mRNA_H-paniculata_contig33581.8991.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig33581.8991.1
Unique NamemRNA_H-paniculata_contig33581.8991.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig33581.8991.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig33581contigH-paniculata_contig33581:1859..2238 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size380
Cds size366
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930037.1764286-UTR-H-paniculata_contig33581:1858..18721622930037.1764286-UTR-H-paniculata_contig33581:1858..1872Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig33581 1859..1872 +
1691481120.6038847-UTR-H-paniculata_contig33581:1858..18721691481120.6038847-UTR-H-paniculata_contig33581:1858..1872Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig33581 1859..1872 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930037.1916482-CDS-H-paniculata_contig33581:1872..22381622930037.1916482-CDS-H-paniculata_contig33581:1872..2238Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33581 1873..2238 +
1691481120.6154714-CDS-H-paniculata_contig33581:1872..22381691481120.6154714-CDS-H-paniculata_contig33581:1872..2238Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33581 1873..2238 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig33581.8991.1prot_H-paniculata_contig33581.8991.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig33581 1873..2238 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig33581.8991.1

>prot_H-paniculata_contig33581.8991.1 ID=prot_H-paniculata_contig33581.8991.1|Name=mRNA_H-paniculata_contig33581.8991.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=122bp
MPGRTRGDVARLHAAHSRALICADIGIEASVPEDFRNLQYTYGDSLLIDD
FSLTDINEIEFACETVAMSIYITNENNTGTSITRYTGRNEIDHKSEFACL
CLCEDCAFACGVDPPLGHVTDT
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mRNA from alignment at H-paniculata_contig33581:1859..2238+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig33581.8991.1 ID=mRNA_H-paniculata_contig33581.8991.1|Name=mRNA_H-paniculata_contig33581.8991.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=380bp|location=Sequence derived from alignment at H-paniculata_contig33581:1859..2238+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACCGACGGGGATTATGCCGGGACGTACGCGTGGTGATGTGGCTAGGTTG
CATGCTGCCCACAGTCGGGCACTCATCTGCGCGGATATCGGGATCGAGGC
TTCGGTGCCTGAGGATTTCCGGAATCTGCAGTACACGTATGGTGACTCGT
TGTTGATTGATGATTTTTCGTTGACGGATATAAACGAGATTGAGTTTGCA
TGCGAGACAGTAGCCATGTCAATCTACATTACGAACGAAAACAATACCGG
AACGTCGATTACCCGATATACTGGTAGGAATGAAATAGACCATAAGAGTG
AGTTTGCGTGTTTGTGTTTGTGTGAAGATTGTGCTTTCGCATGTGGTGTT
GACCCGCCGCTAGGTCATGTTACTGACACA
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Coding sequence (CDS) from alignment at H-paniculata_contig33581:1859..2238+

>mRNA_H-paniculata_contig33581.8991.1 ID=mRNA_H-paniculata_contig33581.8991.1|Name=mRNA_H-paniculata_contig33581.8991.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=732bp|location=Sequence derived from alignment at H-paniculata_contig33581:1859..2238+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCGGGACGTACGCGTGGTGATGTGGCTAGGTTGCATGCTGCCCACAG
TCGGGCACTCATCTGCGCGGATATCGGGATCGAGGCTTCGGTGCCTGAGG
ATTTCCGGAATCTGCAGTACACGTATGGTGACTCGTTGTTGATTGATGAT
TTTTCGTTGACGGATATAAACGAGATTGAGTTTGCATGCGAGACAGTAGC
CATGTCAATCTACATTACGAACGAAAACAATACCGGAACGTCGATTACCC
GATATACTGGTAGGAATGAAATAGACCATAAGAGTGAGTTTGCGTGTTTG
TGTTTGTGTGAAGATTGTGCTTTCGCATGTGGTGTTGACCCGCCGCTAGG
TCATGTTACTGACACAATGCCGGGACGTACGCGTGGTGATGTGGCTAGGT
TGCATGCTGCCCACAGTCGGGCACTCATCTGCGCGGATATCGGGATCGAG
GCTTCGGTGCCTGAGGATTTCCGGAATCTGCAGTACACGTATGGTGACTC
GTTGTTGATTGATGATTTTTCGTTGACGGATATAAACGAGATTGAGTTTG
CATGCGAGACAGTAGCCATGTCAATCTACATTACGAACGAAAACAATACC
GGAACGTCGATTACCCGATATACTGGTAGGAATGAAATAGACCATAAGAG
TGAGTTTGCGTGTTTGTGTTTGTGTGAAGATTGTGCTTTCGCATGTGGTG
TTGACCCGCCGCTAGGTCATGTTACTGACACA
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