mRNA_H-paniculata_contig33709.9008.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig33709.9008.1
Unique NamemRNA_H-paniculata_contig33709.9008.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig33709.9008.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig33709contigH-paniculata_contig33709:1276..1455 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size181
Cds size141
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930039.3478396-CDS-H-paniculata_contig33709:1275..14161622930039.3478396-CDS-H-paniculata_contig33709:1275..1416Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33709 1276..1416 +
1691481121.687592-CDS-H-paniculata_contig33709:1275..14161691481121.687592-CDS-H-paniculata_contig33709:1275..1416Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33709 1276..1416 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930039.3668802-UTR-H-paniculata_contig33709:1416..14551622930039.3668802-UTR-H-paniculata_contig33709:1416..1455Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig33709 1417..1455 +
1691481121.702285-UTR-H-paniculata_contig33709:1416..14551691481121.702285-UTR-H-paniculata_contig33709:1416..1455Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig33709 1417..1455 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig33709.9008.1prot_H-paniculata_contig33709.9008.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig33709 1276..1416 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig33709.9008.1

>prot_H-paniculata_contig33709.9008.1 ID=prot_H-paniculata_contig33709.9008.1|Name=mRNA_H-paniculata_contig33709.9008.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=47bp
SGAGGSELGRARGSGGRGVAAFAARLAVETAAGYVLWELYKRVTAT*
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mRNA from alignment at H-paniculata_contig33709:1276..1455+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig33709.9008.1 ID=mRNA_H-paniculata_contig33709.9008.1|Name=mRNA_H-paniculata_contig33709.9008.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=180bp|location=Sequence derived from alignment at H-paniculata_contig33709:1276..1455+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCCGGAGCAGGAGGGAGCGAACTCGGCCGGGCGCGGGGTAGCGGGGGGCG
AGGGGTAGCAGCGTTCGCGGCAAGACTTGCTGTGGAAACTGCGGCGGGTT
ATGTGTTGTGGGAGTTGTACAAGAGAGTAACAGCGACGTGATTTGTTTTT
GGTCGGTTGGAGCCCGTTTGGTTCGTTGCA
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Coding sequence (CDS) from alignment at H-paniculata_contig33709:1276..1455+

>mRNA_H-paniculata_contig33709.9008.1 ID=mRNA_H-paniculata_contig33709.9008.1|Name=mRNA_H-paniculata_contig33709.9008.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=282bp|location=Sequence derived from alignment at H-paniculata_contig33709:1276..1455+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCCGGAGCAGGAGGGAGCGAACTCGGCCGGGCGCGGGGTAGCGGGGGGCG
AGGGGTAGCAGCGTTCGCGGCAAGACTTGCTGTGGAAACTGCGGCGGGTT
ATGTGTTGTGGGAGTTGTACAAGAGAGTAACAGCGACGTGATCCGGAGCA
GGAGGGAGCGAACTCGGCCGGGCGCGGGGTAGCGGGGGGCGAGGGGTAGC
AGCGTTCGCGGCAAGACTTGCTGTGGAAACTGCGGCGGGTTATGTGTTGT
GGGAGTTGTACAAGAGAGTAACAGCGACGTGA
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