mRNA_H-paniculata_contig34123.9116.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig34123.9116.1 vs. uniprot
Match: A0A6H5L5H7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5H7_9PHAE) HSP 1 Score: 298 bits (763), Expect = 3.230e-87 Identity = 174/457 (38.07%), Postives = 252/457 (55.14%), Query Frame = 1
Query: 1 MKLGTLNINGVKGKLTQLQRLLEREDLACCALQETLLRPTDWRLKVPGYQSFSACGGNVASTRGVSLLVKKQFSAYTVGKGSAWHLLVRCFGSGLTQPWIVGTVYIPHRGTGDKPVGAILKDIAEVRRKYPNDSIAIMGDWNQTKNRVNKALAKKVDPELQINE--PRNAEFGTRNK-TNRCIDHIATLCNSTCETGRAA-ILRRVDLSDHFPVVCM-------VGCSNEVAPPLDLKTQSTRPRIDVRKLPRPETKKYCGKGPEGRTNHFNVIGSNYWAPLVDLLETQEDGWDKSEIQAKADASAEKLVSTCHTLANDYNLV-NPGTGGNQKLKSHIAKAIDQKEKTYERAMRTKLGSEKSQRRWKRYHQLRRKVKQLVKQDAKHRWARTLVKVSNQMVDDPREFWKWSSNLAGWRQATASYGVQPMCHPDSGELLTSVPHIRDAWAVHYGRLATD 1335
+K+ TLNINGVK K QLQR+L + C ALQET L TDW L VPGY++F+ G +STRG ++L++ + A TVGK S WH VRC+ G G P+ + + ++R KYPNDSI +MGD+N+ + RV + + +++ E ++A+ GTR+ + R IDHI T +T RA +LR+VD+SDH+PVV + V P++ +T RI+ +P P T Y GP GR NH VI +NYW PL DL+E + + A DA+A ++V H +A + + T LK IA+AID + + Y A R + S +++ W+RYH+ R K ++LV++D + W + L S Q+ DP+ W + S +AGW++ +S G+QP+ HPDS LLTS I AW HY RLA D
Sbjct: 33 LKVATLNINGVKSKKIQLQRVLAMYRINCIALQETTLTVTDWALNVPGYRTFAVYGERTSSTRGAAILLRNKMGAQTVGKSSPWHTFVRCY------------------GLGKVPLRTVRNQMRDLRVKYPNDSIILMGDFNRLRPRVEQWFNCAYES-IRVWELTGKDADLGTRDHGSKRVIDHIMTSLAHPQDTLRAPRVLRKVDISDHYPVVSTFRSDRADASTGDSVGVPINARTIQRGERINTGLIPMPGTHWYQESGPRGRANHQKVIHANYWEPLADLIEEGNEELSPEDTTALVDAAASRMVEASHQVARECGQTKDSSTQRAPALKPQIARAIDDRGRLYRAAKRLRKNSPRAKVAWERYHEARMKAERLVRKDRRRAWTKALCTASEQLRSDPKAAWHFMSAVAGWKRKDSSGGLQPVQHPDSRALLTSANDISAAWRTHYQRLAAD 470
BLAST of mRNA_H-paniculata_contig34123.9116.1 vs. uniprot
Match: A0A7S1SJ55_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SJ55_9CHLO) HSP 1 Score: 81.3 bits (199), Expect = 1.290e-12 Identity = 97/363 (26.72%), Postives = 153/363 (42.15%), Query Frame = 1
Query: 307 TVYIPHRGTGDKPVGAILKDIAEVRRKYPNDSIAIMGDWNQTKNRVNKALAK-KVDPELQINEPRNAEFGTRNKTNR----CIDHIAT----LCNSTCETGRAAILRRVDLSDHFPVVC----MVGCSNEVA-PPLDLKTQSTRPRIDVRKLPRPETKKYCGKGP-EGRTNHFNVIGSNYWAPLVDLLETQEDGWDKSE---IQAKADASAEKLVSTCHTLANDYNLVNPGTGGNQKLKSHIAKAIDQKEKTYERAMRTKLGSEKSQRRWKRYHQLRRKVKQLVKQDAKHRWARTLVKVSNQMVDDP--REFWKWSSNLAGWRQATASYGVQPMCHPDSGELLTSVPHIRDAWAVHYGRLATD 1335
+VY+P G+ + +++A++R K+P D+I + GDWN + +++ L + + P+ + PR+A R R IDH + S + D SDHFPV +VG S E PPL L+ R+ VR +P+P G P E T + + +N +A L + +G E I A AD + + ST + G L+ I AI ++ + + G +S RY R +VK +V+ + + + AR + K N R FWKW+ ++A ++ QP+ P SG L T I WA HY L D
Sbjct: 13 SVYLPTGSQGEPYRCRLREELAQLREKFPRDTIVVGGDWNLDEAQLDALLRRWRCVPDAKTIWPRDASARVRGTCRRGSCRVIDHFVAWPPVMGPSLSFPHSVFVDYSWDTSDHFPVFASVPRLVGDSFEHPHPPLMLE------RLSVRSIPKPAR----GDPPSEWPTPFRDFVTANPFAILAPPNDEPMEGAMSREPDSIDADADGFVQAVWSTARRVGAVSRTRRKSLG--PPLQRSILGAIARRRHAFLALCQEARGPIQSVA-LDRYIAARLRVKNMVRTNRRRQKARAIDKAINDFRQGGGRRGFWKWARSIAKGHPTQSNRAEQPVHDPTSGVLHTEPGEINACWARHYRELLRD 362
BLAST of mRNA_H-paniculata_contig34123.9116.1 vs. uniprot
Match: F8P613_SERL9 (Endo/exonuclease/phosphatase domain-containing protein n=2 Tax=Serpula lacrymans var. lacrymans TaxID=341189 RepID=F8P613_SERL9) HSP 1 Score: 67.0 bits (162), Expect = 3.550e-8 Identity = 62/230 (26.96%), Postives = 103/230 (44.78%), Query Frame = 1
Query: 13 TLNINGVKGKLTQLQRLLEREDLACCALQETLLRPTDWRLKVPGYQSFSACGGNVASTRGVSLLVKKQFSAYTVGKG-----SAWHLLVRCFGSGLT---QPWIVGTVYIPHRGTGDKPVGAILKDIAE----VRRKYPNDSIAIMGDWNQTKNRVNKALAKKVDPELQ---INEP--RNAEFGTRNKTNRCIDHIATLCNSTCETGRAAILRRVDLSDHFPVVCMVGCS 651
TLNING + K +Q +L+ +A CALQETL+ PT + L++ GY SF + V RG +LL+ AY + + S ++ SGL +P Y+P G L+ I + + K P + +GD N +++ L +K + ++ + P R +GT + IDHI + + ++R +SDH P++ + S
Sbjct: 210 TLNINGFQKKKELVQDVLQTNRIAVCALQETLVAPTHFPLRIDGYNSFVSPW--VEGFRGQALLIDLSLPAYEIPRAKPDTPSGGRYVIHVKVSGLRDIKRPVHFLAAYLPSGGNFRLERKFALQSIVDRFDHILEKDPGALVVCLGDLNIDHETLDRRLKRKTNNVIRLPPVGSPLSRFPIWGTA----KAIDHILASPQAYNLLRKPRVIRSDCISDHRPLISHIRSS 433 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34123.9116.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig34123.9116.1 >prot_H-paniculata_contig34123.9116.1 ID=prot_H-paniculata_contig34123.9116.1|Name=mRNA_H-paniculata_contig34123.9116.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=445bp MKLGTLNINGVKGKLTQLQRLLEREDLACCALQETLLRPTDWRLKVPGYQback to top mRNA from alignment at H-paniculata_contig34123:34..1368- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig34123.9116.1 ID=mRNA_H-paniculata_contig34123.9116.1|Name=mRNA_H-paniculata_contig34123.9116.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1335bp|location=Sequence derived from alignment at H-paniculata_contig34123:34..1368- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig34123:34..1368- >mRNA_H-paniculata_contig34123.9116.1 ID=mRNA_H-paniculata_contig34123.9116.1|Name=mRNA_H-paniculata_contig34123.9116.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2670bp|location=Sequence derived from alignment at H-paniculata_contig34123:34..1368- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |