mRNA_H-paniculata_contig3401.9089.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig3401.9089.1 vs. uniprot
Match: UPI001E1BC44C (secreted RxLR effector protein 161-like n=1 Tax=Daphnia magna TaxID=35525 RepID=UPI001E1BC44C) HSP 1 Score: 94.4 bits (233), Expect = 2.340e-21 Identity = 44/99 (44.44%), Postives = 63/99 (63.64%), Query Frame = 1
Query: 1 YAVGTIAKFCENPGMAHKKAVEKILQYVLRIADLGITYGG*NSERKMLTYADSEYAACPDSRRSVSSGTVLLLEGGAICWYSRTQEVAAAGTSEAEYVA 297
YA+ ++++CE+PG H +AV++ L Y+ D G+ YGG ++TY DS +AACPD+RRS +SGT+ + GG I W S Q+ A T EAEY A
Sbjct: 37 YAITAVSRYCEDPGKPHWEAVKRSLSYLAGTMDYGLCYGGDQLTNTLVTYTDSNFAACPDTRRS-TSGTLFMFNGGPIAWNSHLQKSVAQSTCEAEYYA 134
BLAST of mRNA_H-paniculata_contig3401.9089.1 vs. uniprot
Match: A0A0J7K651_LASNI (Gag-pol polyprotein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K651_LASNI) HSP 1 Score: 97.4 bits (241), Expect = 3.280e-21 Identity = 45/114 (39.47%), Postives = 75/114 (65.79%), Query Frame = 1
Query: 1 YAVGTIAKFCENPGMAHKKAVEKILQYVLRIADLGITY-GG*NSERKMLTYADSEYAACPDSRRSVSSGTVLLLEGGAICWYSRTQEVAAAGTSEAEYVALAEIVNEVLFPRHV 339
Y V ++KF E P AH A +++L+Y+ R ++GIT+ G + +++ ++DS+YA+CPD+R+S+SS VL+ G + W SR Q + A T++AEYVA+ E EV++ R +
Sbjct: 1103 YVVSVLSKFLERPSNAHWNAAKRVLKYLKRTLNVGITFDGNCDQSNQLVAFSDSDYASCPDTRKSISS-VVLMFNNGPVIWSSRKQSIVATSTTDAEYVAMCEAAKEVVWIRRL 1215
BLAST of mRNA_H-paniculata_contig3401.9089.1 vs. uniprot
Match: A0A6H5K2P8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2P8_9PHAE) HSP 1 Score: 91.7 bits (226), Expect = 9.310e-20 Identity = 50/113 (44.25%), Postives = 72/113 (63.72%), Query Frame = 1
Query: 4 AVGTIAKFCENPGMAHKKAVEKILQYVLRIADLGITY-GG*NSERKMLTYADSEYAACPDSRRSVSSGTVLLLEGGAICWYSRTQEVAAAGTSEAEYVALAEIVNEVLFPRHV 339
A +A++C +P M H KA IL YV R + +GIT+ GG + M + D++YA+ RRSVS G V+ + GG + W+SRTQ+ T+EAEYVA+A+++ EVLF R V
Sbjct: 128 AARAVARYCPSPKMVHWKAALGILGYVRRTSWMGITFEGGVVTGMSMQVFVDADYASKAADRRSVSGGLVMCVWGG-VTWFSRTQKSVTLSTTEAEYVAIADVLKEVLFLRQV 239
BLAST of mRNA_H-paniculata_contig3401.9089.1 vs. uniprot
Match: A0A6H5KD14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD14_9PHAE) HSP 1 Score: 88.6 bits (218), Expect = 2.020e-19 Identity = 50/113 (44.25%), Postives = 70/113 (61.95%), Query Frame = 1
Query: 4 AVGTIAKFCENPGMAHKKAVEKILQYVLRIADLGITYG-G*NSERKMLTYADSEYAACPDSRRSVSSGTVLLLEGGAICWYSRTQEVAAAGTSEAEYVALAEIVNEVLFPRHV 339
AV +A++C +P M H KA IL YV R +GIT+ G + M + D +YA+ RRSVS G V+ EGG + W+SRT++ T+EAEYVA+A+++ EVLF R V
Sbjct: 52 AVQAVARYCASPKMVHWKAPLGILGYVCRTNWMGITFERGVVTGMSMQVFVDPDYASKAADRRSVSGGLVMR-EGGGVTWFSRTKKCVTLSTTEAEYVAIADVMKEVLFLRQV 163
BLAST of mRNA_H-paniculata_contig3401.9089.1 vs. uniprot
Match: A0A6H5KP70_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP70_9PHAE) HSP 1 Score: 90.5 bits (223), Expect = 2.310e-19 Identity = 50/113 (44.25%), Postives = 71/113 (62.83%), Query Frame = 1
Query: 4 AVGTIAKFCENPGMAHKKAVEKILQYVLRIADLGITYG-G*NSERKMLTYADSEYAACPDSRRSVSSGTVLLLEGGAICWYSRTQEVAAAGTSEAEYVALAEIVNEVLFPRHV 339
AV +A++C +P M H KA IL YV R + +GIT+ G + M + D++YA+ RRSVS G V+ GG + W+SRTQ+ T+EAEYVA+A+++ EVLF R V
Sbjct: 121 AVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMC-GGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQV 232
BLAST of mRNA_H-paniculata_contig3401.9089.1 vs. uniprot
Match: A0A8J2WCA4_9CRUS (Hypothetical protein n=1 Tax=Daphnia galeata TaxID=27404 RepID=A0A8J2WCA4_9CRUS) HSP 1 Score: 92.0 bits (227), Expect = 2.550e-19 Identity = 45/111 (40.54%), Postives = 70/111 (63.06%), Query Frame = 1
Query: 1 YAVGTIAKFCENPGMAHKKAVEKILQYVLRIADLGITYGG*NSERKMLTYADSEYAACPDSRRSVSSGTVLLLEGGAICWYSRTQEVAAAGTSEAEYVALAEIVNEVLFPR 333
+AVG +++F NPG H +AV++IL Y+ G+ + G + + L Y+DS+YA CPD+RRS ++GT+ +L GG I W SR Q+ A ++EAEY A + E ++ R
Sbjct: 1194 FAVGQVSRFSVNPGPVHWEAVKRILSYLAGTPRHGLCFTGTDLSNQFLGYSDSDYAGCPDTRRS-TTGTLFILNGGPISWKSRIQKPVACSSTEAEYYAAGDAAREAVWLR 1303
BLAST of mRNA_H-paniculata_contig3401.9089.1 vs. uniprot
Match: A0A6H5L4G9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G9_9PHAE) HSP 1 Score: 90.5 bits (223), Expect = 4.080e-19 Identity = 50/113 (44.25%), Postives = 71/113 (62.83%), Query Frame = 1
Query: 4 AVGTIAKFCENPGMAHKKAVEKILQYVLRIADLGITYG-G*NSERKMLTYADSEYAACPDSRRSVSSGTVLLLEGGAICWYSRTQEVAAAGTSEAEYVALAEIVNEVLFPRHV 339
AV +A++C +P M H KA IL YV R + +GIT+ G + M + D++YA+ RRSVS G V+ GG + W+SRTQ+ T+EAEYVA+A+++ EVLF R V
Sbjct: 176 AVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMC-GGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQV 287
BLAST of mRNA_H-paniculata_contig3401.9089.1 vs. uniprot
Match: A0A6H5JEF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF2_9PHAE) HSP 1 Score: 90.5 bits (223), Expect = 6.060e-19 Identity = 50/113 (44.25%), Postives = 71/113 (62.83%), Query Frame = 1
Query: 4 AVGTIAKFCENPGMAHKKAVEKILQYVLRIADLGITYG-G*NSERKMLTYADSEYAACPDSRRSVSSGTVLLLEGGAICWYSRTQEVAAAGTSEAEYVALAEIVNEVLFPRHV 339
AV +A++C +P M H KA IL YV R + +GIT+ G + M + D++YA+ RRSVS G V+ GG + W+SRTQ+ T+EAEYVA+A+++ EVLF R V
Sbjct: 238 AVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMC-GGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQV 349
BLAST of mRNA_H-paniculata_contig3401.9089.1 vs. uniprot
Match: A0A6H5K3H6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3H6_9PHAE) HSP 1 Score: 90.9 bits (224), Expect = 6.410e-19 Identity = 50/113 (44.25%), Postives = 71/113 (62.83%), Query Frame = 1
Query: 4 AVGTIAKFCENPGMAHKKAVEKILQYVLRIADLGITY-GG*NSERKMLTYADSEYAACPDSRRSVSSGTVLLLEGGAICWYSRTQEVAAAGTSEAEYVALAEIVNEVLFPRHV 339
AV +A++C +P M H KA IL YV R + +GIT+ G + M + D++YA+ RRSVS G V+ GG + W+SRTQ+ T+EAEYVA+A+++ EVLF R V
Sbjct: 774 AVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFENGVVTGMSMQVFVDADYASKAADRRSVSGGLVMC-GGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQV 885
BLAST of mRNA_H-paniculata_contig3401.9089.1 vs. uniprot
Match: A0A6H5KD11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD11_9PHAE) HSP 1 Score: 90.5 bits (223), Expect = 8.660e-19 Identity = 50/113 (44.25%), Postives = 71/113 (62.83%), Query Frame = 1
Query: 4 AVGTIAKFCENPGMAHKKAVEKILQYVLRIADLGITYG-G*NSERKMLTYADSEYAACPDSRRSVSSGTVLLLEGGAICWYSRTQEVAAAGTSEAEYVALAEIVNEVLFPRHV 339
AV +A++C +P M H KA IL YV R + +GIT+ G + M + D++YA+ RRSVS G V+ GG + W+SRTQ+ T+EAEYVA+A+++ EVLF R V
Sbjct: 128 AVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMC-GGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQV 239 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3401.9089.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3401.9089.1 >prot_H-paniculata_contig3401.9089.1 ID=prot_H-paniculata_contig3401.9089.1|Name=mRNA_H-paniculata_contig3401.9089.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=70bp MLTYADSEYAACPDSRRSVSSGTVLLLEGGAICWYSRTQEVAAAGTSEAEback to top mRNA from alignment at H-paniculata_contig3401:4834..5181- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig3401.9089.1 ID=mRNA_H-paniculata_contig3401.9089.1|Name=mRNA_H-paniculata_contig3401.9089.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=348bp|location=Sequence derived from alignment at H-paniculata_contig3401:4834..5181- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig3401:4834..5181- >mRNA_H-paniculata_contig3401.9089.1 ID=mRNA_H-paniculata_contig3401.9089.1|Name=mRNA_H-paniculata_contig3401.9089.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at H-paniculata_contig3401:4834..5181- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |