mRNA_H-paniculata_contig3412.9115.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3412.9115.1
Unique NamemRNA_H-paniculata_contig3412.9115.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3412.9115.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3412contigH-paniculata_contig3412:517..1124 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size609
Cds size321
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930053.4694397-UTR-H-paniculata_contig3412:516..8031622930053.4694397-UTR-H-paniculata_contig3412:516..803Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3412 517..803 +
1691481127.6381445-UTR-H-paniculata_contig3412:516..8031691481127.6381445-UTR-H-paniculata_contig3412:516..803Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3412 517..803 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930053.4821427-CDS-H-paniculata_contig3412:803..11241622930053.4821427-CDS-H-paniculata_contig3412:803..1124Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3412 804..1124 +
1691481127.6481607-CDS-H-paniculata_contig3412:803..11241691481127.6481607-CDS-H-paniculata_contig3412:803..1124Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3412 804..1124 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3412.9115.1prot_H-paniculata_contig3412.9115.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3412 804..1124 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3412.9115.1

>prot_H-paniculata_contig3412.9115.1 ID=prot_H-paniculata_contig3412.9115.1|Name=mRNA_H-paniculata_contig3412.9115.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=107bp
MYVPTVLTTNSSVQCSFKFFMMMCCWLVDVISYSCSKMSSSSSVSRTAPC
SSLCHSLLCRTALLSNSCVVFRLYCIVLSPLSFIEIFYAIFQSILLSYSA
DLCHNPM
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mRNA from alignment at H-paniculata_contig3412:517..1124+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3412.9115.1 ID=mRNA_H-paniculata_contig3412.9115.1|Name=mRNA_H-paniculata_contig3412.9115.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=608bp|location=Sequence derived from alignment at H-paniculata_contig3412:517..1124+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGGCTGTTGCTCATTTGTGTCGATATTTTCGAGTTTACGTCATGCCGT
ATGAGTCCTTTGGCGCGTGACATTCTGGTTGGCCTAGAGGGCGGTATAGT
AAATATCTGTCGCGATGACTGACTGCCTGGCTAGCAGGCTGGTTGGGGAA
GTCGACTCCGAGATATCTTCTTTGTTTGCATTTCCCCGTCTCTATTCTGT
TGTTCATGATCATACTTCGGTTGGTGTCGAACAACACTGTGTCATTCTCT
GATGGATAATGTGCTTTAATTTGTTTTTGTCGTGTATATGTATGTCCCAA
CGGTTCTCACAACAAATAGCAGTGTGCAATGTTCGTTCAAGTTTTTCATG
ATGATGTGTTGTTGGTTAGTCGATGTTATTTCATATTCGTGCTCCAAAAT
GTCATCTTCTTCCAGTGTATCTCGAACGGCGCCATGCTCCAGTTTGTGCC
ACTCGTTGCTGTGTCGAACTGCGTTACTCTCCAATTCATGCGTTGTTTTT
CGACTGTACTGTATCGTACTCAGTCCGTTGTCTTTTATTGAAATATTTTA
TGCCATCTTCCAATCCATACTCTTGTCATATTCGGCTGACTTGTGCCATA
ATCCGATG
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Coding sequence (CDS) from alignment at H-paniculata_contig3412:517..1124+

>mRNA_H-paniculata_contig3412.9115.1 ID=mRNA_H-paniculata_contig3412.9115.1|Name=mRNA_H-paniculata_contig3412.9115.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at H-paniculata_contig3412:517..1124+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTATGTCCCAACGGTTCTCACAACAAATAGCAGTGTGCAATGTTCGTT
CAAGTTTTTCATGATGATGTGTTGTTGGTTAGTCGATGTTATTTCATATT
CGTGCTCCAAAATGTCATCTTCTTCCAGTGTATCTCGAACGGCGCCATGC
TCCAGTTTGTGCCACTCGTTGCTGTGTCGAACTGCGTTACTCTCCAATTC
ATGCGTTGTTTTTCGACTGTACTGTATCGTACTCAGTCCGTTGTCTTTTA
TTGAAATATTTTATGCCATCTTCCAATCCATACTCTTGTCATATTCGGCT
GACTTGTGCCATAATCCGATGATGTATGTCCCAACGGTTCTCACAACAAA
TAGCAGTGTGCAATGTTCGTTCAAGTTTTTCATGATGATGTGTTGTTGGT
TAGTCGATGTTATTTCATATTCGTGCTCCAAAATGTCATCTTCTTCCAGT
GTATCTCGAACGGCGCCATGCTCCAGTTTGTGCCACTCGTTGCTGTGTCG
AACTGCGTTACTCTCCAATTCATGCGTTGTTTTTCGACTGTACTGTATCG
TACTCAGTCCGTTGTCTTTTATTGAAATATTTTATGCCATCTTCCAATCC
ATACTCTTGTCATATTCGGCTGACTTGTGCCATAATCCGATG
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