mRNA_H-paniculata_contig33569.8986.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig33569.8986.1
Unique NamemRNA_H-paniculata_contig33569.8986.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig33569.8986.1 vs. uniprot
Match: A0A6H5K0N2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0N2_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 3.260e-29
Identity = 65/121 (53.72%), Postives = 84/121 (69.42%), Query Frame = 1 
Query:    4 LQLRFKLRGGDKGKTFSQAISDEANAAGVELHGLLHDGIETMGKNECATFVVKTD-------DGHGDDGAQP---RLLEYELSLDDWIEEVDVSEGHDRSLVKRILREGDGSTKPVDVGRV 336
            LQL F+L G D+ + F Q +  +ANAAGVELH LLH GIETMG+NE ATFVV  +       +   D  ++P   R  EY +SLDDW+EEVD+SE  D SL+KR++REGDG T+PV++G V
Sbjct:  145 LQLEFRL-GEDEEEGFPQEVLQQANAAGVELHPLLHCGIETMGRNELATFVVTAEGVVAGAQENAADSSSKPPADRRFEYVISLDDWMEEVDLSERQDNSLMKRVVREGDGVTRPVEIGGV 264
[Close]
BLAST of mRNA_H-paniculata_contig33569.8986.1 vs. uniprot
Match: A0A8J9S0N6_9CHLO (Peptidyl-prolyl cis-trans isomerase FKBP62 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9S0N6_9CHLO)

HSP 1 Score: 51.6 bits (122), Expect = 3.540e-5
Identity = 28/84 (33.33%), Postives = 43/84 (51.19%), Query Frame = 1 
Query:  112 DGIETMGKNECATFVVKTDDGHGDDGAQPRL-----LEYELSLDDWIEEVDVSEGHDRSLVKRILREGDGSTKPVDVGRVFIRY 348
            +G++T  K E A    K D  +G+ G+ P++     L +E+ L  W    D++   D  ++K IL EG G TKP D     +RY
Sbjct:   99 EGVKTFKKGEKALLTCKADYAYGEQGSPPKIPPNATLNFEVELLSWKSVKDIA--GDGGVIKTILTEGSGWTKPKDQDEALVRY 180
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig33569.8986.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K0N2_9PHAE3.260e-2953.72Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A8J9S0N6_9CHLO3.540e-533.33Peptidyl-prolyl cis-trans isomerase FKBP62 n=1 Tax... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig33569contigH-paniculata_contig33569:1613..2375 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score118.6
Seed ortholog evalue1.9e-24
Seed eggNOG ortholog2880.D8LFT5
KEGG rclassRC00022,RC00929,RC02834,RC02880
KEGG koko:K00281,ko:K09571
KEGG ReactionR01221,R03425
KEGG Pathwayko00260,ko00630,ko01100,ko01110,ko01130,ko01200,ko04915,map00260,map00630,map01100,map01110,map01130,map01200,map04915
KEGG ModuleM00532
Hectar predicted targeting categoryother localisation
EggNOG free text desc.FK506 binding
EggNOG OGsCOG0545@1,KOG0543@2759
EC1.4.4.2,5.2.1.8
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03110
Exons2
Model size350
Cds size348
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930036.32398-CDS-H-paniculata_contig33569:1612..16691622930036.32398-CDS-H-paniculata_contig33569:1612..1669Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33569 1613..1669 +
1691481120.1963267-CDS-H-paniculata_contig33569:1612..16691691481120.1963267-CDS-H-paniculata_contig33569:1612..1669Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33569 1613..1669 +
1622930036.337769-CDS-H-paniculata_contig33569:2084..23751622930036.337769-CDS-H-paniculata_contig33569:2084..2375Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33569 2085..2375 +
1691481120.2071004-CDS-H-paniculata_contig33569:2084..23751691481120.2071004-CDS-H-paniculata_contig33569:2084..2375Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33569 2085..2375 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig33569.8986.1prot_H-paniculata_contig33569.8986.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig33569 1613..2375 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig33569.8986.1

>prot_H-paniculata_contig33569.8986.1 ID=prot_H-paniculata_contig33569.8986.1|Name=mRNA_H-paniculata_contig33569.8986.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=116bp
NLQLRFKLRGGDKGKTFSQAISDEANAAGVELHGLLHDGIETMGKNECAT
FVVKTDDGHGDDGAQPRLLEYELSLDDWIEEVDVSEGHDRSLVKRILREG
DGSTKPVDVGRVFIRY
back to top

mRNA from alignment at H-paniculata_contig33569:1613..2375+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig33569.8986.1 ID=mRNA_H-paniculata_contig33569.8986.1|Name=mRNA_H-paniculata_contig33569.8986.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=763bp|location=Sequence derived from alignment at H-paniculata_contig33569:1613..2375+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATTTGCAGCTACGGTTCAAGCTTCGGGGGGGGGACAAAGGAAAGACTTT
TTCCCAGGTATGCGCTGAAATTGATGACAAAGTACCATTCTGTACAAGCA
CCTTTCGGTTTTTGGCGATACTACACAACAACTCCCGGCCTCGTTATTCT
CCAATCCCGTCTCGTGATACCAGTGACTCTCGTTGAGGCTTCAGACATCG
CAGTTGTTAACTATTTTAGGTTGATGACTAAAAGCTCCGCGGCAACGAAA
TCTTGAAATCTTGTACCGTATGTTGCTACACGGGTACGAACACCAGCGAC
TTACCGACCATGTGTGCAACACTGGTACCATTTCCTCACCATAGTTCACG
ACGACTCTTACGTAGCAAAGTACACACAAGTAAGTGCTATAAGACCTTAC
AAACAGCAAGTGAAGCATAAAGAAATTATACCCACATAATTTATTTGTCT
CGCACTCACACTTGAATCACAGGCCATATCCGATGAAGCAAATGCTGCAG
GTGTGGAACTTCACGGCTTGTTACACGACGGGATCGAGACAATGGGAAAA
AACGAATGTGCGACTTTTGTCGTAAAAACAGATGACGGGCATGGAGATGA
CGGTGCTCAACCCCGCCTTCTTGAGTATGAGCTATCTCTGGACGACTGGA
TAGAGGAAGTCGACGTGAGCGAGGGACATGATCGTTCGCTTGTGAAGCGC
ATTCTCCGAGAAGGCGACGGCTCTACGAAGCCCGTTGACGTCGGTAGAGT
GTTCATTAGGTAC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig33569:1613..2375+

>mRNA_H-paniculata_contig33569.8986.1 ID=mRNA_H-paniculata_contig33569.8986.1|Name=mRNA_H-paniculata_contig33569.8986.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at H-paniculata_contig33569:1613..2375+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATTTGCAGCTACGGTTCAAGCTTCGGGGGGGGGACAAAGGAAAGACTTT
TTCCCAGAATTTGCAGCTACGGTTCAAGCTTCGGGGGGGGGACAAAGGAA
AGACTTTTTCCCAGGCCATATCCGATGAAGCAAATGCTGCAGGTGTGGAA
CTTCACGGCTTGTTACACGACGGGATCGAGACAATGGGAAAAAACGAATG
TGCGACTTTTGTCGTAAAAACAGATGACGGGCATGGAGATGACGGTGCTC
AACCCCGCCTTCTTGAGTATGAGCTATCTCTGGACGACTGGATAGAGGAA
GTCGACGTGAGCGAGGGACATGATCGTTCGCTTGTGAAGCGCATTCTCCG
AGAAGGCGACGGCTCTACGAAGCCCGTTGACGTCGGTAGAGTGTTCATTA
GGTACGCCATATCCGATGAAGCAAATGCTGCAGGTGTGGAACTTCACGGC
TTGTTACACGACGGGATCGAGACAATGGGAAAAAACGAATGTGCGACTTT
TGTCGTAAAAACAGATGACGGGCATGGAGATGACGGTGCTCAACCCCGCC
TTCTTGAGTATGAGCTATCTCTGGACGACTGGATAGAGGAAGTCGACGTG
AGCGAGGGACATGATCGTTCGCTTGTGAAGCGCATTCTCCGAGAAGGCGA
CGGCTCTACGAAGCCCGTTGACGTCGGTAGAGTGTTCATTAGGTAC
back to top