mRNA_H-paniculata_contig34154.9122.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig34154.9122.1
Unique NamemRNA_H-paniculata_contig34154.9122.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig34154.9122.1 vs. uniprot
Match: A0A6H5JQJ6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JQJ6_9PHAE)

HSP 1 Score: 171 bits (432), Expect = 1.520e-50
Identity = 79/93 (84.95%), Postives = 88/93 (94.62%), Query Frame = 1 
Query:    1 LQGGDFENADGTGGSSIYGEKFEDENFILRHTGPGILSMANAGPGTNGSQFFICVAKTPWLDDKHVVFGEMLDGARTLKNLELLGSANGKVKK 279
            LQGGDF+NADGTGGSSIYG KFEDENF L+HTGPG+LSMANAGPGTNGSQFFICVAKTPWLDDKHVVFGE++DGART+K++ELLGS+ GK  K
Sbjct:  234 LQGGDFDNADGTGGSSIYGAKFEDENFNLKHTGPGVLSMANAGPGTNGSQFFICVAKTPWLDDKHVVFGEVIDGARTVKDIELLGSSGGKPSK 326
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BLAST of mRNA_H-paniculata_contig34154.9122.1 vs. uniprot
Match: UPI0009435107 (peptidyl-prolyl cis-trans isomerase A n=1 Tax=Rhinolophus sinicus TaxID=89399 RepID=UPI0009435107)

HSP 1 Score: 142 bits (359), Expect = 2.230e-42
Identity = 66/94 (70.21%), Postives = 76/94 (80.85%), Query Frame = 1 
Query:    1 LQGGDFENADGTGGSSIYGEKFEDENFILRHTGPGILSMANAGPGTNGSQFFICVAKTPWLDDKHVVFGEMLDGARTLKNLELLGSANGKVKKK 282
             QGGDF   +GTGG SIYGEKF+DENF+L+HTGPGILSMANAGP TNGSQFFIC AKT WLD KHVVFG++ DG + ++ +E  GS NGK  KK
Sbjct:    2 CQGGDFTRHNGTGGKSIYGEKFDDENFVLKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKDGMKIVEAMERFGSRNGKTSKK 95
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BLAST of mRNA_H-paniculata_contig34154.9122.1 vs. uniprot
Match: A0A7J8HCZ4_MOLMO (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Molossus molossus TaxID=27622 RepID=A0A7J8HCZ4_MOLMO)

HSP 1 Score: 143 bits (360), Expect = 2.640e-42
Identity = 68/94 (72.34%), Postives = 74/94 (78.72%), Query Frame = 1 
Query:    1 LQGGDFENADGTGGSSIYGEKFEDENFILRHTGPGILSMANAGPGTNGSQFFICVAKTPWLDDKHVVFGEMLDGARTLKNLELLGSANGKVKKK 282
             QGGDF   +GTGG SIYGEKFEDENFIL+HTGPGILSMANAGP TNGSQFFIC AKT WLD KHVVFG++ DG   +  +E  GS NGK  KK
Sbjct:   18 CQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGQVKDGMDIVTTMESFGSRNGKTSKK 111
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BLAST of mRNA_H-paniculata_contig34154.9122.1 vs. uniprot
Match: G7PEC9_MACFA (Peptidyl-prolyl cis-trans isomerase n=3 Tax=cellular organisms TaxID=131567 RepID=G7PEC9_MACFA)

HSP 1 Score: 142 bits (358), Expect = 3.270e-42
Identity = 67/94 (71.28%), Postives = 75/94 (79.79%), Query Frame = 1 
Query:    1 LQGGDFENADGTGGSSIYGEKFEDENFILRHTGPGILSMANAGPGTNGSQFFICVAKTPWLDDKHVVFGEMLDGARTLKNLELLGSANGKVKKK 282
             QGGDF   +GTGG SIYGEKFEDENFIL+HTGPGILSMANAGP TNGSQFFIC AKT WLD KHVVFG++ +G   ++ +E  GS NGK  KK
Sbjct:    2 CQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIMEAMERFGSRNGKTSKK 95
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BLAST of mRNA_H-paniculata_contig34154.9122.1 vs. uniprot
Match: A0A8D2JWE6_THEGE (Peptidyl-prolyl cis-trans isomerase n=3 Tax=Boreoeutheria TaxID=1437010 RepID=A0A8D2JWE6_THEGE)

HSP 1 Score: 142 bits (357), Expect = 4.640e-42
Identity = 67/94 (71.28%), Postives = 75/94 (79.79%), Query Frame = 1 
Query:    1 LQGGDFENADGTGGSSIYGEKFEDENFILRHTGPGILSMANAGPGTNGSQFFICVAKTPWLDDKHVVFGEMLDGARTLKNLELLGSANGKVKKK 282
             QGGDF   +GTGG SIYGEKFEDENFIL+HTGPGILSMANAGP TNGSQFFIC AKT WLD KHVVFG++ +G   ++ +E  GS NGK  KK
Sbjct:    2 CQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKK 95
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BLAST of mRNA_H-paniculata_contig34154.9122.1 vs. uniprot
Match: A0A1U7SS44_ALLSI (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Alligator sinensis TaxID=38654 RepID=A0A1U7SS44_ALLSI)

HSP 1 Score: 142 bits (357), Expect = 4.640e-42
Identity = 67/94 (71.28%), Postives = 74/94 (78.72%), Query Frame = 1 
Query:    1 LQGGDFENADGTGGSSIYGEKFEDENFILRHTGPGILSMANAGPGTNGSQFFICVAKTPWLDDKHVVFGEMLDGARTLKNLELLGSANGKVKKK 282
             QGGDF   +GTGG SIYGEKFEDENF+L+HTGPGILSMANAGP TNGSQFFIC AKT WLD KHVVFG + DG   ++ +E  GS NGK  KK
Sbjct:    2 CQGGDFTRHNGTGGKSIYGEKFEDENFVLKHTGPGILSMANAGPNTNGSQFFICTAKTDWLDGKHVVFGRVKDGMPLVEKIEKYGSKNGKTAKK 95
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BLAST of mRNA_H-paniculata_contig34154.9122.1 vs. uniprot
Match: A0A8C2V1S1_CHILA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Chinchilla lanigera TaxID=34839 RepID=A0A8C2V1S1_CHILA)

HSP 1 Score: 143 bits (360), Expect = 6.810e-42
Identity = 67/94 (71.28%), Postives = 76/94 (80.85%), Query Frame = 1 
Query:    1 LQGGDFENADGTGGSSIYGEKFEDENFILRHTGPGILSMANAGPGTNGSQFFICVAKTPWLDDKHVVFGEMLDGARTLKNLELLGSANGKVKKK 282
             QGGDF   +GTGG SIYGEKF+DENFIL+HTGPGILSMANAGP TNGSQFFIC AKT WLD KHVVFG++ +G  T++ +E  GS NGK  KK
Sbjct:   50 CQGGDFTRHNGTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNTVEAMERFGSRNGKTSKK 143
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BLAST of mRNA_H-paniculata_contig34154.9122.1 vs. uniprot
Match: A0A671FVS7_RHIFE (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Rhinolophus ferrumequinum TaxID=59479 RepID=A0A671FVS7_RHIFE)

HSP 1 Score: 143 bits (360), Expect = 7.020e-42
Identity = 67/94 (71.28%), Postives = 76/94 (80.85%), Query Frame = 1 
Query:    1 LQGGDFENADGTGGSSIYGEKFEDENFILRHTGPGILSMANAGPGTNGSQFFICVAKTPWLDDKHVVFGEMLDGARTLKNLELLGSANGKVKKK 282
             QGGDF   +GTGG SIYGEKF+DENFIL+HTGPGILSMANAGP TNGSQFFIC AKT WLD KHVVFG++ DG + ++ +E  GS NGK  KK
Sbjct:   51 CQGGDFTRHNGTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKDGMKIVEAMERFGSRNGKTSKK 144
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BLAST of mRNA_H-paniculata_contig34154.9122.1 vs. uniprot
Match: A0A372QQP5_9GLOM (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Rhizophagus sp. MUCL 43196 TaxID=1803374 RepID=A0A372QQP5_9GLOM)

HSP 1 Score: 143 bits (361), Expect = 9.020e-42
Identity = 65/91 (71.43%), Postives = 74/91 (81.32%), Query Frame = 1 
Query:    1 LQGGDFENADGTGGSSIYGEKFEDENFILRHTGPGILSMANAGPGTNGSQFFICVAKTPWLDDKHVVFGEMLDGARTLKNLELLGSANGKV 273
            +QGGDF   DGTGG SIYGEKF DENF L+HTGPGILSMANAGP TNGSQFFIC  KTPWLD KHVVFG ++ G  T++ +E LGS++GK 
Sbjct:   65 IQGGDFTKGDGTGGKSIYGEKFADENFTLKHTGPGILSMANAGPNTNGSQFFICTVKTPWLDGKHVVFGHVVKGMETVQEIEKLGSSSGKT 155
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BLAST of mRNA_H-paniculata_contig34154.9122.1 vs. uniprot
Match: A0A671EAZ3_RHIFE (Peptidyl-prolyl cis-trans isomerase n=7 Tax=Theria TaxID=32525 RepID=A0A671EAZ3_RHIFE)

HSP 1 Score: 143 bits (360), Expect = 9.780e-42
Identity = 67/94 (71.28%), Postives = 76/94 (80.85%), Query Frame = 1 
Query:    1 LQGGDFENADGTGGSSIYGEKFEDENFILRHTGPGILSMANAGPGTNGSQFFICVAKTPWLDDKHVVFGEMLDGARTLKNLELLGSANGKVKKK 282
             QGGDF   +GTGG SIYGEKF+DENFIL+HTGPGILSMANAGP TNGSQFFIC AKT WLD KHVVFG++ DG + ++ +E  GS NGK  KK
Sbjct:   62 CQGGDFTRHNGTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKDGMKIVEAMERFGSRNGKTSKK 155
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34154.9122.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JQJ6_9PHAE1.520e-5084.95Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
UPI00094351072.230e-4270.21peptidyl-prolyl cis-trans isomerase A n=1 Tax=Rhin... [more]
A0A7J8HCZ4_MOLMO2.640e-4272.34Peptidyl-prolyl cis-trans isomerase n=1 Tax=Moloss... [more]
G7PEC9_MACFA3.270e-4271.28Peptidyl-prolyl cis-trans isomerase n=3 Tax=cellul... [more]
A0A8D2JWE6_THEGE4.640e-4271.28Peptidyl-prolyl cis-trans isomerase n=3 Tax=Boreoe... [more]
A0A1U7SS44_ALLSI4.640e-4271.28Peptidyl-prolyl cis-trans isomerase n=1 Tax=Alliga... [more]
A0A8C2V1S1_CHILA6.810e-4271.28Peptidyl-prolyl cis-trans isomerase n=1 Tax=Chinch... [more]
A0A671FVS7_RHIFE7.020e-4271.28Peptidyl-prolyl cis-trans isomerase n=1 Tax=Rhinol... [more]
A0A372QQP5_9GLOM9.020e-4271.43Peptidyl-prolyl cis-trans isomerase n=1 Tax=Rhizop... [more]
A0A671EAZ3_RHIFE9.780e-4271.28Peptidyl-prolyl cis-trans isomerase n=7 Tax=Theria... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig34154contigH-paniculata_contig34154:779..1711 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score171.8
Seed ortholog evalue1.5e-40
Seed eggNOG ortholog2880.D8LHP1
Preferred namePPIE
KEGG koko:K01802,ko:K09564
KEGG Pathwayko03040,map03040
KEGG ModuleM00355
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000398,GO:0000413,GO:0000737,GO:0000974,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003729,GO:0003755,GO:0003824,GO:0004518,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006308,GO:0006309,GO:0006355,GO:0006396,GO:0006397,GO:0006464,GO:0006725,GO:0006807,GO:0006810,GO:0006887,GO:0006915,GO:0006921,GO:0006950,GO:0006955,GO:0006974,GO:0008143,GO:0008144,GO:0008150,GO:0008152,GO:0008219,GO:0008380,GO:0009056,GO:0009057,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0012501,GO:0012505,GO:0016018,GO:0016043,GO:0016070,GO:0016071,GO:0016192,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019219,GO:0019222,GO:0019439,GO:0019538,GO:0022411,GO:0030141,GO:0030262,GO:0031323,GO:0031326,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0031983,GO:0032940,GO:0032991,GO:0033218,GO:0033554,GO:0034641,GO:0034655,GO:0034774,GO:0036211,GO:0036230,GO:0042119,GO:0042277,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0043412,GO:0043900,GO:0043902,GO:0043903,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044433,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045055,GO:0045069,GO:0045070,GO:0045321,GO:0046483,GO:0046700,GO:0046903,GO:0048518,GO:0048524,GO:0050789,GO:0050792,GO:0050794,GO:0050896,GO:0051171,GO:0051179,GO:0051234,GO:0051252,GO:0051716,GO:0060205,GO:0060255,GO:0065007,GO:0070013,GO:0070717,GO:0071007,GO:0071013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0097159,GO:0097194,GO:0097708,GO:0099503,GO:0101002,GO:0140096,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901575,GO:1902494,GO:1903506,GO:1903900,GO:1903902,GO:1904813,GO:1990904,GO:2000112,GO:2001141
EggNOG free text desc.peptidyl-prolyl cis-trans isomerase activity
EggNOG OGsCOG0652@1,KOG0111@2759
EC5.2.1.8
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03041,ko03110
Exons2
Model size282
Cds size282
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930054.0330875-CDS-H-paniculata_contig34154:778..9491622930054.0330875-CDS-H-paniculata_contig34154:778..949Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34154 779..949 +
1691481127.822248-CDS-H-paniculata_contig34154:778..9491691481127.822248-CDS-H-paniculata_contig34154:778..949Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34154 779..949 +
1622930054.0484633-CDS-H-paniculata_contig34154:1600..17111622930054.0484633-CDS-H-paniculata_contig34154:1600..1711Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34154 1601..1711 +
1691481127.8346794-CDS-H-paniculata_contig34154:1600..17111691481127.8346794-CDS-H-paniculata_contig34154:1600..1711Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34154 1601..1711 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig34154.9122.1prot_H-paniculata_contig34154.9122.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig34154 779..1711 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig34154.9122.1

>prot_H-paniculata_contig34154.9122.1 ID=prot_H-paniculata_contig34154.9122.1|Name=mRNA_H-paniculata_contig34154.9122.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=94bp
LQGGDFENADGTGGSSIYGEKFEDENFILRHTGPGILSMANAGPGTNGSQ
FFICVAKTPWLDDKHVVFGEMLDGARTLKNLELLGSANGKVKKK
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mRNA from alignment at H-paniculata_contig34154:779..1711+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig34154.9122.1 ID=mRNA_H-paniculata_contig34154.9122.1|Name=mRNA_H-paniculata_contig34154.9122.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=933bp|location=Sequence derived from alignment at H-paniculata_contig34154:779..1711+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTACAGGGGGGTGACTTCGAGAACGCGGATGGCACCGGAGGATCTTCAAT
CTACGGGGAAAAGTTCGAGGACGAGAATTTCATCCTCAGGCACACGGGGC
CGGGGATTCTTAGCATGGCCAACGCTGGACCGGGGACTAACGGGAGCCAG
TTCTTTATCTGCGTTGCCAAGGTGTTTAGTTGGCTGTAATTAATATGTTT
TTTTTATGTTTGTTCTGGGCCATGAATGAAGGTAGTTATGTTGTAGGTAT
GTTTGGTGGATCCAATGTCACTCTCCACGGAGTGTTGGTTGATATCTACG
GAAAGCTAAAGCAGTAATGGTAATACCGGCGGGTGCGGTGACCACCCATG
GGTTTAAAAAAATAGAGAAAAATGACTAGGCTGCTTCCACCTCCCCCCCC
CCCCCACCCCCCCCCCGCCTCCGCCCCCGCCCCTGCCGCGGACAGATACA
TACGTATTTGGAGCATTGACGTTTTTTTTTTGTTCTGAATTTCTTGAGCA
TGTGCGGTACACGCACGAAATAAAGTGAAGACTCTCTGTTTCTTGACATT
ACTATCATTTGGAGCACTTGTAGATGGCCCAGGGCGCATTGAATAAACGC
GGCCCCTCACTCATCCGGAACCTTGCAGGCGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGCTTGTCGCGTGGTTCATGTGTACATTCATATTCATAT
TCATCCGGGAGGTGAAAAAGAGGTGAAAGTACGACGTATTTTTGATGTCA
TGATCCATCCATGTCTTGCATCATTTTTTTTTTCACACATCTGTCTGTCT
GTGTGCCTACTGTTGTTTACAGACGCCGTGGCTTGATGACAAGCACGTAG
TTTTCGGAGAGATGCTGGACGGGGCGAGGACCCTGAAGAACCTGGAGCTC
CTTGGATCCGCTAACGGAAAGGTTAAGAAGAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig34154:779..1711+

>mRNA_H-paniculata_contig34154.9122.1 ID=mRNA_H-paniculata_contig34154.9122.1|Name=mRNA_H-paniculata_contig34154.9122.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=564bp|location=Sequence derived from alignment at H-paniculata_contig34154:779..1711+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTACAGGGGGGTGACTTCGAGAACGCGGATGGCACCGGAGGATCTTCAAT
CTACGGGGAAAAGTTCGAGGACGAGAATTTCATCCTCAGGCACACGGGGC
CGGGGATTCTTAGCATGGCCAACGCTGGACCGGGGACTAACGGGAGCCAG
TTCTTTATCTGCGTTGCCAAGTTACAGGGGGGTGACTTCGAGAACGCGGA
TGGCACCGGAGGATCTTCAATCTACGGGGAAAAGTTCGAGGACGAGAATT
TCATCCTCAGGCACACGGGGCCGGGGATTCTTAGCATGGCCAACGCTGGA
CCGGGGACTAACGGGAGCCAGTTCTTTATCTGCGTTGCCAAGACGCCGTG
GCTTGATGACAAGCACGTAGTTTTCGGAGAGATGCTGGACGGGGCGAGGA
CCCTGAAGAACCTGGAGCTCCTTGGATCCGCTAACGGAAAGGTTAAGAAG
AAGACGCCGTGGCTTGATGACAAGCACGTAGTTTTCGGAGAGATGCTGGA
CGGGGCGAGGACCCTGAAGAACCTGGAGCTCCTTGGATCCGCTAACGGAA
AGGTTAAGAAGAAG
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