mRNA_H-paniculata_contig33833.9041.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig33833.9041.1
Unique NamemRNA_H-paniculata_contig33833.9041.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig33833.9041.1 vs. uniprot
Match: D8LI40_ECTSI (A to I editase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI40_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 8.560e-6
Identity = 30/49 (61.22%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:  379 RSYGLLKRANSEYWDRRKTLLSTPTFRSWLVGRKDKQEFGVNEEGLVVL 525
            RSY  LK+A+  Y  RR+ +LSTPTFR+WLVG KDKQ F V+E   VVL
Sbjct:  657 RSYWRLKQASRAYRVRREAMLSTPTFRAWLVGGKDKQRFAVDERTGVVL 705
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig33833.9041.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LI40_ECTSI8.560e-661.22A to I editase domain-containing protein n=2 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig33833contigH-paniculata_contig33833:420..1186 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.3
Seed ortholog evalue6.6e-08
Seed eggNOG ortholog2880.D8LI40
KEGG rclassRC00477
KEGG koko:K12968,ko:K15440
KEGG ReactionR10231
KEGG Pathwayko04623,ko05162,ko05164,map04623,map05162,map05164
Hectar predicted targeting categoryother localisation
EggNOG free text desc.adenosine deaminase activity
EggNOG OGsKOG2777@1,KOG2777@2759
EC3.5.4.34,3.5.4.37
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03016,ko03041
Exons1
Model size767
Cds size540
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930043.1549454-CDS-H-paniculata_contig33833:419..9591622930043.1549454-CDS-H-paniculata_contig33833:419..959Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33833 420..959 +
1691481123.2948723-CDS-H-paniculata_contig33833:419..9591691481123.2948723-CDS-H-paniculata_contig33833:419..959Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33833 420..959 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930043.171151-UTR-H-paniculata_contig33833:959..11861622930043.171151-UTR-H-paniculata_contig33833:959..1186Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig33833 960..1186 +
1691481123.3049207-UTR-H-paniculata_contig33833:959..11861691481123.3049207-UTR-H-paniculata_contig33833:959..1186Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig33833 960..1186 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig33833.9041.1prot_H-paniculata_contig33833.9041.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig33833 420..959 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig33833.9041.1

>prot_H-paniculata_contig33833.9041.1 ID=prot_H-paniculata_contig33833.9041.1|Name=mRNA_H-paniculata_contig33833.9041.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=180bp
RSRLSRARLLEVAEEVTRLYLPQAPPRGDGVEEDRTLWKSIEKQKDAAND
PAGRDCRQHFRRETGSHCPPRQASPDSSVQRHGAKIVLQQAKGDDRDEGI
DVRGRIGPVAHHKNGGGNDSSPGKRQRSYGLLKRANSEYWDRRKTLLSTP
TFRSWLVGRKDKQEFGVNEEGLVVLQPVS*
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mRNA from alignment at H-paniculata_contig33833:420..1186+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig33833.9041.1 ID=mRNA_H-paniculata_contig33833.9041.1|Name=mRNA_H-paniculata_contig33833.9041.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=767bp|location=Sequence derived from alignment at H-paniculata_contig33833:420..1186+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTCACGCCTGAGCCGTGCTCGTTTGCTGGAGGTGGCCGAAGAGGTCAC
CAGGTTGTACCTACCGCAGGCGCCACCTAGAGGCGACGGTGTGGAGGAGG
ATAGAACTTTGTGGAAATCTATTGAGAAGCAGAAGGATGCCGCGAACGAT
CCTGCTGGCCGCGACTGCCGGCAACATTTCCGGCGTGAGACTGGAAGCCA
TTGCCCTCCACGACAGGCTTCTCCGGACTCAAGCGTGCAAAGGCACGGTG
CAAAGATCGTTTTGCAACAAGCTAAAGGTGACGATAGAGACGAAGGCATA
GACGTCAGGGGAAGGATAGGGCCGGTGGCGCACCATAAAAATGGCGGCGG
GAATGACAGTAGTCCAGGGAAAAGACAGCGATCGTATGGGCTACTGAAGA
GGGCCAACAGTGAGTACTGGGATAGACGAAAAACATTGCTGTCGACACCG
ACGTTCAGGTCGTGGCTAGTGGGGCGCAAAGATAAGCAGGAATTCGGCGT
AAATGAGGAAGGGCTTGTCGTACTCCAGCCAGTTTCTTAGTTGTAATTCA
CGTTTCCTGCATTGATTTTTTGGCTAATCAGCGTTGGGGCTCTTGTGTGC
AATTTCAATTTCGAGTACTCCTCGTCGTGATGAACAAAATTTCGTCGTTT
TGTATCGAAAACCCACCGAGCGGTTGCACTGGCCGTTGCCAGGGCAGAGG
AGATTTTGAGGCTCACTTTGCGCCAATCCATAAGACATCCGGCCTAAGAC
ATGGGGCTCAAATGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig33833:420..1186+

>mRNA_H-paniculata_contig33833.9041.1 ID=mRNA_H-paniculata_contig33833.9041.1|Name=mRNA_H-paniculata_contig33833.9041.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1080bp|location=Sequence derived from alignment at H-paniculata_contig33833:420..1186+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTCACGCCTGAGCCGTGCTCGTTTGCTGGAGGTGGCCGAAGAGGTCAC
CAGGTTGTACCTACCGCAGGCGCCACCTAGAGGCGACGGTGTGGAGGAGG
ATAGAACTTTGTGGAAATCTATTGAGAAGCAGAAGGATGCCGCGAACGAT
CCTGCTGGCCGCGACTGCCGGCAACATTTCCGGCGTGAGACTGGAAGCCA
TTGCCCTCCACGACAGGCTTCTCCGGACTCAAGCGTGCAAAGGCACGGTG
CAAAGATCGTTTTGCAACAAGCTAAAGGTGACGATAGAGACGAAGGCATA
GACGTCAGGGGAAGGATAGGGCCGGTGGCGCACCATAAAAATGGCGGCGG
GAATGACAGTAGTCCAGGGAAAAGACAGCGATCGTATGGGCTACTGAAGA
GGGCCAACAGTGAGTACTGGGATAGACGAAAAACATTGCTGTCGACACCG
ACGTTCAGGTCGTGGCTAGTGGGGCGCAAAGATAAGCAGGAATTCGGCGT
AAATGAGGAAGGGCTTGTCGTACTCCAGCCAGTTTCTTAGAGGTCACGCC
TGAGCCGTGCTCGTTTGCTGGAGGTGGCCGAAGAGGTCACCAGGTTGTAC
CTACCGCAGGCGCCACCTAGAGGCGACGGTGTGGAGGAGGATAGAACTTT
GTGGAAATCTATTGAGAAGCAGAAGGATGCCGCGAACGATCCTGCTGGCC
GCGACTGCCGGCAACATTTCCGGCGTGAGACTGGAAGCCATTGCCCTCCA
CGACAGGCTTCTCCGGACTCAAGCGTGCAAAGGCACGGTGCAAAGATCGT
TTTGCAACAAGCTAAAGGTGACGATAGAGACGAAGGCATAGACGTCAGGG
GAAGGATAGGGCCGGTGGCGCACCATAAAAATGGCGGCGGGAATGACAGT
AGTCCAGGGAAAAGACAGCGATCGTATGGGCTACTGAAGAGGGCCAACAG
TGAGTACTGGGATAGACGAAAAACATTGCTGTCGACACCGACGTTCAGGT
CGTGGCTAGTGGGGCGCAAAGATAAGCAGGAATTCGGCGTAAATGAGGAA
GGGCTTGTCGTACTCCAGCCAGTTTCTTAG
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