mRNA_H-paniculata_contig33719.9011.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig33719.9011.1
Unique NamemRNA_H-paniculata_contig33719.9011.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig33719.9011.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig33719contigH-paniculata_contig33719:1263..1628 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size366
Cds size366
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930040.0346816-CDS-H-paniculata_contig33719:1262..16281622930040.0346816-CDS-H-paniculata_contig33719:1262..1628Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33719 1263..1628 +
1691481121.9055414-CDS-H-paniculata_contig33719:1262..16281691481121.9055414-CDS-H-paniculata_contig33719:1262..1628Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33719 1263..1628 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig33719.9011.1prot_H-paniculata_contig33719.9011.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig33719 1263..1628 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig33719.9011.1

>prot_H-paniculata_contig33719.9011.1 ID=prot_H-paniculata_contig33719.9011.1|Name=mRNA_H-paniculata_contig33719.9011.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=122bp
YRNIDLLSIEYAFRPRLRTRGRAFPGETSDFQGIGFSSMFSPLKPIISLL
LRPRTPTLTLQSITERSPTDEIIYIYLSGSANYLLQFGSFSAQDYGTSDL
LRSLQRIAGSEQTTWLFKSSHY
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mRNA from alignment at H-paniculata_contig33719:1263..1628+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig33719.9011.1 ID=mRNA_H-paniculata_contig33719.9011.1|Name=mRNA_H-paniculata_contig33719.9011.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=366bp|location=Sequence derived from alignment at H-paniculata_contig33719:1263..1628+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TATAGGAATATTGACCTATTGTCCATCGAGTACGCTTTTCGGCCTCGCCT
CAGGACCCGCGGACGAGCCTTTCCGGGGGAAACCTCGGATTTTCAGGGCA
TCGGATTCTCATCCATGTTTTCGCCACTCAAGCCGATAATCTCCCTTCTG
CTTCGTCCACGCACGCCTACGTTGACGCTTCAATCTATAACAGAACGATC
CCCTACAGATGAAATTATTTATATATATCTATCAGGTTCGGCAAATTACT
TGCTGCAGTTCGGGTCATTTTCGGCGCAGGATTACGGCACAAGTGATCTA
TTACGCAGTCTTCAAAGGATTGCTGGTTCTGAGCAAACCACCTGGTTGTT
TAAGTCTTCCCACTAC
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Coding sequence (CDS) from alignment at H-paniculata_contig33719:1263..1628+

>mRNA_H-paniculata_contig33719.9011.1 ID=mRNA_H-paniculata_contig33719.9011.1|Name=mRNA_H-paniculata_contig33719.9011.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=732bp|location=Sequence derived from alignment at H-paniculata_contig33719:1263..1628+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TATAGGAATATTGACCTATTGTCCATCGAGTACGCTTTTCGGCCTCGCCT
CAGGACCCGCGGACGAGCCTTTCCGGGGGAAACCTCGGATTTTCAGGGCA
TCGGATTCTCATCCATGTTTTCGCCACTCAAGCCGATAATCTCCCTTCTG
CTTCGTCCACGCACGCCTACGTTGACGCTTCAATCTATAACAGAACGATC
CCCTACAGATGAAATTATTTATATATATCTATCAGGTTCGGCAAATTACT
TGCTGCAGTTCGGGTCATTTTCGGCGCAGGATTACGGCACAAGTGATCTA
TTACGCAGTCTTCAAAGGATTGCTGGTTCTGAGCAAACCACCTGGTTGTT
TAAGTCTTCCCACTACTATAGGAATATTGACCTATTGTCCATCGAGTACG
CTTTTCGGCCTCGCCTCAGGACCCGCGGACGAGCCTTTCCGGGGGAAACC
TCGGATTTTCAGGGCATCGGATTCTCATCCATGTTTTCGCCACTCAAGCC
GATAATCTCCCTTCTGCTTCGTCCACGCACGCCTACGTTGACGCTTCAAT
CTATAACAGAACGATCCCCTACAGATGAAATTATTTATATATATCTATCA
GGTTCGGCAAATTACTTGCTGCAGTTCGGGTCATTTTCGGCGCAGGATTA
CGGCACAAGTGATCTATTACGCAGTCTTCAAAGGATTGCTGGTTCTGAGC
AAACCACCTGGTTGTTTAAGTCTTCCCACTAC
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