mRNA_H-paniculata_contig33974.9072.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig33974.9072.1
Unique NamemRNA_H-paniculata_contig33974.9072.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig33974.9072.1 vs. uniprot
Match: A0A1Y1LDU4_PHOPY (Uncharacterized protein (Fragment) n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1LDU4_PHOPY)

HSP 1 Score: 58.2 bits (139), Expect = 5.050e-7
Identity = 40/133 (30.08%), Postives = 62/133 (46.62%), Query Frame = 1
Query:   13 KCKKVGHKTERCPDQVCQECDAFIA-EDFAGECGMFIDVGKSRELGVRVEEESWICDSGATGHVTPSAANMSSYRQVKETLRI----ASGQVIPIVGRGNLSMTFRTSNGNVSLSVLNVAHAPELHYNLFSLR 396
            KC K GH  ++C +Q   + +      +     G F+      E       + W+CDSGA+ H+T S    SSY   K T RI    ASG  +  +G GN+++         + ++ NV + P + Y+LFS R
Sbjct:  237 KCNKKGHLAKQCRNQTSDKTNENKKMNNEPVSSGAFV-----AETNSNGNADGWVCDSGASDHMTGSKHYFSSYEAFK-TPRIVGTAASGSSLHAIGMGNINVLMTVHGQQRTATLYNVLYVPGMSYHLFSSR 363          
BLAST of mRNA_H-paniculata_contig33974.9072.1 vs. uniprot
Match: A0A445M2Q0_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Glycine soja TaxID=3848 RepID=A0A445M2Q0_GLYSO)

HSP 1 Score: 58.2 bits (139), Expect = 5.090e-7
Identity = 34/86 (39.53%), Postives = 56/86 (65.12%), Query Frame = 1
Query:  163 ESWICDSGATGHVTPSAANMSSYRQVK-ETLRIASGQVIPIVGRGNLSMTFRTSNGNVSLSVLNVAHAPELHYNLFSLRKVADAGH 417
            +SWI DSGA+ H TPS   +S+Y   +   + +A G+ + IVGRG++++  +TS+G++  ++ NV H P L  NL S+ ++ D GH
Sbjct:  265 DSWIMDSGASFHTTPSKDLLSNYVSGRFGKVYLADGKSLDIVGRGDINI--KTSSGSL-WTLHNVRHIPALKRNLISIGQLDDEGH 347          
BLAST of mRNA_H-paniculata_contig33974.9072.1 vs. uniprot
Match: A0A445M280_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Glycine soja TaxID=3848 RepID=A0A445M280_GLYSO)

HSP 1 Score: 58.2 bits (139), Expect = 5.210e-7
Identity = 34/86 (39.53%), Postives = 56/86 (65.12%), Query Frame = 1
Query:  163 ESWICDSGATGHVTPSAANMSSYRQVK-ETLRIASGQVIPIVGRGNLSMTFRTSNGNVSLSVLNVAHAPELHYNLFSLRKVADAGH 417
            +SWI DSGA+ H TPS   +S+Y   +   + +A G+ + IVGRG++++  +TS+G++  ++ NV H P L  NL S+ ++ D GH
Sbjct: 1161 DSWIMDSGASFHTTPSKDLLSNYVSGRFGKVYLADGKSLDIVGRGDINI--KTSSGSL-WTLHNVRHIPALKRNLISIGQLDDEGH 1243          
BLAST of mRNA_H-paniculata_contig33974.9072.1 vs. uniprot
Match: A0A151QVU7_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151QVU7_CAJCA)

HSP 1 Score: 57.8 bits (138), Expect = 6.090e-7
Identity = 42/139 (30.22%), Postives = 72/139 (51.80%), Query Frame = 1
Query:    7 CGKCKKVGHKTERCPDQVCQECDAFIAEDFAGECGMFIDVGKSRELGVRVEEESWICDSGATGHVTPSAANMSSYRQVK-ETLRIASGQVIPIVGRGNLSMTFRTSNGNVSLSVLNVAHAPELHYNLFSLRKVADAGHK 420
            C  C K GH T +C      +      +D +       ++  +    +    ESWI DSGA+ H TPS   +++Y   +   + +A G+ + IVG+G++++  RTS+G+   ++ NV H P L  NL S+ ++ D GH+
Sbjct:  237 CWNCDKRGHFTNQCKAPKKNKNHKKRDDDESANAATD-EIDDALICSLDSPIESWIMDSGASFHTTPSNELLTNYVSGRFGKVYLADGKPLNIVGKGDIAI--RTSSGS-HWTLKNVRHIPALKRNLISVGQLDDEGHE 371          
BLAST of mRNA_H-paniculata_contig33974.9072.1 vs. uniprot
Match: A0A151TNK0_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151TNK0_CAJCA)

HSP 1 Score: 57.8 bits (138), Expect = 6.900e-7
Identity = 42/139 (30.22%), Postives = 72/139 (51.80%), Query Frame = 1
Query:    7 CGKCKKVGHKTERCPDQVCQECDAFIAEDFAGECGMFIDVGKSRELGVRVEEESWICDSGATGHVTPSAANMSSYRQVK-ETLRIASGQVIPIVGRGNLSMTFRTSNGNVSLSVLNVAHAPELHYNLFSLRKVADAGHK 420
            C  C K GH T +C      +      +D +       ++  +    +    ESWI DSGA+ H TPS   +++Y   +   + +A G+ + IVG+G++++  RTS+G+   ++ NV H P L  NL S+ ++ D GH+
Sbjct:  215 CWNCDKRGHFTNQCKAPKKNKNHKKRDDDESANAATD-EIDDALICSLDSPIESWIMDSGASFHTTPSNELLTNYVSGRFGKVYLADGKPLNIVGKGDIAI--RTSSGS-HWTLKNVRHIPALKRNLISVGQLDDEGHE 349          
BLAST of mRNA_H-paniculata_contig33974.9072.1 vs. uniprot
Match: A0A6H5HW13_9HYME (Uncharacterized protein n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5HW13_9HYME)

HSP 1 Score: 56.2 bits (134), Expect = 2.400e-6
Identity = 37/138 (26.81%), Postives = 62/138 (44.93%), Query Frame = 1
Query:    1 FKCGKCKKVGHKTERCPDQVCQECDAFIAEDFAGECGMFIDVGKSRELGVRVEEESWICDSGATGHVTPSAANMSSYRQVKETLRIASGQVIPIVGRGNLSMTFRTSNGNVSLSVLNVAHAPELHYNLFSLRKVADAG 414
            +KCG CKK GHK   C  +  ++C      + +G C  F               E W  DSG+T H+    +   +  +    L++AS     I  +G+++ +    N   ++++ N  + P +  NL S+ KV DAG
Sbjct:  782 YKCGFCKKKGHKEANCFKK--KKCLEEAKSETSGLC-FFTSA---------TTNEKWCLDSGSTSHICGDESKFKNISRASGCLQLASDATATIRAKGDVNTS---DNALRNITLKNTLYVPNVRSNLVSVAKVVDAG 904          
BLAST of mRNA_H-paniculata_contig33974.9072.1 vs. uniprot
Match: A0A485L7G2_9STRA (Aste57867_16617 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L7G2_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 3.850e-6
Identity = 30/85 (35.29%), Postives = 46/85 (54.12%), Query Frame = 1
Query:  160 EESWICDSGATGHVTPSAANMSSYRQVKETLRIASGQVIPIVGRGNLSMTFRTSNGNVSLSVL--NVA-----HAPELHYNLFSL 393
            ++ WI DSGAT   TP+    S Y   K++LR+A G+++ ++G G L + F  S  +    V   NV      H P+L +NL S+
Sbjct:  362 KDHWIIDSGATASTTPTRTFFSKYVPCKQSLRVADGKMLAVIGYGELCLRFNLSEPDPPAQVRKGNVLFTFGLHCPDLKFNLLSV 446          
BLAST of mRNA_H-paniculata_contig33974.9072.1 vs. uniprot
Match: H3H469_PHYRM (Retrotran_gag_3 domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H469_PHYRM)

HSP 1 Score: 55.1 bits (131), Expect = 5.330e-6
Identity = 29/89 (32.58%), Postives = 51/89 (57.30%), Query Frame = 1
Query:  160 EESWICDSGATGHVTPSAANMSSYRQV-KETLRIASGQVIPIVGRGNLSMTFRTSNGNVSL-SVLNVAHAPELHYNLFSLRKVADAGHK 420
            + +W  DSG T +VT S       + +  +T+ +     IPI+G+G ++MT   + G+  + S+ +V +APEL +NL S+R+  D  +K
Sbjct:  378 DPAWTIDSGCTRYVTSSPHWFEDLKPIIGKTITVGGNHQIPILGKGTVNMTVTDTKGSKRIISLSDVLYAPELKFNLLSVRQAVDGDYK 466          
BLAST of mRNA_H-paniculata_contig33974.9072.1 vs. uniprot
Match: A0A6H5IVE4_9HYME (Integrase catalytic domain-containing protein n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5IVE4_9HYME)

HSP 1 Score: 54.3 bits (129), Expect = 9.250e-6
Identity = 36/138 (26.09%), Postives = 62/138 (44.93%), Query Frame = 1
Query:    1 FKCGKCKKVGHKTERCPDQVCQECDAFIAEDFAGECGMFIDVGKSRELGVRVEEESWICDSGATGHVTPSAANMSSYRQVKETLRIASGQVIPIVGRGNLSMTFRTSNGNVSLSVLNVAHAPELHYNLFSLRKVADAG 414
            +KCG CKK GHK   C  +  ++C      + +G C  F               E W  DSG+T H+    +   +  +    L++AS     I  +G+++ +    N   ++++ +  + P +  NL S+ KV DAG
Sbjct:   34 YKCGFCKKKGHKEANCFKK--KKCLEEAKSETSGLC-FFTSA---------TTNEKWCLDSGSTSHICGDESKFKNISRASGCLQLASDATATIRAKGDVNTS---DNALRNITLKDTLYVPNVRSNLVSVAKVVDAG 156          
BLAST of mRNA_H-paniculata_contig33974.9072.1 vs. uniprot
Match: A0A167YPV7_9EURO (Reverse transcriptase, RNA-dependent DNA polymerase n=1 Tax=Ascosphaera apis ARSEF 7405 TaxID=392613 RepID=A0A167YPV7_9EURO)

HSP 1 Score: 53.9 bits (128), Expect = 1.510e-5
Identity = 33/98 (33.67%), Postives = 53/98 (54.08%), Query Frame = 1
Query:  151 RVEEESWICDSGATGHVTPSA---ANMSSYRQVKETLRIASGQVIPIVGRGNLSMTFRTSNGNVSLSVL-NVAHAPELHYNLFSLRKVADAGHKYVGD 432
            +V    +  D+ AT H+ P+     ++S YR    T+  ASG  +PI G+GN+ +    SNG+VS   L NV + P++  +L S R++   G+   GD
Sbjct:  320 KVNNRPFYLDTCATSHMCPNPDRFESLSIYRGPLSTVTSASGDEMPIEGKGNVIVNCLLSNGSVSTCRLTNVLYVPQIGKSLVSYRQIMHKGYSLQGD 417          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig33974.9072.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A1Y1LDU4_PHOPY5.050e-730.08Uncharacterized protein (Fragment) n=1 Tax=Photinu... [more]
A0A445M2Q0_GLYSO5.090e-739.53Retrovirus-related Pol polyprotein from transposon... [more]
A0A445M280_GLYSO5.210e-739.53Retrovirus-related Pol polyprotein from transposon... [more]
A0A151QVU7_CAJCA6.090e-730.22Retrovirus-related Pol polyprotein from transposon... [more]
A0A151TNK0_CAJCA6.900e-730.22Retrovirus-related Pol polyprotein from transposon... [more]
A0A6H5HW13_9HYME2.400e-626.81Uncharacterized protein n=1 Tax=Trichogramma brass... [more]
A0A485L7G2_9STRA3.850e-635.29Aste57867_16617 protein n=1 Tax=Aphanomyces stella... [more]
H3H469_PHYRM5.330e-632.58Retrotran_gag_3 domain-containing protein n=1 Tax=... [more]
A0A6H5IVE4_9HYME9.250e-626.09Integrase catalytic domain-containing protein n=1 ... [more]
A0A167YPV7_9EURO1.510e-533.67Reverse transcriptase, RNA-dependent DNA polymeras... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig33974contigH-paniculata_contig33974:868..1404 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.0
Seed ortholog evalue8.3e-09
Seed eggNOG ortholog164328.Phyra86833
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs3QHRV@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons2
Model size441
Cds size441
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930047.7084272-CDS-H-paniculata_contig33974:867..12421622930047.7084272-CDS-H-paniculata_contig33974:867..1242Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33974 868..1242 -
1691481125.2686353-CDS-H-paniculata_contig33974:867..12421691481125.2686353-CDS-H-paniculata_contig33974:867..1242Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33974 868..1242 -
1622930047.7241347-CDS-H-paniculata_contig33974:1338..14041622930047.7241347-CDS-H-paniculata_contig33974:1338..1404Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33974 1339..1404 -
1691481125.2777932-CDS-H-paniculata_contig33974:1338..14041691481125.2777932-CDS-H-paniculata_contig33974:1338..1404Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33974 1339..1404 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig33974.9072.1prot_H-paniculata_contig33974.9072.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig33974 868..1404 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig33974.9072.1

>prot_H-paniculata_contig33974.9072.1 ID=prot_H-paniculata_contig33974.9072.1|Name=mRNA_H-paniculata_contig33974.9072.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=147bp
FKCGKCKKVGHKTERCPDQVCQECDAFIAEDFAGECGMFIDVGKSRELGV
RVEEESWICDSGATGHVTPSAANMSSYRQVKETLRIASGQVIPIVGRGNL
SMTFRTSNGNVSLSVLNVAHAPELHYNLFSLRKVADAGHKYVGDCDG
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mRNA from alignment at H-paniculata_contig33974:868..1404-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig33974.9072.1 ID=mRNA_H-paniculata_contig33974.9072.1|Name=mRNA_H-paniculata_contig33974.9072.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=537bp|location=Sequence derived from alignment at H-paniculata_contig33974:868..1404- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCAAGTGTGGGAAGTGTAAGAAGGTGGGGCACAAAACAGAGCGTTGTCC CGACCAGGTGTGTCAAGTATGTGGGGGAAAGGGGCATTACTCTGATGTGT GTTCTACCCTACATGAGATGACTGTGGTGGCTTTCCAAGAAGAAGAATGT TCGGGTGATGAGGAGTGTGACGCCTTCATCGCCGAAGACTTCGCAGGCGA GTGTGGTATGTTCATAGATGTGGGAAAGTCGAGAGAGCTTGGCGTTAGAG TAGAGGAAGAGTCGTGGATTTGTGATAGTGGGGCCACAGGTCATGTAACA CCATCTGCGGCTAACATGTCTAGCTATCGGCAAGTCAAAGAGACGCTGCG GATTGCATCAGGACAAGTGATCCCGATTGTTGGTCGGGGAAACCTGAGCA TGACATTTAGGACGAGTAATGGAAATGTGTCTCTCTCGGTTCTGAATGTC GCACATGCCCCTGAACTGCACTACAATTTATTTTCGCTGAGGAAAGTGGC CGATGCCGGTCACAAATATGTTGGGGATTGTGATGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig33974:868..1404-

>mRNA_H-paniculata_contig33974.9072.1 ID=mRNA_H-paniculata_contig33974.9072.1|Name=mRNA_H-paniculata_contig33974.9072.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=882bp|location=Sequence derived from alignment at H-paniculata_contig33974:868..1404- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCAAGTGTGGGAAGTGTAAGAAGGTGGGGCACAAAACAGAGCGTTGTCC
CGACCAGGTGTGTCAATTCAAGTGTGGGAAGTGTAAGAAGGTGGGGCACA
AAACAGAGCGTTGTCCCGACCAGGTGTGTCAAGAGTGTGACGCCTTCATC
GCCGAAGACTTCGCAGGCGAGTGTGGTATGTTCATAGATGTGGGAAAGTC
GAGAGAGCTTGGCGTTAGAGTAGAGGAAGAGTCGTGGATTTGTGATAGTG
GGGCCACAGGTCATGTAACACCATCTGCGGCTAACATGTCTAGCTATCGG
CAAGTCAAAGAGACGCTGCGGATTGCATCAGGACAAGTGATCCCGATTGT
TGGTCGGGGAAACCTGAGCATGACATTTAGGACGAGTAATGGAAATGTGT
CTCTCTCGGTTCTGAATGTCGCACATGCCCCTGAACTGCACTACAATTTA
TTTTCGCTGAGGAAAGTGGCCGATGCCGGTCACAAATATGTTGGGGATTG
TGATGGAGAGTGTGACGCCTTCATCGCCGAAGACTTCGCAGGCGAGTGTG
GTATGTTCATAGATGTGGGAAAGTCGAGAGAGCTTGGCGTTAGAGTAGAG
GAAGAGTCGTGGATTTGTGATAGTGGGGCCACAGGTCATGTAACACCATC
TGCGGCTAACATGTCTAGCTATCGGCAAGTCAAAGAGACGCTGCGGATTG
CATCAGGACAAGTGATCCCGATTGTTGGTCGGGGAAACCTGAGCATGACA
TTTAGGACGAGTAATGGAAATGTGTCTCTCTCGGTTCTGAATGTCGCACA
TGCCCCTGAACTGCACTACAATTTATTTTCGCTGAGGAAAGTGGCCGATG
CCGGTCACAAATATGTTGGGGATTGTGATGGA
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