mRNA_H-paniculata_contig33495.8970.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig33495.8970.1 vs. uniprot
Match: A0A151T355_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T355_CAJCA) HSP 1 Score: 164 bits (416), Expect = 4.590e-43 Identity = 90/251 (35.86%), Postives = 125/251 (49.80%), Query Frame = 1
Query: 1 CSACEKGKPSKQPVKNYREKRTTEPLELVHTDIVGPVDK-SFGGCRFAIIFVDDYGRMRKVYTLRQTLEALWALKQFERDVARAHGSRIKYLRSVQGGEYTGKPF------------------------------SIFEMARASMITANMGPRYWAEAVRSAVYSLNRAPMRPHNGGTSYEKWHGETPKLGHLRVFGCTAYFMFQSQQRRKLDDIAWAGVFWGYDEDSPSYRIFIPENKSVQLSRNVKFDE 660
C C+ GK K P R TE L+LVHTD+ GP+ S G ++ ++F+DDY RM V+ L++ + +F+ V G ++K LRS G EYT F ++ EMAR + + +WAEAV ++VY LN P + G T +E WHG TP + HL+VFGC Y + +R KLD + G+F GY S YRI+ P K + +SRNVKFDE
Sbjct: 430 CDVCQYGKQRKLPFPKEASWRATEKLQLVHTDVCGPMSTTSLNGSKYFLLFIDDYTRMSWVFFLKKKSDVFANFLKFKFMVENETGLQVKRLRSDNGTEYTAGEFKKFCEQVGIQHQLTVPYTPQQNGVSERKNRTVMEMARCLLFEKGLPKTFWAEAVNTSVYLLNLLPTKALKGNTPFEAWHGRTPSVEHLKVFGCVCYALVPEVKRDKLDQKSEVGIFLGYSSYSKGYRIYNPATKKILVSRNVKFDE 680
BLAST of mRNA_H-paniculata_contig33495.8970.1 vs. uniprot
Match: W7T9C2_9STRA (Copia-like retrotransposable element (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T9C2_9STRA) HSP 1 Score: 151 bits (382), Expect = 5.700e-40 Identity = 101/264 (38.26%), Postives = 134/264 (50.76%), Query Frame = 1
Query: 1 CSACEKGKPSKQPVKNYREKRTTEPLELVHTDIVGPVD-KSFGGCRFAIIFVDDYGRMRKVYTLRQTLEALWALKQFERDVARAHGSR----IKYLRSVQGGEYTGKPFSIF------------------------------EMARASMITANMGPRYWAEAVRSAVYSLNR---APMRPHNGGTSYEKWHGETPKLGHLRVFGCTAYFMFQSQQRRKLDDIAWAGVFWGYDE--DSPS-YRIFIPENKSVQLSRNVKFDEEDF 669
C CE+ K +K+ +R EPLELVHTD++GP++ +S GG R+AI F DDY R R VYT+R+ E+L LK++ +D + H R + LRS GGEYTG F F MAR+ I A +G R+WAEA+ +A Y LNR + + P G T Y K H R FGC A+ RRKLDD A G+ GYD+ ++P YRI++P S +V FDEE F
Sbjct: 5 CGTCERAKQTKKSFGTKSRERAKEPLELVHTDVLGPIEVESLGGARYAIGFTDDYTRWRVVYTMRRKSESLDCLKRYIKDKSVLHRDRKMKTLIGLRSDNGGEYTGVDFKNFCKNHGIRQDFGIPYGPQDNSAAEKSWHVLSNMARSLRIQAGLGKRFWAEALTTATYILNRTRTSALGP--GETPYYKMFRRHANAKHFRTFGCKAFVHNTLVTRRKLDDRALEGIMIGYDDTGNNPKCYRIYMPSLGKYIRSGHVTFDEETF 266
BLAST of mRNA_H-paniculata_contig33495.8970.1 vs. uniprot
Match: A0A438DPI7_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438DPI7_VITVI) HSP 1 Score: 154 bits (390), Expect = 1.200e-39 Identity = 91/253 (35.97%), Postives = 122/253 (48.22%), Query Frame = 1
Query: 1 CSACEKGKPSKQPVKNYREKRTTEPLELVHTDIVGPVDK-SFGGCRFAIIFVDDYGRMRKVYTLRQTLEALWALKQFERDVARAHGSRIKYLRSVQGGEYTGKPFSIF--EMARASMITANMGPRY---------------------------WAEAVRSAVYSLNRAPMRPHNGGTSYEKWHGETPKLGHLRVFGCTAYFMFQSQQRRKLDDIAWAGVFWGYDEDSPSYRIFIPENKSVQLSRNVKFDEEDF 669
C +CE GK +QP KR T LELVH+DI GP+ S + +F+DD+ RM VY L+ + L K F++ V G +K LR+ GGEYT K F++F E +TA+ P+ WAEAV ++VY LNR P + T E W G P + HL+VFG Y S +R KLD+ A GVF GY S YRI+ + +SR+V FDE +
Sbjct: 62 CESCELGKQHRQPFPQNMSKRATHKLELVHSDICGPMSTASLSNNVYFALFIDDFSRMTWVYFLKTKSQVLSVFKSFKKMVETQSGQNVKVLRTNNGGEYTSKEFNVFCQEAGIVHQLTASYSPQQNGVSKRKNRTVMEMARCMLFEKKLKLLWAEAVNTSVYLLNRVPTKSFQSKTPIEAWSGVKPSVKHLKVFGSFCYLHVSSVKRGKLDERAEKGVFVGYAAKSKGYRIYSLSRMKIVISRDVHFDENSY 314
BLAST of mRNA_H-paniculata_contig33495.8970.1 vs. uniprot
Match: A0A6A2WSJ0_HIBSY (Integrase catalytic domain-containing protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2WSJ0_HIBSY) HSP 1 Score: 154 bits (388), Expect = 2.540e-39 Identity = 86/223 (38.57%), Postives = 122/223 (54.71%), Query Frame = 1
Query: 1 CSACEKGKPSKQPVKNYREKRTTEPLELVHTDIVGPVD-KSFGGCRFAIIFVDDYGRMRKVYTLRQTLEALWALKQFERDVARAHGSRIKYLRSVQGGEYTGKPFSIFEMARASMITANMG-PRYWAEAVRSAVYSLNRAPMRPHNGGTSYEKWHGETPKLGHLRVFGCTAYFMFQSQQRRKLDDIAWAGVFWGYDEDSPSYRIFIPENKSVQLSRNVKFDEE 663
C C GK ++ E R +PLEL+HTD+ GP+ S G + ++F+DD+ R VY L+Q E K+F+ V R G +IK +RS +GGE+T + F E A+ I M PR + V AVY NR+P R G T E W G P + HLR FG A+ ++R KLDD + + +F GYD +S Y+++ P NK +SR+V F+EE
Sbjct: 288 CKGCLAGKQFRKSFPKELETRAKKPLELIHTDVCGPIKPSSLGNSNYFLLFIDDFSRKTWVYFLKQKSEVFEVFKKFKAAVERESGRKIKAMRSDRGGEFTSREFQ--EFCEANGIRRPMTVPRSPQQNVACAVYLTNRSPTRSIWGKTPQEAWSGRKPGISHLRTFGSIAHVHVLDERRTKLDDKSESFIFIGYDANSKGYKLYNPNNKKFVISRDVVFNEE 508
BLAST of mRNA_H-paniculata_contig33495.8970.1 vs. uniprot
Match: A0A6A2X065_HIBSY (Integrase catalytic domain-containing protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2X065_HIBSY) HSP 1 Score: 153 bits (387), Expect = 3.490e-39 Identity = 81/217 (37.33%), Postives = 120/217 (55.30%), Query Frame = 1
Query: 1 CSACEKGKPSKQPVKNYREKRTTEPLELVHTDIVGPVD-KSFGGCRFAIIFVDDYGRMRKVYTLRQTLEALWALKQFERDVARAHGSRIKYLRSVQGGEYTGKPFSIFEMARASMITANMGPRYWAEAVRSAVYSLNRAPMRPHNGGTSYEKWHGETPKLGHLRVFGCTAYFMFQSQQRRKLDDIAWAGVFWGYDEDSPSYRIFIPENKSVQLSRNV 648
C C GK ++ E R +PLEL+HTD+ GP+ S G + ++F+DD+ R VY L+Q E K+F+ V R G +IK +RS + K +I +MAR+ + + + +WAEAV AVY NR+P R G T E W G P + HLR FG A+ ++R KLDD + + +F GYD +S Y+++ P+NK +SR+V
Sbjct: 351 CEGCLAGKQFRKSFPKESETRAKKPLELIHTDVCGPIKPSSLGNSNYFLLFIDDFSRKTWVYFLKQKSEVFEVFKKFKAVVERESGRKIKAMRS----DRERKNITILDMARSMLKSKKLPKEFWAEAVSCAVYLSNRSPTRSVWGKTPQEAWSGRKPGISHLRTFGSIAHVHVPDERRTKLDDKSESFIFIGYDANSKGYKLYNPDNKKFVISRDV 563
BLAST of mRNA_H-paniculata_contig33495.8970.1 vs. uniprot
Match: A0A8J5YBU1_9ROSI (Uncharacterized protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5YBU1_9ROSI) HSP 1 Score: 152 bits (383), Expect = 5.590e-39 Identity = 83/219 (37.90%), Postives = 125/219 (57.08%), Query Frame = 1
Query: 10 CEKGKPSKQPVKNYREKRTTEPLELVHTDIVGPV-DKSFGGCRFAIIFVDDYGRMRKVYTLRQTLEALWALKQFERDVARAHGSRIKYLRSVQGGEYTG-KPFSIFEMARASMITANMGPRYWAEAVRSAVYSLNRAPMRPHNGGTSYEKWHGETPKLGHLRVFGCTAYFMFQSQQRRKLDDIAWAGVFWGYDEDSPSYRIFIPENKSVQLSRNVKFDE 660
C GK ++ + E RT +PLEL+HTDI GP+ +SF R+ I F+DD+ R VY L++ EA K+F+ V +A G IK +RS +GG+ K +++ M R+ + + M +WAEAV+ A+Y NR P N T E W G+ P + HL+VF AY Q+R KL+D + +F GYDE + Y++ P +K +SR+V+ +E
Sbjct: 416 CVLGKHARTSFQKMVEYRTKQPLELIHTDICGPITSESFSRKRYFISFIDDFSRKTWVYFLKEKSEAFEVFKKFKVMVEKATGRHIKSVRSDRGGDVAERKNWTVLNMVRSMLKSEKMPKEFWAEAVQCAIYVQNRCPHAKLNDKTPQEAWSGQKPTVSHLKVFDSEAYAHVPDQRRTKLEDKSKRFIFIGYDEKTKGYKLLDPISKKAVVSRDVRVNE 634
BLAST of mRNA_H-paniculata_contig33495.8970.1 vs. uniprot
Match: A0A5D3CBW3_CUCME (Integrase n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3CBW3_CUCME) HSP 1 Score: 152 bits (385), Expect = 6.410e-39 Identity = 89/251 (35.46%), Postives = 128/251 (51.00%), Query Frame = 1
Query: 1 CSACEKGKPSKQPVKNYREKRTTEPLELVHTDIVGPVDKSF-GGCRFAIIFVDDYGRMRKVYTLRQTLEALWALKQFERDVARAHGSRIKYLRSVQGGEYTG----------------------------KPFSIFEMARASMITANMGPRYWAEAVRSAVYSLNRAPMRPHNGGTSYEKWHGETPKLGHLRVFGCTAYFMFQSQQRRKLDDIAWAGVFWGYDEDSPSYRIFIPENKSVQLSRNVKFDEED 666
C C K + + R ++PLEL+HTD+ GP+ + GG R+ I F+DD+ R +Y L++ EAL K F+ G +IK LRS +GGEY K +I EMAR+ + N+ +W +AV VY LNRAP + G T YE W GE P + HLRVFG AY +Q R KLDD + + GY E+S +YR++ P ++ + +SR+V F E++
Sbjct: 505 CEVCILAKHHRDSFPTGKAWRASKPLELIHTDLCGPMRTTTNGGNRYFITFIDDFSRKLWIYFLKEKSEALVCFKSFKAFTENQSGYKIKTLRSDRGGEYIAFGNFFKEQGIHHQMTARMTPQQNGVAERKNRTIMEMARSMLKAKNLPNEFWGDAVACTVYILNRAPTKSVPGMTPYEAWCGEKPSVSHLRVFGSIAYSHIPNQLRGKLDDKSEKCIMVGYSENSKAYRLYNPVSRKIIISRDVIFSEDE 755
BLAST of mRNA_H-paniculata_contig33495.8970.1 vs. uniprot
Match: A0A5A7V047_CUCME (Integrase n=21 Tax=Cucumis melo TaxID=3656 RepID=A0A5A7V047_CUCME) HSP 1 Score: 152 bits (385), Expect = 6.660e-39 Identity = 89/251 (35.46%), Postives = 128/251 (51.00%), Query Frame = 1
Query: 1 CSACEKGKPSKQPVKNYREKRTTEPLELVHTDIVGPVDKSF-GGCRFAIIFVDDYGRMRKVYTLRQTLEALWALKQFERDVARAHGSRIKYLRSVQGGEYTG----------------------------KPFSIFEMARASMITANMGPRYWAEAVRSAVYSLNRAPMRPHNGGTSYEKWHGETPKLGHLRVFGCTAYFMFQSQQRRKLDDIAWAGVFWGYDEDSPSYRIFIPENKSVQLSRNVKFDEED 666
C C K + + R ++PLEL+HTD+ GP+ + GG R+ I F+DD+ R +Y L++ EAL K F+ G +IK LRS +GGEY K +I EMAR+ + N+ +W +AV VY LNRAP + G T YE W GE P + HLRVFG AY +Q R KLDD + + GY E+S +YR++ P ++ + +SR+V F E++
Sbjct: 561 CEVCILAKHHRDSFPTGKAWRASKPLELIHTDLCGPMRTTTNGGNRYFITFIDDFSRKLWIYFLKEKSEALVCFKSFKAFTENQSGYKIKTLRSDRGGEYIAFGNFFKEQGIHHQMTARMTPQQNGVAERKNRTIMEMARSMLKAKNLPNEFWGDAVACTVYILNRAPTKSVPGMTPYEAWCGEKPSVSHLRVFGSIAYSHIPNQLRGKLDDKSEKCIMVGYSENSKAYRLYNPVSRKIIISRDVIFSEDE 811
BLAST of mRNA_H-paniculata_contig33495.8970.1 vs. uniprot
Match: A0A5D3CXM6_CUCME (Integrase n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3CXM6_CUCME) HSP 1 Score: 152 bits (385), Expect = 6.900e-39 Identity = 89/251 (35.46%), Postives = 128/251 (51.00%), Query Frame = 1
Query: 1 CSACEKGKPSKQPVKNYREKRTTEPLELVHTDIVGPVDKSF-GGCRFAIIFVDDYGRMRKVYTLRQTLEALWALKQFERDVARAHGSRIKYLRSVQGGEYTG----------------------------KPFSIFEMARASMITANMGPRYWAEAVRSAVYSLNRAPMRPHNGGTSYEKWHGETPKLGHLRVFGCTAYFMFQSQQRRKLDDIAWAGVFWGYDEDSPSYRIFIPENKSVQLSRNVKFDEED 666
C C K + + R ++PLEL+HTD+ GP+ + GG R+ I F+DD+ R +Y L++ EAL K F+ G +IK LRS +GGEY K +I EMAR+ + N+ +W +AV VY LNRAP + G T YE W GE P + HLRVFG AY +Q R KLDD + + GY E+S +YR++ P ++ + +SR+V F E++
Sbjct: 970 CEVCILAKHHRDSFPTGKAWRASKPLELIHTDLCGPMRTTTNGGNRYFITFIDDFSRKLWIYFLKEKSEALVCFKSFKAFTENQSGYKIKTLRSDRGGEYIAFGNFFKEQGIHHQMTARMTPQQNGVAERKNRTIMEMARSMLKAKNLPNEFWGDAVACTVYILNRAPTKSVPGMTPYEAWCGEKPSVSHLRVFGSIAYSHIPNQLRGKLDDKSEKCIMVGYSENSKAYRLYNPVSRKIIISRDVIFSEDE 1220
BLAST of mRNA_H-paniculata_contig33495.8970.1 vs. uniprot
Match: A0A8J6L9W6_TENMO (Uncharacterized protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6L9W6_TENMO) HSP 1 Score: 152 bits (384), Expect = 8.890e-39 Identity = 87/249 (34.94%), Postives = 125/249 (50.20%), Query Frame = 1
Query: 1 CSACEKGKPSKQPVKNYREKRTTEPLELVHTDIVGPVD-KSFGGCRFAIIFVDDYGRMRKVYTLRQTLEALWALKQFERDVARAHGSRIKYLRSVQGGEYTGKPF------------------------------SIFEMARASMITANMGPRYWAEAVRSAVYSLNRAPMRPHNGGTSYEKWHGETPKLGHLRVFGCTAYFMFQSQQRRKLDDIAWAGVFWGYDEDSPSYRIFIPENKSVQLSRNVKF 654
C C +GK + P R RT+E LEL+H+D+ GP+ +S R+ I F+DD R V LR EA+ A K F V G +IK ++ GGEYT + F ++ +MAR M+ + + P +WAEAV +A Y NR P + G T YE W G+ P + H R FGC + + + R K D A GVF GY E+S YR+++P + V+++R+VKF
Sbjct: 328 CEVCLQGKMVRTPFPK-RSDRTSELLELIHSDVCGPMRVESMSKARYFIEFIDDCSRWTVVRFLRSKSEAIEATKGFITMVENQQGKKIKTFQTDNGGEYTSEQFDNLLKGLGITRRFTIPHNPEQNGIAERKNRTLLDMARCLMLQSGLPPSFWAEAVNTANYIRNRCPSKSLGGRTPYEVWTGKKPNVSHFREFGCRVFRLDRQPNRGKFDSRAKEGVFLGYSEESKGYRVWMPNERKVEITRDVKF 575 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig33495.8970.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig33495.8970.1 >prot_H-paniculata_contig33495.8970.1 ID=prot_H-paniculata_contig33495.8970.1|Name=mRNA_H-paniculata_contig33495.8970.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=223bp CSACEKGKPSKQPVKNYREKRTTEPLELVHTDIVGPVDKSFGGCRFAIIFback to top mRNA from alignment at H-paniculata_contig33495:247..1005- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig33495.8970.1 ID=mRNA_H-paniculata_contig33495.8970.1|Name=mRNA_H-paniculata_contig33495.8970.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=759bp|location=Sequence derived from alignment at H-paniculata_contig33495:247..1005- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig33495:247..1005- >mRNA_H-paniculata_contig33495.8970.1 ID=mRNA_H-paniculata_contig33495.8970.1|Name=mRNA_H-paniculata_contig33495.8970.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1338bp|location=Sequence derived from alignment at H-paniculata_contig33495:247..1005- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |