mRNA_H-paniculata_contig33907.9059.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig33907.9059.1
Unique NamemRNA_H-paniculata_contig33907.9059.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig33907.9059.1 vs. uniprot
Match: D7G200_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G200_ECTSI)

HSP 1 Score: 132 bits (331), Expect = 1.980e-34
Identity = 72/127 (56.69%), Postives = 80/127 (62.99%), Query Frame = 1 
Query:   10 MRIAAGTYEGFCYGWET------ALEPGKPSGT-------------------------------LSLAFGYNVHVGCLKSVAMATSGTRAGRLLVTGGADERVRIYDMKDRTELGELQQHNGEIISM 279
            MRI AGTYEGFCYGWE+      A+     SGT                               LSL FGYNVHVGC+KSVA+ATSG+RAG+LLVTGGADERVRIYD++DRTELGELQQHNG I  M
Sbjct:    1 MRIVAGTYEGFCYGWESNNTESAAVGAESLSGTTTTDTKGVKNXXXXXXXXXXXXXXXXTPPQPLSLVFGYNVHVGCMKSVAIATSGSRAGQLLVTGGADERVRIYDLRDRTELGELQQHNGTITCM 127
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BLAST of mRNA_H-paniculata_contig33907.9059.1 vs. uniprot
Match: A0A836CGS2_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGS2_9STRA)

HSP 1 Score: 110 bits (275), Expect = 2.940e-26
Identity = 49/90 (54.44%), Postives = 65/90 (72.22%), Query Frame = 1 
Query:   10 MRIAAGTYEGFCYGWETALEPGKPSGTLSLAFGYNVHVGCLKSVAMATSGTRAGRLLVTGGADERVRIYDMKDRTELGELQQHNGEIISM 279
            M+I  GT EGF YG++   +      TLS+A+GY VH GC+KS+A+A  GT AG++LVTGG DER+RIYD+  RTE GELQQH+G +  +
Sbjct:    1 MKIVGGTLEGFLYGFDHPDDEATAPDTLSMAYGYKVHAGCVKSLAIAEKGTLAGKMLVTGGTDERIRIYDLGQRTEKGELQQHSGTVTCL 90
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BLAST of mRNA_H-paniculata_contig33907.9059.1 vs. uniprot
Match: A0A7R9Y9Y4_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y9Y4_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 2.820e-19
Identity = 46/97 (47.42%), Postives = 61/97 (62.89%), Query Frame = 1 
Query:   16 IAAGTYEGFCYGWET-------ALE--PGKPSGTLSLAFGYNVHVGCLKSVAMATSGTRAGRLLVTGGADERVRIYDMKDRTELGELQQHNGEIISM 279
            + AGTY G   G  T       A E  P +PS  L L+F Y  H+GC+KS+A+ T+  R G LLV+GG DER+RIYD+  + E+GELQQHNG +  +
Sbjct:    7 VVAGTYYGDLIGLSTEKPEGSEAKESAPDQPS-PLQLSFAYRAHIGCIKSLALCTTQKRGGALLVSGGTDERIRIYDLALKAEVGELQQHNGAVTCL 102
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BLAST of mRNA_H-paniculata_contig33907.9059.1 vs. uniprot
Match: A0A7R9U2R5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U2R5_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 8.660e-19
Identity = 46/97 (47.42%), Postives = 61/97 (62.89%), Query Frame = 1 
Query:   16 IAAGTYEGFCYGWET-------ALE--PGKPSGTLSLAFGYNVHVGCLKSVAMATSGTRAGRLLVTGGADERVRIYDMKDRTELGELQQHNGEIISM 279
            + AGTY G   G  T       A E  P +PS  L L+F Y  H+GC+KS+A+ T+  R G LLV+GG DER+RIYD+  + E+GELQQHNG +  +
Sbjct:    7 VVAGTYYGDLIGLSTEKPEGSEAKESAPDQPS-PLQLSFAYRAHIGCIKSLALCTTQKRGGALLVSGGTDERIRIYDLALKAEVGELQQHNGAVTCL 102
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BLAST of mRNA_H-paniculata_contig33907.9059.1 vs. uniprot
Match: K8ZAK0_NANGC (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8ZAK0_NANGC)

HSP 1 Score: 82.8 bits (203), Expect = 1.610e-16
Identity = 37/86 (43.02%), Postives = 53/86 (61.63%), Query Frame = 1 
Query:   22 AGTYEGFCYGWETALEPGKPSGTLSLAFGYNVHVGCLKSVAMATSGTRAGRLLVTGGADERVRIYDMKDRTELGELQQHNGEIISM 279
            AGTY+G   GWE   E    +  L + F Y  H G ++S+A+   G +AG LLV+GG DE +R+YD++ R E+GEL  H G I ++
Sbjct:   30 AGTYDGGIAGWELQREGQNQTTGLKMIFAYTPHQGSVRSLAIPQGGVKAGSLLVSGGVDEHIRMYDLRKRAEVGELLHHKGTITAL 115
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BLAST of mRNA_H-paniculata_contig33907.9059.1 vs. uniprot
Match: A0A7S3YLB8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YLB8_HETAK)

HSP 1 Score: 69.7 bits (169), Expect = 2.200e-13
Identity = 28/63 (44.44%), Postives = 45/63 (71.43%), Query Frame = 1 
Query:   91 LSLAFGYNVHVGCLKSVAMATSGTRAGRLLVTGGADERVRIYDMKDRTELGELQQHNGEIISM 279
            + L++  + H G +K +++  +G + GR+LVTGG DE +RIYD+  + ELGELQQH+G I ++
Sbjct:   16 VQLSYALHAHEGSVKCLSITQTGAKQGRILVTGGNDELIRIYDLSKKVELGELQQHSGTISTL 78
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BLAST of mRNA_H-paniculata_contig33907.9059.1 vs. uniprot
Match: W7TL70_9STRA (Pak1ip1 protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TL70_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 4.520e-11
Identity = 28/62 (45.16%), Postives = 41/62 (66.13%), Query Frame = 1 
Query:   94 SLAFGYNVHVGCLKSVAMATSGTRAGRLLVTGGADERVRIYDMKDRTELGELQQHNGEIISM 279
            S  F Y  H G ++S+A+   G +AG LLV+GG DE +R+YD++ R E+GEL  H G I ++
Sbjct:   37 SQIFAYTPHQGSVRSLAIPQGGVKAGSLLVSGGVDEHIRMYDLRKRAEVGELLHHKGTITAL 98
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BLAST of mRNA_H-paniculata_contig33907.9059.1 vs. uniprot
Match: A0A197JVZ4_9FUNG (WD40 repeat-like protein n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197JVZ4_9FUNG)

HSP 1 Score: 67.4 bits (163), Expect = 4.640e-11
Identity = 35/90 (38.89%), Postives = 49/90 (54.44%), Query Frame = 1 
Query:   10 MRIAAGTYEGFCYGWETALEPGKPSGTLSLAFGYNVHVGCLKSVAMATSGTRAGRLLVTGGADERVRIYDMKDRTELGELQQHNGEIISM 279
             RI AGTYE   YG +           LS  F +  H+GC+KS+A+       G  L +G  DE++++YD+K R ELG L QH G I ++
Sbjct:  134 FRIVAGTYENILYGVDAYWNEDMTL-RLSPIFIFPAHIGCIKSLAIG------GHFLASGSTDEKIQLYDLKRRKELGALLQHQGTITAL 216
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BLAST of mRNA_H-paniculata_contig33907.9059.1 vs. uniprot
Match: A0A1B6KFX6_9HEMI (Uncharacterized protein (Fragment) n=1 Tax=Graphocephala atropunctata TaxID=36148 RepID=A0A1B6KFX6_9HEMI)

HSP 1 Score: 64.3 bits (155), Expect = 9.370e-11
Identity = 34/90 (37.78%), Postives = 51/90 (56.67%), Query Frame = 1 
Query:   10 MRIAAGTYEGFCYGWETALEPGKPSGTLSLAFGYNVHVGCLKSVAMATSGTRAGRLLVTGGADERVRIYDMKDRTELGELQQHNGEIISM 279
              +  GTYE F  G++  +E G  S  L+ +F  + H   +++VA        G+L+V+GGADE + IY+M  R E G L +HNG I S+
Sbjct:    8 FEVIVGTYEEFVLGYQFIIEDGSKS-KLTQSFATHSHRASVRAVASC------GKLVVSGGADETINIYNMFTRKECGMLMEHNGTITSL 90
[Close]
BLAST of mRNA_H-paniculata_contig33907.9059.1 vs. uniprot
Match: A0A1Y2GPT4_9FUNG (WD40-repeat-containing domain protein n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2GPT4_9FUNG)

HSP 1 Score: 65.9 bits (159), Expect = 1.620e-10
Identity = 34/90 (37.78%), Postives = 49/90 (54.44%), Query Frame = 1 
Query:   10 MRIAAGTYEGFCYGWETALEPGKPSGTLSLAFGYNVHVGCLKSVAMATSGTRAGRLLVTGGADERVRIYDMKDRTELGELQQHNGEIISM 279
             RI AGTYE   YG +           LS  F +  H+GC+K++A+       G  L +G  DE++++YD+K R ELG L QH G I ++
Sbjct:  131 FRIIAGTYENILYGIDAYWNEDMTL-RLSPIFIFAAHIGCIKALAIG------GHFLASGSTDEKIQLYDLKRRKELGALLQHQGTITTL 213
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig33907.9059.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G200_ECTSI1.980e-3456.69Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CGS2_9STRA2.940e-2654.44WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
A0A7R9Y9Y4_9STRA2.820e-1947.42Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7R9U2R5_9STRA8.660e-1947.42Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
K8ZAK0_NANGC1.610e-1643.02Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S3YLB8_HETAK2.200e-1344.44Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
W7TL70_9STRA4.520e-1145.16Pak1ip1 protein n=1 Tax=Nannochloropsis gaditana T... [more]
A0A197JVZ4_9FUNG4.640e-1138.89WD40 repeat-like protein n=1 Tax=Linnemannia elong... [more]
A0A1B6KFX6_9HEMI9.370e-1137.78Uncharacterized protein (Fragment) n=1 Tax=Graphoc... [more]
A0A1Y2GPT4_9FUNG1.620e-1037.78WD40-repeat-containing domain protein n=1 Tax=Lobo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig33907contigH-paniculata_contig33907:1959..2309 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.3
Seed ortholog evalue2.2e-28
Seed eggNOG ortholog2880.D7G200
Preferred namePAK1IP1
KEGG koko:K11684,ko:K14830,ko:K18272
Hectar predicted targeting categoryother localisation
GOsGO:0000027,GO:0000460,GO:0000463,GO:0000466,GO:0000470,GO:0001932,GO:0001933,GO:0003674,GO:0004857,GO:0004860,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006469,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008283,GO:0009892,GO:0009966,GO:0009987,GO:0010467,GO:0010563,GO:0010605,GO:0010646,GO:0016020,GO:0016043,GO:0016070,GO:0016072,GO:0019207,GO:0019210,GO:0019220,GO:0019222,GO:0019887,GO:0022607,GO:0022613,GO:0022618,GO:0023051,GO:0030234,GO:0030684,GO:0030685,GO:0031323,GO:0031324,GO:0031399,GO:0031400,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032502,GO:0032886,GO:0032956,GO:0032970,GO:0032991,GO:0033043,GO:0033673,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0042254,GO:0042255,GO:0042273,GO:0042325,GO:0042326,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043549,GO:0043933,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0045859,GO:0045936,GO:0046483,GO:0048519,GO:0048523,GO:0048583,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0051128,GO:0051171,GO:0051172,GO:0051174,GO:0051246,GO:0051248,GO:0051338,GO:0051348,GO:0051493,GO:0060021,GO:0060255,GO:0065003,GO:0065007,GO:0065009,GO:0070013,GO:0070507,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0098772,GO:1901360,GO:1901796,GO:1902531,GO:1990904
EggNOG free text desc.ribosomal large subunit biogenesis
EggNOG OGsKOG0294@1,KOG0294@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009,ko03036,ko04147
Exons2
Model size282
Cds size273
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig33907.9059.1prot_H-paniculata_contig33907.9059.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig33907 1968..2309 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930046.1165442-UTR-H-paniculata_contig33907:1958..19671622930046.1165442-UTR-H-paniculata_contig33907:1958..1967Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig33907 1959..1967 +
1691481124.5464272-UTR-H-paniculata_contig33907:1958..19671691481124.5464272-UTR-H-paniculata_contig33907:1958..1967Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig33907 1959..1967 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930046.1315827-CDS-H-paniculata_contig33907:1967..20481622930046.1315827-CDS-H-paniculata_contig33907:1967..2048Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33907 1968..2048 +
1691481124.5584712-CDS-H-paniculata_contig33907:1967..20481691481124.5584712-CDS-H-paniculata_contig33907:1967..2048Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33907 1968..2048 +
1622930046.1464262-CDS-H-paniculata_contig33907:2117..23091622930046.1464262-CDS-H-paniculata_contig33907:2117..2309Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33907 2118..2309 +
1691481124.5676143-CDS-H-paniculata_contig33907:2117..23091691481124.5676143-CDS-H-paniculata_contig33907:2117..2309Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33907 2118..2309 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig33907.9059.1

>prot_H-paniculata_contig33907.9059.1 ID=prot_H-paniculata_contig33907.9059.1|Name=mRNA_H-paniculata_contig33907.9059.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=91bp
MRIAAGTYEGFCYGWETALEPGKPSGTLSLAFGYNVHVGCLKSVAMATSG
TRAGRLLVTGGADERVRIYDMKDRTELGELQQHNGEIISM*
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mRNA from alignment at H-paniculata_contig33907:1959..2309+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig33907.9059.1 ID=mRNA_H-paniculata_contig33907.9059.1|Name=mRNA_H-paniculata_contig33907.9059.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=351bp|location=Sequence derived from alignment at H-paniculata_contig33907:1959..2309+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGAGTGCCATGAGAATTGCAGCAGGCACATATGAAGGTTTCTGTTACGG
GTGGGAAACTGCCCTTGAACCCGGTAAGCCCAGCGGTACTGTAGCAGGCG
ACGACAGCAACAGCGACAGCCTGCCCTTGGACACCACCAATGTTGACTCT
CCCGATCAGCTGTCGCTGGCTTTCGGATACAACGTTCATGTGGGATGCTT
GAAGTCGGTGGCTATGGCGACCTCGGGTACCCGCGCGGGTCGACTACTGG
TGACAGGTGGCGCCGATGAACGTGTGCGAATATACGACATGAAAGATCGG
ACTGAGCTGGGTGAACTCCAGCAGCACAACGGTGAGATCATATCTATGTG
A
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Coding sequence (CDS) from alignment at H-paniculata_contig33907:1959..2309+

>mRNA_H-paniculata_contig33907.9059.1 ID=mRNA_H-paniculata_contig33907.9059.1|Name=mRNA_H-paniculata_contig33907.9059.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=546bp|location=Sequence derived from alignment at H-paniculata_contig33907:1959..2309+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGAATTGCAGCAGGCACATATGAAGGTTTCTGTTACGGGTGGGAAAC
TGCCCTTGAACCCGGTAAGCCCAGCGGTACTATGAGAATTGCAGCAGGCA
CATATGAAGGTTTCTGTTACGGGTGGGAAACTGCCCTTGAACCCGGTAAG
CCCAGCGGTACTCTGTCGCTGGCTTTCGGATACAACGTTCATGTGGGATG
CTTGAAGTCGGTGGCTATGGCGACCTCGGGTACCCGCGCGGGTCGACTAC
TGGTGACAGGTGGCGCCGATGAACGTGTGCGAATATACGACATGAAAGAT
CGGACTGAGCTGGGTGAACTCCAGCAGCACAACGGTGAGATCATATCTAT
GTGACTGTCGCTGGCTTTCGGATACAACGTTCATGTGGGATGCTTGAAGT
CGGTGGCTATGGCGACCTCGGGTACCCGCGCGGGTCGACTACTGGTGACA
GGTGGCGCCGATGAACGTGTGCGAATATACGACATGAAAGATCGGACTGA
GCTGGGTGAACTCCAGCAGCACAACGGTGAGATCATATCTATGTGA
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