mRNA_H-paniculata_contig33602.8997.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig33602.8997.1
Unique NamemRNA_H-paniculata_contig33602.8997.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig33602.8997.1 vs. uniprot
Match: D7G1V1_ECTSI (HSPC140 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1V1_ECTSI)

HSP 1 Score: 149 bits (377), Expect = 6.470e-42
Identity = 76/118 (64.41%), Postives = 92/118 (77.97%), Query Frame = 1 
Query:    1 QVGQNLSDPVDAVFPTLEEATAANWGSLKDRWGLPVTPFVVARGTALFHEKFGRRPLPSDAPAFAALVESSLATNTMPADYLG--GPEG---AAAICATASAEVSPVCAILGGILGQE 339
            ++GQ LSDP+D  FP++EEA+AA W SLKDRWG P  PFV A+  ALF EKFGRRPLP+D P  AA++ES+L  N +P D+LG  GP     AA++CATA+AEVSPVCAILGGILGQE
Sbjct:  189 EIGQILSDPMDMEFPSVEEASAAQWSSLKDRWGPPPKPFVTAQVVALFQEKFGRRPLPADTPECAAVIESALENNGLPPDFLGEAGPVAGGAAASLCATATAEVSPVCAILGGILGQE 306
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BLAST of mRNA_H-paniculata_contig33602.8997.1 vs. uniprot
Match: A0A836CJW8_9STRA (ThiF domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJW8_9STRA)

HSP 1 Score: 100 bits (249), Expect = 3.730e-23
Identity = 50/115 (43.48%), Postives = 71/115 (61.74%), Query Frame = 1 
Query:    1 QVGQN--LSDPVDAVFPTLEEATAANWGSLKDRWGLPVTPFVVARGTALFHEKFGRRPLPSDAPAFAALVESSLATNTMPADYLGGPEGAAAICATASAEVSPVCAILGGILGQE 339
            ++G+N  LSDP+   FP++EEA  A W +LK+RWG     + +A+    F EK GRRP  SD     ++ +  L  N +P D++   E  A +CA A  E++PVCA+LGGILGQE
Sbjct:  177 ELGENKGLSDPIPVAFPSIEEAVGAPWSTLKNRWGPVSKVYALAQLMLEFEEKHGRRPGASDGDTMTSVAQQCLKRNGLPTDFIASDE-TAVLCAQAQVEINPVCAVLGGILGQE 290
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BLAST of mRNA_H-paniculata_contig33602.8997.1 vs. uniprot
Match: A0A7S2BGT6_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BGT6_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 2.790e-14
Identity = 49/113 (43.36%), Postives = 70/113 (61.95%), Query Frame = 1 
Query:   16 LSDPVDAVFPTLEEATAANWGSLKDR-WGLPVTP-FVVARGTALFHEKFGRRPLPSDAPAFAALVESSLATN--TMPADYLGGPEGAAA-ICATASAEVSPVCAILGGILGQE 339
            L++P    +P+L+ A A  W +LK R WG PV+P FV  R  +LFHE+ GR    +D+    AL + +LAT   T  A+     E  A+ + ATA AE++PVCA++GG+LGQE
Sbjct:   48 LTEPETIEYPSLDTALAVPWDALKHRRWG-PVSPTFVRYRLLSLFHERTGRPATAADSAELFALGQETLATEGYTTAAEGTAFTEAMASHLAATAQAELAPVCAVMGGVLGQE 159
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BLAST of mRNA_H-paniculata_contig33602.8997.1 vs. uniprot
Match: A0A7S2SCB2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SCB2_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 3.070e-13
Identity = 47/118 (39.83%), Postives = 67/118 (56.78%), Query Frame = 1 
Query:    7 GQN--LSDPVDAVFPTLEEATAANWGSLKDRWGLPVTPFVVARGTALFHEKFGRRPLPSDAPAFAALVESSLATNTM----PADYLGGPEG-AAAICATASAEVSPVCAILGGILGQE 339
            G+N  LS+P    FP+L E+  A W +L DRWG     +V  R  + F E+ GR P P DA    A+ +  LA++ +    P   +   EG A+ + A A A ++PVCA+LGGI+GQE
Sbjct:   83 GENVKLSEPKLVEFPSLAESLTARWDTLGDRWGSVPRDYVNYRILSEFQERTGRLPSPEDANDVFAIGKQLLASHGVLEERPKVSVSWSEGDASRLAAIAQASIAPVCAMLGGIIGQE 200
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BLAST of mRNA_H-paniculata_contig33602.8997.1 vs. uniprot
Match: A0A7S2PNF1_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PNF1_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 1.070e-7
Identity = 42/112 (37.50%), Postives = 56/112 (50.00%), Query Frame = 1 
Query:   16 LSDPVDAVFPTLEEATAANWGSLKDRWGLPVTP-FVVARGTALFHEKFGRRPLPS--DAPAFAALVESSLATN-TMPADYLGGPEGAAAICATASAEVSPVCAILGGILGQE 339
            LSD   A +P L E  +     + DRW   V   + V R    F +       PS  +A +F A  +S L  +  +P+DYLG       +   A AEVSPVCA+LGG+LGQE
Sbjct:  207 LSDWEAASYPPLSEVLSKRLDGVSDRWNKTVPKLWAVYRAYLAFAKDDHGTLWPSAENAQSFIATTKSWLCGDQNLPSDYLGSDADLQVLATIADAEVSPVCAVLGGMLGQE 318
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BLAST of mRNA_H-paniculata_contig33602.8997.1 vs. uniprot
Match: A0A4D9DD23_9STRA (ThiF domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DD23_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 2.590e-7
Identity = 37/106 (34.91%), Postives = 59/106 (55.66%), Query Frame = 1 
Query:   37 VFPTLEEATAANWGSLKDRWGLPVTPFVVARGTALFHEKFGRRPLPSDAP-----AFAALVESSLATNTMPADYLGGPEGAAAICATASAEVSPVCAILGGILGQE 339
             +P+L +A A  W +LK R+ +P   FV+AR   L+ E+    P P +A       F +  + ++  N + A +L   E   A+   + +E+SPVCA++GGILGQE
Sbjct:  180 AYPSLSDALAVPWSALKSRFPVPRV-FVMARLLGLYEERHSG-PFPPNATEESVEVFVSESQLAMGANGLEAGFLSEEE-LRALARQSQSELSPVCAVVGGILGQE 282
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BLAST of mRNA_H-paniculata_contig33602.8997.1 vs. uniprot
Match: A0A7S2MAE5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MAE5_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 2.930e-5
Identity = 31/108 (28.70%), Postives = 46/108 (42.59%), Query Frame = 1 
Query:   16 LSDPVDAVFPTLEEATAANWGSLKDRWGLPVTPFVVARGTALFHEKFGRRPLPSDAPAFAALVESSLATNTMPADYLGGPEGAAAICATASAEVSPVCAILGGILGQE 339
            +  P    +P+L++     W +L++RWG     FV       F    GR P   D+     +    L T           E A  +      ++SPVCAILGG++GQE
Sbjct:  183 VDGPFQIEYPSLDDMLQTRWTALRNRWGPVSMVFVRYCILTQFRHTHGRTPTAQDSSQLEEIGHKIL-TEQAADGVTFNKEDAECLAGQQGVDLSPVCAILGGVIGQE 289
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BLAST of mRNA_H-paniculata_contig33602.8997.1 vs. uniprot
Match: A0A7S2UZW6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZW6_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 2.940e-5
Identity = 38/109 (34.86%), Postives = 53/109 (48.62%), Query Frame = 1 
Query:   34 AVFPTLEEATAANWGSLKDRWGLPV----TPFVVARGTALFHEKFGRRPLPSDAPAFAALVESS---LATNTMPADYLGGPEGAAAICATASAEVSPVCAILGGILGQE 339
            A +P+L++A    W  L  R    V     PFV+ +      E+ GR            LV+ S   L  N MP D+L   +    +C+ A+ E+SPVCAI+GGI GQE
Sbjct:  205 ASYPSLQDALGTKWSVLTHRRRGKVYMAPKPFVLLQVLEELEEQMGRPVKGMQEGDLNELVQISTRLLQDNEMPPDFLT-EDDLRILCSVANTEISPVCAIVGGIWGQE 312
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig33602.8997.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7G1V1_ECTSI6.470e-4264.41HSPC140 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1V1... [more]
A0A836CJW8_9STRA3.730e-2343.48ThiF domain-containing protein n=1 Tax=Tribonema m... [more]
A0A7S2BGT6_9STRA2.790e-1443.36Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2SCB2_9STRA3.070e-1339.83Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2PNF1_9STRA1.070e-737.50Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A4D9DD23_9STRA2.590e-734.91ThiF domain-containing protein n=1 Tax=Nannochloro... [more]
A0A7S2MAE5_9STRA2.930e-528.70Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2UZW6_9STRA2.940e-534.86Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig33602contigH-paniculata_contig33602:553..2332 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score150.2
Seed ortholog evalue5.7e-34
Seed eggNOG ortholog2880.D7G1V1
Preferred nameAOS1
KEGG koko:K03845,ko:K04532,ko:K10684
KEGG ReactionR06258
KEGG Pathwayko00510,ko00513,ko01100,ko04120,ko05010,map00510,map00513,map01100,map04120,map05010
KEGG ModuleM00055
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004839,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006464,GO:0006807,GO:0008022,GO:0008047,GO:0008150,GO:0008152,GO:0008641,GO:0009987,GO:0016567,GO:0016874,GO:0016877,GO:0016925,GO:0018193,GO:0018205,GO:0019538,GO:0019899,GO:0019948,GO:0030234,GO:0031510,GO:0031974,GO:0031981,GO:0032446,GO:0032991,GO:0036211,GO:0043008,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044388,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046982,GO:0046983,GO:0050790,GO:0065007,GO:0065009,GO:0070013,GO:0070647,GO:0071704,GO:0098772,GO:1901564,GO:1902494
EggNOG free text desc.SUMO activating enzyme activity
EggNOG OGsCOG0476@1,KOG2014@2759
EC2.4.1.258,6.2.1.45
COG Functional cat.H
CAZyGT58
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003,ko04121
Exons2
Model size339
Cds size339
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930037.891145-CDS-H-paniculata_contig33602:552..6901622930037.891145-CDS-H-paniculata_contig33602:552..690Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33602 553..690 +
1691481120.9733834-CDS-H-paniculata_contig33602:552..6901691481120.9733834-CDS-H-paniculata_contig33602:552..690Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33602 553..690 +
1622930037.908466-CDS-H-paniculata_contig33602:2131..23321622930037.908466-CDS-H-paniculata_contig33602:2131..2332Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33602 2132..2332 +
1691481120.9863527-CDS-H-paniculata_contig33602:2131..23321691481120.9863527-CDS-H-paniculata_contig33602:2131..2332Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33602 2132..2332 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig33602.8997.1prot_H-paniculata_contig33602.8997.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig33602 553..2332 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig33602.8997.1

>prot_H-paniculata_contig33602.8997.1 ID=prot_H-paniculata_contig33602.8997.1|Name=mRNA_H-paniculata_contig33602.8997.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=113bp
QVGQNLSDPVDAVFPTLEEATAANWGSLKDRWGLPVTPFVVARGTALFHE
KFGRRPLPSDAPAFAALVESSLATNTMPADYLGGPEGAAAICATASAEVS
PVCAILGGILGQE
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mRNA from alignment at H-paniculata_contig33602:553..2332+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig33602.8997.1 ID=mRNA_H-paniculata_contig33602.8997.1|Name=mRNA_H-paniculata_contig33602.8997.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1780bp|location=Sequence derived from alignment at H-paniculata_contig33602:553..2332+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTGGGCCAGAATCTCAGCGACCCCGTCGACGCTGTGTTCCCAACTCT
GGAGGAAGCGACGGCGGCCAATTGGGGGTCGCTCAAAGACCGCTGGGGTC
TTCCGGTCACTCCCTTCGTGGTAGCTCGAGGTACTGCTGTACGGCCTGAG
CAAGGAAATGCCAACAAAACAGTCAGATCTCACTTACCCTCTGGAGAATA
ACCAAGACCAATATGGATAGCTGAAGAAAACCTCAGACAAATATATTATT
TTCAATTTTGGTGTAAGATACTCGAAGTAATGCAAACTTGGTACTCAAAT
ACAAGGAATATTTGCCGCCGAATATATGGCTCTTAGGGGCATTCCTTGCA
GGTAACGGAAACTTGTTGATTTGAATAATTTTTTTATTTGATCAAATAAG
AGCCAAAATTCTCAAGAACTTGTACAGATAGAATATTTTTTTAATCTAGA
GCATTTTATTTGGCTCCTTTTTTTTTGGGGGGGGGGGTTACTATTTGATT
GACAAATTTCCGTTTTTACGCCAAAAAACGCGTCTGATAAATCGGAATGA
CGCTCTCGGAATACTTCCTGCGGACATGATGAACGAACAGTAAAAATAGT
ACCAACTTTTAGTTATGTTTTGCTGAAATATGTCAGTTATATTATGACCG
TTTGACCGCGATACTCCTTGGCACATTTTGGAATCTTAACTGTAAAAGTC
ATGGTTTATATCATTTTCAACAATATATATATACATATATACAAATGTGT
GTGCTAGTTTTTTGGGGGGTTTTGCCATAAACAGGATATTTTCTCTTATC
TTAGCCGTTTCAGCGATACTGTACCTTTCGGAACATTGGCTGTCTATCCA
TCTACCTTGGTTGTATTGTATATTGTGTACTTACTCTGCTGTACATGATG
GTTCCTCGTCTTGTCGCAAAACTAACTATCGCACAGTCCGATACAGCTGT
ACGCAACAAACGTATTTCGACAGACAGACAGACAGACAGACAGAGGGACC
GACAAAGCTTTCAGGCTAAACTTCGATTTCTTGTGGATATGCTTATAAAT
ATATGTAATTGATGCTGTGAGTACACCTTCCTAGGCAATATCGAGGCACT
TAAATCATCTCTGATTTTTTCTGTTGGAATCCGCTACATGTTTTCGTTGT
TGGGTAAACCCCGAATTTTTCAAGCAAAACGGTTGCCTTTGAAAACACCA
AAACACCAAAACACCAAAAAACACCACGTGACTAAAAGAGCACTCGGCCA
AGAAATAAGACCATGCCTTGCCATGTATGTGTGTGTGTGTGTCTGTGTGT
GTGTCTGTCTGTGTGTGTGTTTTGTCTTGAAAAAACTTTGAAAAAAAGAT
TTTAAAGAGTTACAGATTAATTAAGTTGACAATTTCTGATAGATATGCCT
TGATATACAATAAAAAAATATTTCCATCTGAAGTTGGTTGACTGAATGGT
ATCATTGCCACTGTTTAGTGTATCATCCAAGCCATTTTTGTCCATTGCCA
CTTTACGCACTACGACTATGACTATGACTGGTATAGTACTACTGTTCTCG
CTTATTTTGCTTCTGGCGCAGTTCTGGAGCTGTTTCACGAAAAGTTCGGC
AGACGTCCGCTGCCCTCAGACGCCCCAGCGTTCGCAGCCCTCGTCGAGAG
CTCTCTGGCAACCAACACCATGCCCGCCGACTATTTGGGAGGGCCGGAGG
GTGCGGCGGCTATCTGTGCGACTGCTTCGGCCGAAGTTTCGCCCGTCTGC
GCTATCCTGGGGGGCATCCTAGGCCAAGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig33602:553..2332+

>mRNA_H-paniculata_contig33602.8997.1 ID=mRNA_H-paniculata_contig33602.8997.1|Name=mRNA_H-paniculata_contig33602.8997.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at H-paniculata_contig33602:553..2332+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTGGGCCAGAATCTCAGCGACCCCGTCGACGCTGTGTTCCCAACTCT
GGAGGAAGCGACGGCGGCCAATTGGGGGTCGCTCAAAGACCGCTGGGGTC
TTCCGGTCACTCCCTTCGTGGTAGCTCGAGGTACTGCTCAGGTGGGCCAG
AATCTCAGCGACCCCGTCGACGCTGTGTTCCCAACTCTGGAGGAAGCGAC
GGCGGCCAATTGGGGGTCGCTCAAAGACCGCTGGGGTCTTCCGGTCACTC
CCTTCGTGGTAGCTCGAGGTACTGCTCTGTTTCACGAAAAGTTCGGCAGA
CGTCCGCTGCCCTCAGACGCCCCAGCGTTCGCAGCCCTCGTCGAGAGCTC
TCTGGCAACCAACACCATGCCCGCCGACTATTTGGGAGGGCCGGAGGGTG
CGGCGGCTATCTGTGCGACTGCTTCGGCCGAAGTTTCGCCCGTCTGCGCT
ATCCTGGGGGGCATCCTAGGCCAAGAGCTGTTTCACGAAAAGTTCGGCAG
ACGTCCGCTGCCCTCAGACGCCCCAGCGTTCGCAGCCCTCGTCGAGAGCT
CTCTGGCAACCAACACCATGCCCGCCGACTATTTGGGAGGGCCGGAGGGT
GCGGCGGCTATCTGTGCGACTGCTTCGGCCGAAGTTTCGCCCGTCTGCGC
TATCCTGGGGGGCATCCTAGGCCAAGAG
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