mRNA_H-paniculata_contig33537.8980.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig33537.8980.1 vs. uniprot
Match: A0A6H5K868_9PHAE (Coatomer_WDAD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K868_9PHAE) HSP 1 Score: 124 bits (312), Expect = 1.130e-31 Identity = 60/70 (85.71%), Postives = 65/70 (92.86%), Query Frame = 1
Query: 10 QVEDCLDLLVSSGRVPEACFMARTYLPSAMGRLVALWKKDLAKVSTKAAQALADPVEYPNMFDDLPWALK 219
QVE+CL+LLVS+GRVPEA FMARTYLPSAMGRLV LWKKDLA VS KA+QALA+PVEYPNMFDDL WALK
Sbjct: 201 QVEECLELLVSAGRVPEAAFMARTYLPSAMGRLVELWKKDLATVSAKASQALANPVEYPNMFDDLDWALK 270
BLAST of mRNA_H-paniculata_contig33537.8980.1 vs. uniprot
Match: A0A7S2SR98_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SR98_9STRA) HSP 1 Score: 104 bits (260), Expect = 1.570e-24 Identity = 47/71 (66.20%), Postives = 60/71 (84.51%), Query Frame = 1
Query: 7 NQVEDCLDLLVSSGRVPEACFMARTYLPSAMGRLVALWKKDLAKVSTKAAQALADPVEYPNMFDDLPWALK 219
N+VE+C++LLV + RVPEA FMARTY+PS M ++V W++DLAKVS +AA+ALADP EYPN+F DL WALK
Sbjct: 770 NEVEECINLLVETDRVPEAAFMARTYMPSMMSKIVVQWREDLAKVSERAAKALADPGEYPNLFPDLDWALK 840
BLAST of mRNA_H-paniculata_contig33537.8980.1 vs. uniprot
Match: A0A835YRX4_9STRA (Coatomer WD associated region-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRX4_9STRA) HSP 1 Score: 102 bits (253), Expect = 1.390e-23 Identity = 48/70 (68.57%), Postives = 59/70 (84.29%), Query Frame = 1
Query: 10 QVEDCLDLLVSSGRVPEACFMARTYLPSAMGRLVALWKKDLAKVSTKAAQALADPVEYPNMFDDLPWALK 219
++E+CL+LLV +GR+PEA FMARTYLPS M RLV LWKKDL VS KAA+ALADP +YPN+F+DL AL+
Sbjct: 749 RLEECLELLVKAGRLPEAAFMARTYLPSEMPRLVELWKKDLQSVSVKAAEALADPSQYPNLFEDLDVALR 818
BLAST of mRNA_H-paniculata_contig33537.8980.1 vs. uniprot
Match: A0A7S2G0J9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G0J9_9STRA) HSP 1 Score: 99.0 bits (245), Expect = 4.230e-23 Identity = 42/69 (60.87%), Postives = 57/69 (82.61%), Query Frame = 1
Query: 10 QVEDCLDLLVSSGRVPEACFMARTYLPSAMGRLVALWKKDLAKVSTKAAQALADPVEYPNMFDDLPWAL 216
++E+C++LL+ +GR+PEA F+ARTY+PS M ++V WK DL KVS +AAQALADP EYPN+F DL WA+
Sbjct: 224 RIEECIELLMQTGRIPEAAFLARTYMPSEMPQIVIKWKADLTKVSERAAQALADPAEYPNLFPDLDWAV 292
BLAST of mRNA_H-paniculata_contig33537.8980.1 vs. uniprot
Match: UPI000C1CDDFA (coatomer subunit beta'-2-like n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1CDDFA) HSP 1 Score: 94.0 bits (232), Expect = 4.650e-23 Identity = 41/67 (61.19%), Postives = 54/67 (80.60%), Query Frame = 1
Query: 1 MGNQVEDCLDLLVSSGRVPEACFMARTYLPSAMGRLVALWKKDLAKVSTKAAQALADPVEYPNMFDD 201
M ++EDCL LLV S R+PEA MAR+YLPS + +VALW+KDL K++ KAA++LADP EYPN+F+D
Sbjct: 1 MSGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVALWRKDLNKINPKAAESLADPEEYPNLFED 67
BLAST of mRNA_H-paniculata_contig33537.8980.1 vs. uniprot
Match: A0A6J0JHN3_RAPSA (coatomer subunit beta'-2-like n=1 Tax=Raphanus sativus TaxID=3726 RepID=A0A6J0JHN3_RAPSA) HSP 1 Score: 95.1 bits (235), Expect = 6.340e-23 Identity = 44/72 (61.11%), Postives = 58/72 (80.56%), Query Frame = 1
Query: 1 MGNQVEDCLDLLVSSGRVPEACFMARTYLPSAMGRLVALWKKDLAKVSTKAAQALADPVEYPNMFDDLPWAL 216
M ++EDCL LLV S R+PEA MAR+YLPS + +VALW+KDL+KV++KAA++LADP EYPN+F+D AL
Sbjct: 1 MLGRLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVALWRKDLSKVNSKAAESLADPEEYPNLFEDWQVAL 72
BLAST of mRNA_H-paniculata_contig33537.8980.1 vs. uniprot
Match: A0A392NQL5_9FABA (Coatomer subunit beta'-2-like (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392NQL5_9FABA) HSP 1 Score: 93.6 bits (231), Expect = 1.940e-22 Identity = 43/72 (59.72%), Postives = 57/72 (79.17%), Query Frame = 1
Query: 1 MGNQVEDCLDLLVSSGRVPEACFMARTYLPSAMGRLVALWKKDLAKVSTKAAQALADPVEYPNMFDDLPWAL 216
M ++EDCL LLV S R+PEA MAR+YLPS + +VA+W+KDL+KV+ KAA++LADP EYPN+F+D AL
Sbjct: 50 MLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLSKVNPKAAESLADPEEYPNLFEDWQVAL 121
BLAST of mRNA_H-paniculata_contig33537.8980.1 vs. uniprot
Match: UPI00053BB939 (coatomer subunit beta'-2-like isoform X1 n=2 Tax=Camelina sativa TaxID=90675 RepID=UPI00053BB939) HSP 1 Score: 95.1 bits (235), Expect = 1.960e-22 Identity = 44/72 (61.11%), Postives = 58/72 (80.56%), Query Frame = 1
Query: 1 MGNQVEDCLDLLVSSGRVPEACFMARTYLPSAMGRLVALWKKDLAKVSTKAAQALADPVEYPNMFDDLPWAL 216
M ++EDCL LLV S R+PEA MAR+YLPS + +VALW+KDL+KV++KAA++LADP EYPN+F+D AL
Sbjct: 50 MLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVALWRKDLSKVNSKAAESLADPEEYPNLFEDWQVAL 121
BLAST of mRNA_H-paniculata_contig33537.8980.1 vs. uniprot
Match: A0A7S3HIJ6_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HIJ6_9STRA) HSP 1 Score: 97.1 bits (240), Expect = 3.420e-22 Identity = 41/70 (58.57%), Postives = 57/70 (81.43%), Query Frame = 1
Query: 10 QVEDCLDLLVSSGRVPEACFMARTYLPSAMGRLVALWKKDLAKVSTKAAQALADPVEYPNMFDDLPWALK 219
QVE+ + LL+ + R+PEA FMARTY+PS + R++ +WK+DL ++ KAA+ALADPV+YPN+F DL WALK
Sbjct: 114 QVEEAIQLLIDANRIPEAAFMARTYMPSQISRVLEIWKRDLKTINEKAAEALADPVKYPNLFPDLSWALK 183
BLAST of mRNA_H-paniculata_contig33537.8980.1 vs. uniprot
Match: A0A250X594_9CHLO (Coatomer subunit beta' n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250X594_9CHLO) HSP 1 Score: 97.8 bits (242), Expect = 4.250e-22 Identity = 44/70 (62.86%), Postives = 54/70 (77.14%), Query Frame = 1
Query: 10 QVEDCLDLLVSSGRVPEACFMARTYLPSAMGRLVALWKKDLAKVSTKAAQALADPVEYPNMFDDLPWALK 219
Q+E C++LLVS+ R+PEA F RTYLPS M + +WKKDL K + KAA+ALADP EYPN+F DL WALK
Sbjct: 757 QLESCMELLVSAKRLPEAAFFCRTYLPSKMSEVTKIWKKDLEKQNPKAAEALADPAEYPNLFPDLEWALK 826 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig33537.8980.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig33537.8980.1 >prot_H-paniculata_contig33537.8980.1 ID=prot_H-paniculata_contig33537.8980.1|Name=mRNA_H-paniculata_contig33537.8980.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=73bp MGNQVEDCLDLLVSSGRVPEACFMARTYLPSAMGRLVALWKKDLAKVSTKback to top mRNA from alignment at H-paniculata_contig33537:805..1618+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig33537.8980.1 ID=mRNA_H-paniculata_contig33537.8980.1|Name=mRNA_H-paniculata_contig33537.8980.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=814bp|location=Sequence derived from alignment at H-paniculata_contig33537:805..1618+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig33537:805..1618+ >mRNA_H-paniculata_contig33537.8980.1 ID=mRNA_H-paniculata_contig33537.8980.1|Name=mRNA_H-paniculata_contig33537.8980.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=438bp|location=Sequence derived from alignment at H-paniculata_contig33537:805..1618+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |