|
|
Homology
BLAST of mRNA_H-paniculata_contig3373.9015.1 vs. uniprot
Match: A0A6H5K364_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K364_9PHAE) HSP 1 Score: 129 bits (325), Expect = 2.670e-28 Identity = 71/110 (64.55%), Postives = 82/110 (74.55%), Query Frame = 1
Query: 1408 DGLSARENALMRDNTRRIT------PTLIKRPPGGPFGASKARAWHAQQVVQSAVTPMQAMRAVLDRPLRSNYVTVSTAINRVAKLSAERSPPG-LRGEQERQHLGVLLK 1716
+ L N R RR P L +RPPGGPFGASKA AWHAQQVVQSAVTP+QAMRAVLDRPLRSNYV+VSTA+NRVAKL+A R G L+GE+E ++LG+LLK
Sbjct: 203 ESLREEANQGRRGGARRAVRGRVSPPPLKRRPPGGPFGASKAVAWHAQQVVQSAVTPLQAMRAVLDRPLRSNYVSVSTALNRVAKLAASRRRGGGLKGEEEPKYLGILLK 312
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | signal anchor |
| Exons | 4 |
| Model size | 1716 |
| Cds size | 1641 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3373.9015.1 >prot_H-paniculata_contig3373.9015.1 ID=prot_H-paniculata_contig3373.9015.1|Name=mRNA_H-paniculata_contig3373.9015.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=547bp
MVCHQQPPSQNCCELITMGRIRIMYVVVVMVCLLVSLGLPSGHAALAGGA SIPWRTGAEVLRLSRPSTATPSGFACHRTCSISRGGSRERSANKPRTCPI GGGGGDGSSCFRFREHRGGGRACTFVRGEGGSGVGSQGSDRRQSERVPTP TFQQETPRSRFRVPGDGNIPLEAAGKLQEAPSTNADYTVIAANPASTAIR TPNEIATTSRAKVGVTARGKTSRDPAYKDNGTSDGFIEDVSSLARSTNPL QSESDMLDNDTSQWNSLLQKRLLQKLSKPGRKARGASPSHSSTPAAAATA AAARERKLPSPGLTADEIVPATTSDAVVGEANEKVSSSNGNICFTSPAIN IAASASAATADHTEEIHQRYSDICATEKAGKKKRKRRSETDTVSVQRKSP RNDVASSREDETALSRDSLRGSNTDPERTALERGKKHGDACSGSDGLSAR ENALMRDNTRRITPTLIKRPPGGPFGASKARAWHAQQVVQSAVTPMQAMR AVLDRPLRSNYVTVSTAINRVAKLSAERSPPGLRGEQERQHLGVLLK back to topmRNA from alignment at H-paniculata_contig3373:12766..16849+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig3373.9015.1 ID=mRNA_H-paniculata_contig3373.9015.1|Name=mRNA_H-paniculata_contig3373.9015.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4084bp|location=Sequence derived from alignment at H-paniculata_contig3373:12766..16849+ (Halopteris paniculata Hal_grac_a_UBK monoicous) GCACGAATCCGGCACGGTGCGGCCGGGCACGGACTAATGCTCGACTTTGC
GAAGAATTAGGTTCAGAAGGATGTGATGGTGTGTCACCAGCAACCACCGT
CGCAGAATTGCTGTGAATTAATCACAATGGGTCGTATAAGGATCATGTAC
GTTGTTGTTGTGATGGTTTGCCTGTTGGTGTCCTTGGGCTTGCCTTCGGG
GCATGCTGCTTTGGCGGGTGGAGCTAGCATCCCATGGCGAACAGGTGTGT
TGACGGTGTTATGCTCATGTTGCAGGAATTACCAAGGTTGTGATGTATTG
ATCTTAGAGGTTCACCAGCGAGTTCAGTAAACGCGATGATCGCACAGCAC
AGCACAGCAGACATGTATGACATCGGTGTCATGTTTCCGCCGCATCACTT
CGTTCAAACAGTTGATTGGGTCCCTCCTGCTAGTCATGTTTTCAAGTTAC
AAACTGTACTGTAGTCATTTACCCTGTAGATATGGAGGGGTGCCACTCTT
TTCAGACGTGATTATCTCGAGACCTACGGCGCTACTGACAACGAATATTG
TGCCATTGGGAAACTATGGCTGAGATCTGTCGATTGATGGATTTTCTCGA
CCGCGTAGGGTGTCCGTTCTCGAGACGGTCGCCTTTGAAAAACATGCACC
CCCATACAGGTTTCACGGGTAATGGCATAGCCTGGCGAATATATAAGTAC
ATGACAGGAGAAACAAACAGCAAAAGCGTTGACCATTGCGCAGCCCTTCG
TCCTCTGTCACGCCTTTTTTTCCAGTAGCTTGCGCCGCTGCAGCTGTATT
TAGCAAAGGTATGTATGCTGAGGTCCCCATTTCAGTAGATATGGAACCTC
AGACTAGCCTACACTACTGCGGAGCACGGACGAAACATGAGCAGGCAAAA
CTACTAGTTCCTCCGCATATCGAAAACTGTAAATAGCGCAAAAACAAGGT
TTTGCCGCGAGCTCTTCAACATATTGAACACCTTCTTCGCTCAACTATCC
ACTCCGAGTAATCTATATTTCCCGCAGATAAAAATGCTAGAACTCTCGAG
CTCTATTTATCTGCAACAGGTAGGTACAAATCAAGTGTCGCTAGCAGCGG
CCGTGCCCTGCCCACCAGATACCGTCAGTACAAATTTTGTCGCATTTCTC
TGGCAACGATCATTCCCGCGTCGGGCATATGAGATCGTAGCTCATAAGGA
TAACTTGCACAGATATGTCGTCACGATGCGTACCATCTCTTTCCATTCGT
ACGTTGTACAGCCAGGCTTACGCACCGCACCGTATACTTGCTTTGTCCTC
GTGCACATTTAGTCATCATGCAGAACCAGGACCCGCGCACAACAGCTCGC
GGCGCTTGCGTTGTGACTCACTACGCTCTCATGTAGGCTCAATGTCCGTA
AAAAATTGTTTAAAAAACTACTCGAGTATAGAGTTCCGAAACCACCACTA
CCACCATCATCGTCATCATCATCATTGTCAGCACCATCGCCTGAACGTTA
TAAATAACAAGGATACATCTTGTCCGAAGTTGAACCGTAGGAAGCCCGTC
TGCACGAATATTGATCTCTTCGGCGTGTTAGATGTCCACCACTCTGTCAC
CGCTGACAGCCCAACAATCGCCCTAAAGTTACACTCCCTGCACTCCTTCC
TCCCGCTGTGCACAGGGGCCGAGGTGCTCCGATTATCAAGACCATCTACG
GCCACGCCATCGGGCTTCGCCTGCCACCGAACCTGTTCGATCTCTCGCGG
GGGATCAAGAGAGAGGTCTGCTAATAAGCCAAGAACCTGTCCCATTGGTG
GCGGCGGTGGTGATGGGAGCAGTTGTTTTCGTTTTAGGGAGCACAGAGGC
GGTGGCAGAGCTTGCACTTTCGTGCGTGGAGAGGGTGGTAGTGGCGTGGG
AAGCCAGGGATCTGACAGGCGACAGAGCGAACGGGTGCCAACGGTGGGTG
ACGAGGTTGGATAGTGACTGTATACAGTAAAGCTCAATCGTTGATGCAGA
AGTTCTCCGCTTACGCAAACCGATTTCGTCGAAGAAACAGAATCGGGAAA
GTGTAGTTTCTCTCGCATAGCACAGTACGGCATAGCATATCATAGCTCTC
TCCCCTCGTTCATTCGGTCCATGTTGTCGAAAAAAGAAAATCAAATACTA
ACCGAAGAAAAGCCGACGGCGACGACAACAACAACATCCAACAAACAACA
ACAACGCTTCCCCGGCCTCGATCCCCTCCTAAGCCAACCTTTCAACAGGA
AACACCACGGTCTCGATTTCGCGTCCCCGGCGACGGGAACATCCCGTTAG
AGGCTGCGGGAAAATTGCAGGAAGCACCCTCAACAAACGCGGACTACACA
GTTATTGCAGCTAACCCAGCAAGCACGGCTATTAGGACACCGAATGAGAT
AGCAACTACATCGCGTGCAAAAGTAGGAGTGACCGCGCGAGGAAAGACCT
CGCGAGACCCCGCATACAAGGACAATGGCACTAGTGATGGTTTCATTGAG
GATGTTTCAAGTCTCGCGCGAAGTACGAATCCTCTGCAGTCTGAGAGTGA
TATGCTGGATAATGACACCAGTCAGTGGAATTCCCTCCTGCAAAAACGCC
TGCTGCAGAAGCTCAGCAAACCCGGGAGGAAGGCAAGAGGTGCATCTCCA
TCACACTCATCGACACCAGCAGCAGCGGCCACAGCGGCGGCGGCGCGGGA
AAGGAAATTGCCATCACCAGGGCTGACAGCCGACGAAATTGTGCCAGCAA
CGACGAGCGATGCTGTCGTCGGAGAAGCTAACGAAAAAGTTTCATCATCA
AACGGTAACATATGCTTTACTTCGCCGGCAATCAACATTGCCGCCTCCGC
CTCCGCCGCCACTGCAGATCATACAGAAGAAATTCATCAACGATATTCAG
ATATCTGTGCCACGGAAAAGGCCGGGAAAAAAAAACGCAAGCGACGCAGC
GAGACAGACACCGTTTCGGTCCAACGAAAGTCTCCCCGCAACGATGTAGC
GTCGTCGCGGGAGGACGAAACGGCGTTGAGCAGAGACAGTCTGCGGGGCA
GCAACACTGACCCCGAGAGGACGGCACTGGAACGCGGGAAGAAACATGGT
GATGCTTGTTCGGGGAGTGATGGGTTGTCTGCACGGGAGAATGCGTTGAT
GCGTGATAATACGCGACGAATTACCCCGACGTTGATTAAGCGACCCCCCG
GCGGCCCGTTTGGCGCCAGCAAAGCGCGAGCGTGGCATGCGCAGCAGGTG
GTGCAGTCTGCGGTAACGCCAATGCAGGTGAGTGAAGAAGCAGAGAGGTA
TTGGAATAGTTTCGTCTATATTTTCTAGAGCTGGAAAGACAGCATCACCC
GCTTTTGTTTGGTTTGTTCCTTGCCTTGCTCGTGTTGCGCAGGTGGTTTT
TGTCTCTTTTTTTGTTTGATTTTGCGTGTGCAGTAGAGTAACCAGGATTA
TTGGGGGTCTTGACTGATCCGCGTACTACGGTCGCGTAGCCTACTAGTGG
CGGTGGGCTGATTGAAGGGATACCTCGGTAATAAGAGTCATTGTCAGATT
TTGATGTTAAGAGTGCAATCAACTTATCAATATGTGTACACCGCTTTGAG
GTTTCAACTGCACCCAATTTACTTCAGAGGATTTTGTCTTCTGAGCTGGT
TAAGATATTAACGTTTTGTTATTGGGCAAAAAACCTGATTTTTCCCCTAG
TTACGGGTTCCGCGACGATAGCTTTGTTCCCGCACCCCACCCCCCCTTCC
CTCTCACTTTGTGGGGGGCTGTTTGTGTGCGATCAGCCAGGTGCTTGCAA
TGTTACCGTAGCTCGACAGGGTTGTGCCTATCACCCCTTTCAACAAAGCA
CAAAAAGAATCCTAGCTTCGCTACCTTGGACAGAAACGTTTTTTGAGAGT
GATCATTTTTATTCTTTTTGTTCATGCAATCCAGGCCATGCGTGCGGTGT
TGGACCGGCCTCTGCGGAGCAACTACGTCACCGTGTCCACGGCCATCAAC
AGGGTAGCTAAGCTGTCGGCGGAGAGATCGCCCCCAGGGCTTCGAGGGGA
ACAAGAGCGGCAACATCTAGGTGTTTTGCTCAAG back to topCoding sequence (CDS) from alignment at H-paniculata_contig3373:12766..16849+ >mRNA_H-paniculata_contig3373.9015.1 ID=mRNA_H-paniculata_contig3373.9015.1|Name=mRNA_H-paniculata_contig3373.9015.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3282bp|location=Sequence derived from alignment at H-paniculata_contig3373:12766..16849+ (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGGTGTGTCACCAGCAACCACCGTCGCAGAATTGCTGTGAATTAATCAC AATGGGTCGTATAAGGATCATGTACGTTGTTGTTGTGATGGTTTGCCTGT TGGTGTCCTTGGGCTTGCCTTCGGGGCATGCTGCTTTGGCGGGTGGAGCT AGCATCCCATGGCGAACAGATGGTGTGTCACCAGCAACCACCGTCGCAGA ATTGCTGTGAATTAATCACAATGGGTCGTATAAGGATCATGTACGTTGTT GTTGTGATGGTTTGCCTGTTGGTGTCCTTGGGCTTGCCTTCGGGGCATGC TGCTTTGGCGGGTGGAGCTAGCATCCCATGGCGAACAGGGGCCGAGGTGC TCCGATTATCAAGACCATCTACGGCCACGCCATCGGGCTTCGCCTGCCAC CGAACCTGTTCGATCTCTCGCGGGGGATCAAGAGAGAGGTCTGCTAATAA GCCAAGAACCTGTCCCATTGGTGGCGGCGGTGGTGATGGGAGCAGTTGTT TTCGTTTTAGGGAGCACAGAGGCGGTGGCAGAGCTTGCACTTTCGTGCGT GGAGAGGGTGGTAGTGGCGTGGGAAGCCAGGGATCTGACAGGCGACAGAG CGAACGGGTGCCAACGGGGCCGAGGTGCTCCGATTATCAAGACCATCTAC GGCCACGCCATCGGGCTTCGCCTGCCACCGAACCTGTTCGATCTCTCGCG GGGGATCAAGAGAGAGGTCTGCTAATAAGCCAAGAACCTGTCCCATTGGT GGCGGCGGTGGTGATGGGAGCAGTTGTTTTCGTTTTAGGGAGCACAGAGG CGGTGGCAGAGCTTGCACTTTCGTGCGTGGAGAGGGTGGTAGTGGCGTGG GAAGCCAGGGATCTGACAGGCGACAGAGCGAACGGGTGCCAACGCCAACC TTTCAACAGGAAACACCACGGTCTCGATTTCGCGTCCCCGGCGACGGGAA CATCCCGTTAGAGGCTGCGGGAAAATTGCAGGAAGCACCCTCAACAAACG CGGACTACACAGTTATTGCAGCTAACCCAGCAAGCACGGCTATTAGGACA CCGAATGAGATAGCAACTACATCGCGTGCAAAAGTAGGAGTGACCGCGCG AGGAAAGACCTCGCGAGACCCCGCATACAAGGACAATGGCACTAGTGATG GTTTCATTGAGGATGTTTCAAGTCTCGCGCGAAGTACGAATCCTCTGCAG TCTGAGAGTGATATGCTGGATAATGACACCAGTCAGTGGAATTCCCTCCT GCAAAAACGCCTGCTGCAGAAGCTCAGCAAACCCGGGAGGAAGGCAAGAG GTGCATCTCCATCACACTCATCGACACCAGCAGCAGCGGCCACAGCGGCG GCGGCGCGGGAAAGGAAATTGCCATCACCAGGGCTGACAGCCGACGAAAT TGTGCCAGCAACGACGAGCGATGCTGTCGTCGGAGAAGCTAACGAAAAAG TTTCATCATCAAACGGTAACATATGCTTTACTTCGCCGGCAATCAACATT GCCGCCTCCGCCTCCGCCGCCACTGCAGATCATACAGAAGAAATTCATCA ACGATATTCAGATATCTGTGCCACGGAAAAGGCCGGGAAAAAAAAACGCA AGCGACGCAGCGAGACAGACACCGTTTCGGTCCAACGAAAGTCTCCCCGC AACGATGTAGCGTCGTCGCGGGAGGACGAAACGGCGTTGAGCAGAGACAG TCTGCGGGGCAGCAACACTGACCCCGAGAGGACGGCACTGGAACGCGGGA AGAAACATGGTGATGCTTGTTCGGGGAGTGATGGGTTGTCTGCACGGGAG AATGCGTTGATGCGTGATAATACGCGACGAATTACCCCGACGTTGATTAA GCGACCCCCCGGCGGCCCGTTTGGCGCCAGCAAAGCGCGAGCGTGGCATG CGCAGCAGGTGGTGCAGTCTGCGGTAACGCCAATGCAGCCAACCTTTCAA CAGGAAACACCACGGTCTCGATTTCGCGTCCCCGGCGACGGGAACATCCC GTTAGAGGCTGCGGGAAAATTGCAGGAAGCACCCTCAACAAACGCGGACT ACACAGTTATTGCAGCTAACCCAGCAAGCACGGCTATTAGGACACCGAAT GAGATAGCAACTACATCGCGTGCAAAAGTAGGAGTGACCGCGCGAGGAAA GACCTCGCGAGACCCCGCATACAAGGACAATGGCACTAGTGATGGTTTCA TTGAGGATGTTTCAAGTCTCGCGCGAAGTACGAATCCTCTGCAGTCTGAG AGTGATATGCTGGATAATGACACCAGTCAGTGGAATTCCCTCCTGCAAAA ACGCCTGCTGCAGAAGCTCAGCAAACCCGGGAGGAAGGCAAGAGGTGCAT CTCCATCACACTCATCGACACCAGCAGCAGCGGCCACAGCGGCGGCGGCG CGGGAAAGGAAATTGCCATCACCAGGGCTGACAGCCGACGAAATTGTGCC AGCAACGACGAGCGATGCTGTCGTCGGAGAAGCTAACGAAAAAGTTTCAT CATCAAACGGTAACATATGCTTTACTTCGCCGGCAATCAACATTGCCGCC TCCGCCTCCGCCGCCACTGCAGATCATACAGAAGAAATTCATCAACGATA TTCAGATATCTGTGCCACGGAAAAGGCCGGGAAAAAAAAACGCAAGCGAC GCAGCGAGACAGACACCGTTTCGGTCCAACGAAAGTCTCCCCGCAACGAT GTAGCGTCGTCGCGGGAGGACGAAACGGCGTTGAGCAGAGACAGTCTGCG GGGCAGCAACACTGACCCCGAGAGGACGGCACTGGAACGCGGGAAGAAAC ATGGTGATGCTTGTTCGGGGAGTGATGGGTTGTCTGCACGGGAGAATGCG TTGATGCGTGATAATACGCGACGAATTACCCCGACGTTGATTAAGCGACC CCCCGGCGGCCCGTTTGGCGCCAGCAAAGCGCGAGCGTGGCATGCGCAGC AGGTGGTGCAGTCTGCGGTAACGCCAATGCAGGCCATGCGTGCGGTGTTG GACCGGCCTCTGCGGAGCAACTACGTCACCGTGTCCACGGCCATCAACAG GGTAGCTAAGCTGTCGGCGGAGAGATCGCCCCCAGGGCTTCGAGGGGAAC AAGAGCGGCAACATCTAGGTGTTTTGCTCAAGGCCATGCGTGCGGTGTTG GACCGGCCTCTGCGGAGCAACTACGTCACCGTGTCCACGGCCATCAACAG GGTAGCTAAGCTGTCGGCGGAGAGATCGCCCCCAGGGCTTCGAGGGGAAC AAGAGCGGCAACATCTAGGTGTTTTGCTCAAG back to top
|