mRNA_H-paniculata_contig33772.9026.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig33772.9026.1
Unique NamemRNA_H-paniculata_contig33772.9026.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig33772.9026.1 vs. uniprot
Match: D8LJN0_ECTSI (Serine/Threonine Dehydratase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJN0_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 7.200e-32
Identity = 55/74 (74.32%), Postives = 63/74 (85.14%), Query Frame = 1
Query:    1 IRAAYKRIQPHVHRTPVLTCSALDELAGGRKLYFKCELFQKTGSFKARGACNAVLLTSPDCADVVTQSSGNHGQ 222
            IR A  RI PHVH TPV+TC ALDE++GGR+++ KCELFQKTGSFKARGACNAVLLT P+C D+VT SSGNH Q
Sbjct:   20 IRQAAARIGPHVHYTPVMTCRALDEMSGGREVFLKCELFQKTGSFKARGACNAVLLTPPECRDIVTHSSGNHAQ 93          
BLAST of mRNA_H-paniculata_contig33772.9026.1 vs. uniprot
Match: A0A835Z2N3_9STRA (Serine/Threonine dehydratase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2N3_9STRA)

HSP 1 Score: 114 bits (284), Expect = 4.970e-28
Identity = 54/75 (72.00%), Postives = 62/75 (82.67%), Query Frame = 1
Query:    1 IRAAYKRIQPHVHRTPVLTCSALDELAG-GRKLYFKCELFQKTGSFKARGACNAVLLTSPDCADVVTQSSGNHGQ 222
            I+AA +RI+P+VHRTPV+TC  +D+LAG GR+L FKCELFQKTGSFKARGACNA LL  P C  VVT SSGNH Q
Sbjct:  112 IQAAARRIEPYVHRTPVMTCEGIDKLAGHGRQLIFKCELFQKTGSFKARGACNATLLLPPSCRAVVTHSSGNHAQ 186          
BLAST of mRNA_H-paniculata_contig33772.9026.1 vs. uniprot
Match: D7FHM2_ECTSI (Serine Racemase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHM2_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 3.480e-27
Identity = 53/74 (71.62%), Postives = 60/74 (81.08%), Query Frame = 1
Query:    1 IRAAYKRIQPHVHRTPVLTCSALDELAGGRKLYFKCELFQKTGSFKARGACNAVLLTSPDCADVVTQSSGNHGQ 222
            IR A  RI PH   TPVLTC AL+E++G R+++FKCELFQKTGSFKARGACNAVLLT P+C  VVT SSGNH Q
Sbjct:   42 IREAADRISPHTQITPVLTCGALNEMSG-REVFFKCELFQKTGSFKARGACNAVLLTPPECPGVVTHSSGNHAQ 114          
BLAST of mRNA_H-paniculata_contig33772.9026.1 vs. uniprot
Match: A0A6A4WID8_AMPAM (L-serine ammonia-lyase n=1 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4WID8_AMPAM)

HSP 1 Score: 99.8 bits (247), Expect = 1.220e-24
Identity = 51/77 (66.23%), Postives = 56/77 (72.73%), Query Frame = 1
Query:    1 IRAAYKRIQPHVHRTPVLTCSALDELAGGRKLYFKCELFQKTGSFKARGACNAVLLTS---PDCADVVTQSSGNHGQ 222
            +RAA  RIQPHVHRTPV+TC  LD L G R+L+FK E  QKTGSFKARGACNAV       PD   +VT SSGNHGQ
Sbjct:    9 VRAAQLRIQPHVHRTPVITCRHLDRLTG-RQLFFKAENLQKTGSFKARGACNAVFAIKERRPDVPGIVTHSSGNHGQ 84          
BLAST of mRNA_H-paniculata_contig33772.9026.1 vs. uniprot
Match: A0A2W5HHB5_9RHOO (Serine dehydratase n=2 Tax=Proteobacteria TaxID=1224 RepID=A0A2W5HHB5_9RHOO)

HSP 1 Score: 101 bits (251), Expect = 3.670e-24
Identity = 53/74 (71.62%), Postives = 58/74 (78.38%), Query Frame = 1
Query:    1 IRAAYKRIQPHVHRTPVLTCSALDELAGGRKLYFKCELFQKTGSFKARGACNAVLLTSPDCA--DVVTQSSGNH 216
            IR A+ RI+PHVHRTPVLTCSALD LAG R L+FKCE FQK G+FKARGACNAV   + D A   VVT SSGNH
Sbjct:   10 IREAHARIRPHVHRTPVLTCSALDRLAGAR-LFFKCENFQKVGAFKARGACNAVFSLADDEALNGVVTHSSGNH 82          
BLAST of mRNA_H-paniculata_contig33772.9026.1 vs. uniprot
Match: UPI001C92022E (beta-hydroxyaspartate dehydratase-like n=2 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=UPI001C92022E)

HSP 1 Score: 99.8 bits (247), Expect = 2.290e-23
Identity = 51/77 (66.23%), Postives = 56/77 (72.73%), Query Frame = 1
Query:    1 IRAAYKRIQPHVHRTPVLTCSALDELAGGRKLYFKCELFQKTGSFKARGACNAVLLTS---PDCADVVTQSSGNHGQ 222
            +RAA  RIQPHVHRTPV+TC  LD L G R+L+FK E  QKTGSFKARGACNAV       PD   +VT SSGNHGQ
Sbjct:    9 VRAAQLRIQPHVHRTPVITCRHLDRLTG-RQLFFKAENLQKTGSFKARGACNAVFAIKERRPDVPGIVTHSSGNHGQ 84          
BLAST of mRNA_H-paniculata_contig33772.9026.1 vs. uniprot
Match: A0A0U5A554_PENMO (L-serine ammonia-lyase n=2 Tax=Penaeus monodon TaxID=6687 RepID=A0A0U5A554_PENMO)

HSP 1 Score: 97.4 bits (241), Expect = 1.340e-22
Identity = 49/77 (63.64%), Postives = 58/77 (75.32%), Query Frame = 1
Query:    1 IRAAYKRIQPHVHRTPVLTCSALDELAGGRKLYFKCELFQKTGSFKARGACNAVLLT---SPDCADVVTQSSGNHGQ 222
            +RAA +RI   VHRTPV TC ALD++AG R+LYFK E  QKTG+FKARGACNAV L    +P+C  +VT SSGNH Q
Sbjct:   14 VRAASQRIHGWVHRTPVFTCQALDDMAG-RELYFKAENLQKTGAFKARGACNAVFLEKERNPNCVGIVTDSSGNHAQ 89          
BLAST of mRNA_H-paniculata_contig33772.9026.1 vs. uniprot
Match: A0A821BW80_9NEOB (L-serine ammonia-lyase n=1 Tax=Ranitomeya imitator TaxID=111125 RepID=A0A821BW80_9NEOB)

HSP 1 Score: 94.4 bits (233), Expect = 1.710e-22
Identity = 50/75 (66.67%), Postives = 56/75 (74.67%), Query Frame = 1
Query:    1 IRAAYKRIQPHVHRTPVLTCSALDELAGGRKLYFKCELFQKTGSFKARGACNAVL-LTSPDCADVVTQSSGNHGQ 222
            ++ A +RIQ  VH TPV+TCS+LD LA  RKL+FKCEL QKTGSFK RGA NAV  L S  C  VVT SSGNHGQ
Sbjct:   12 VQEAQRRIQGFVHSTPVMTCSSLDALAA-RKLFFKCELLQKTGSFKIRGAINAVKSLPSDKCTAVVTHSSGNHGQ 85          
BLAST of mRNA_H-paniculata_contig33772.9026.1 vs. uniprot
Match: A8J977_CHLRE (Serine/threonine dehydratase n=3 Tax=Chlamydomonas TaxID=3052 RepID=A8J977_CHLRE)

HSP 1 Score: 96.3 bits (238), Expect = 3.950e-22
Identity = 49/74 (66.22%), Postives = 58/74 (78.38%), Query Frame = 1
Query:    1 IRAAYKRIQPHVHRTPVLTCSALDELAGGRKLYFKCELFQKTGSFKARGACNAVLLTSPDCAD--VVTQSSGNH 216
            I+AA KRI P  H T V TCSAL+ELAGGR+L+FKCE+FQ+TG+FK RGACN+V L S + A   VVT SSGNH
Sbjct:   13 IQAAQKRIAPFAHVTSVQTCSALNELAGGRQLFFKCEIFQRTGAFKFRGACNSVQLLSDEEAKKGVVTHSSGNH 86          
BLAST of mRNA_H-paniculata_contig33772.9026.1 vs. uniprot
Match: A0A850AGI9_9BACT (Pyridoxal-phosphate dependent enzyme n=1 Tax=Calditrichaceae bacterium TaxID=2614252 RepID=A0A850AGI9_9BACT)

HSP 1 Score: 95.9 bits (237), Expect = 4.070e-22
Identity = 49/76 (64.47%), Postives = 57/76 (75.00%), Query Frame = 1
Query:    1 IRAAYKRIQPHVHRTPVLTCSALDELAGGRKLYFKCELFQKTGSFKARGACNAVLLTSPDCA--DVVTQSSGNHGQ 222
            IRAA +RI+P+ HRTP LTC+ALD LAG R L+FKCE FQK G+FK RGACN V+  SP+ A   V T SSGNH Q
Sbjct:   10 IRAAAERIRPYAHRTPALTCAALDRLAGAR-LFFKCENFQKVGAFKFRGACNTVMSLSPEEAARGVATHSSGNHAQ 84          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig33772.9026.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJN0_ECTSI7.200e-3274.32Serine/Threonine Dehydratase n=2 Tax=Ectocarpus Ta... [more]
A0A835Z2N3_9STRA4.970e-2872.00Serine/Threonine dehydratase n=1 Tax=Tribonema min... [more]
D7FHM2_ECTSI3.480e-2771.62Serine Racemase n=2 Tax=Ectocarpus TaxID=2879 RepI... [more]
A0A6A4WID8_AMPAM1.220e-2466.23L-serine ammonia-lyase n=1 Tax=Amphibalanus amphit... [more]
A0A2W5HHB5_9RHOO3.670e-2471.62Serine dehydratase n=2 Tax=Proteobacteria TaxID=12... [more]
UPI001C92022E2.290e-2366.23beta-hydroxyaspartate dehydratase-like n=2 Tax=Amp... [more]
A0A0U5A554_PENMO1.340e-2263.64L-serine ammonia-lyase n=2 Tax=Penaeus monodon Tax... [more]
A0A821BW80_9NEOB1.710e-2266.67L-serine ammonia-lyase n=1 Tax=Ranitomeya imitator... [more]
A8J977_CHLRE3.950e-2266.22Serine/threonine dehydratase n=3 Tax=Chlamydomonas... [more]
A0A850AGI9_9BACT4.070e-2264.47Pyridoxal-phosphate dependent enzyme n=1 Tax=Caldi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig33772contigH-paniculata_contig33772:1318..1539 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score122.1
Seed ortholog evalue1.1e-25
Seed eggNOG ortholog2880.D8LJN0
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.serine racemase
EggNOG OGsCOG1171@1,KOG1251@2759
Ec32 ortholog descriptionSerine/Threonine Dehydratase
Ec32 orthologEc-17_002680.1
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size222
Cds size222
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930041.617564-CDS-H-paniculata_contig33772:1317..15391622930041.617564-CDS-H-paniculata_contig33772:1317..1539Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33772 1318..1539 -
1691481122.5462072-CDS-H-paniculata_contig33772:1317..15391691481122.5462072-CDS-H-paniculata_contig33772:1317..1539Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33772 1318..1539 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig33772.9026.1prot_H-paniculata_contig33772.9026.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig33772 1318..1539 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig33772.9026.1

>prot_H-paniculata_contig33772.9026.1 ID=prot_H-paniculata_contig33772.9026.1|Name=mRNA_H-paniculata_contig33772.9026.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=74bp
IRAAYKRIQPHVHRTPVLTCSALDELAGGRKLYFKCELFQKTGSFKARGA
CNAVLLTSPDCADVVTQSSGNHGQ
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mRNA from alignment at H-paniculata_contig33772:1318..1539-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig33772.9026.1 ID=mRNA_H-paniculata_contig33772.9026.1|Name=mRNA_H-paniculata_contig33772.9026.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=222bp|location=Sequence derived from alignment at H-paniculata_contig33772:1318..1539- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCCGCGCCGCGTACAAGCGTATACAACCGCACGTGCATCGAACCCCGGT ACTGACATGCTCGGCATTGGATGAGCTTGCCGGCGGCAGAAAGCTGTATT TCAAATGCGAGCTGTTCCAGAAAACTGGATCTTTCAAGGCCAGAGGCGCG TGCAACGCTGTGCTACTGACCTCGCCAGATTGTGCTGATGTGGTGACGCA GTCCAGTGGCAACCACGGCCAG
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Coding sequence (CDS) from alignment at H-paniculata_contig33772:1318..1539-

>mRNA_H-paniculata_contig33772.9026.1 ID=mRNA_H-paniculata_contig33772.9026.1|Name=mRNA_H-paniculata_contig33772.9026.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at H-paniculata_contig33772:1318..1539- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCCGCGCCGCGTACAAGCGTATACAACCGCACGTGCATCGAACCCCGGT
ACTGACATGCTCGGCATTGGATGAGCTTGCCGGCGGCAGAAAGCTGTATT
TCAAATGCGAGCTGTTCCAGAAAACTGGATCTTTCAAGGCCAGAGGCGCG
TGCAACGCTGTGCTACTGACCTCGCCAGATTGTGCTGATGTGGTGACGCA
GTCCAGTGGCAACCACGGCCAGATCCGCGCCGCGTACAAGCGTATACAAC
CGCACGTGCATCGAACCCCGGTACTGACATGCTCGGCATTGGATGAGCTT
GCCGGCGGCAGAAAGCTGTATTTCAAATGCGAGCTGTTCCAGAAAACTGG
ATCTTTCAAGGCCAGAGGCGCGTGCAACGCTGTGCTACTGACCTCGCCAG
ATTGTGCTGATGTGGTGACGCAGTCCAGTGGCAACCACGGCCAG
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