTTCTAATTTCGGAGTAGTTTTGCATTTAATTGT
ATTTTTCAAATGCGAGCGTAAGGCAGCGAGCCACTGCCAGCGTATAGTGA
GTCCAGGAGTCGAGTATATATTGCACGAGCTGCACGGACGTATACGGCTA
GCTGTGGCTCCACTGCTGCCGTGTGTGTCATGTATTACTTTGGTCTGATG
GTGTTAGTCTTGGAGCAACAGCGGAGATATGTGCCGTTGCCAATTGTGCT
GGTGGCATAGCAAGTAGAGGCGATTGATTTCGAGGGTGGTGGGTGTGTGC
TTGTTAAAATGTCTCAGCTGGTTTTCTCAAGTGCTGTTGGTTGATCGTGG
TGGTGTTTCAGGGTCAATCACCCCCCTTTTTTTGTTATCGTGTATCGAGC
CTGAAAGTTTTGATAGGCAGGCTGAGGCATGCACGTTGTCGACCACCCTC
CGTCGATGGGAGAGTTTTGAGAAATCTGTTTTTTGGTATTTTCACACCTT
GCAGCCGAGCTGTTTGCCGCGACCGCCGGCCGCCCAGACTAATACTGCTT
TGGCTTTTATATTGTTTTTTCTATGAGTCAACGTTTCGAGGTGCTATACT
ACTGCTGTTGAGGGAGGCCTAAATAGTACACAGTTGATGTGTTGAAAGTT
ATTCGCCCCGTCTCTGGGAGTGTTTTTCAAAGAGTTTTAAAAGGAAAAAA
TACCTATGGTGCATTTTGCTTTTCAAGCACGCTGGTTTTTCCACCTGTAG
CGGTAGCGCGGTAGCAGTAATGTAATCTGATGGCAGCGTCGATAGATGAA
GTTATACAATTTCGAGTTTTTGGCCTCCTGCACACGCACGTCGCATAGAA
CAGATCCTGGTCGCTGTAGACCTCCGTGGCGAAGTCACTACGGTACAAAT
ACGGTGTTCCTGGTGTACACCAAACAGAGCGATTAGAAAGCAAAAGCTTC
CCCCTGCCGAGTAATTCAACACAACAGCACGGACACACTGTTACAATAGA
AAACATGAAGATGTTCTAGAAAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig34187:151..1524+

>mRNA_H-paniculata_contig34187.9130.1 ID=mRNA_H-paniculata_contig34187.9130.1|Name=mRNA_H-paniculata_contig34187.9130.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=360bp|location=Sequence derived from alignment at H-paniculata_contig34187:151..1524+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGGAGCATAATTGAGAGCCGAGGTCCCGGCGGCCTGTTCACGGGGGC
CTTTGCACGCGTGGGGAAAGTAGCACCGGCGTGCGCCATCATGATGTTAA
GCTTTGAGGCCGGCAAGCGCTACTTCAGCCGAAGAAACTACGAGGCAGCT
GTAGCGGCTGGTACAATTGTCCCTAGATAGATGCGGAGCATAATTGAGAG
CCGAGGTCCCGGCGGCCTGTTCACGGGGGCCTTTGCACGCGTGGGGAAAG
TAGCACCGGCGTGCGCCATCATGATGTTAAGCTTTGAGGCCGGCAAGCGC
TACTTCAGCCGAAGAAACTACGAGGCAGCTGTAGCGGCTGGTACAATTGT
CCCTAGATAG
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