mRNA_H-paniculata_contig33495.8970.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig33495.8970.1
Unique NamemRNA_H-paniculata_contig33495.8970.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig33495.8970.1 vs. uniprot
Match: A0A151T355_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T355_CAJCA)

HSP 1 Score: 164 bits (416), Expect = 4.590e-43
Identity = 90/251 (35.86%), Postives = 125/251 (49.80%), Query Frame = 1
Query:    1 CSACEKGKPSKQPVKNYREKRTTEPLELVHTDIVGPVDK-SFGGCRFAIIFVDDYGRMRKVYTLRQTLEALWALKQFERDVARAHGSRIKYLRSVQGGEYTGKPF------------------------------SIFEMARASMITANMGPRYWAEAVRSAVYSLNRAPMRPHNGGTSYEKWHGETPKLGHLRVFGCTAYFMFQSQQRRKLDDIAWAGVFWGYDEDSPSYRIFIPENKSVQLSRNVKFDE 660
            C  C+ GK  K P       R TE L+LVHTD+ GP+   S  G ++ ++F+DDY RM  V+ L++  +      +F+  V    G ++K LRS  G EYT   F                              ++ EMAR  +    +   +WAEAV ++VY LN  P +   G T +E WHG TP + HL+VFGC  Y +    +R KLD  +  G+F GY   S  YRI+ P  K + +SRNVKFDE
Sbjct:  430 CDVCQYGKQRKLPFPKEASWRATEKLQLVHTDVCGPMSTTSLNGSKYFLLFIDDYTRMSWVFFLKKKSDVFANFLKFKFMVENETGLQVKRLRSDNGTEYTAGEFKKFCEQVGIQHQLTVPYTPQQNGVSERKNRTVMEMARCLLFEKGLPKTFWAEAVNTSVYLLNLLPTKALKGNTPFEAWHGRTPSVEHLKVFGCVCYALVPEVKRDKLDQKSEVGIFLGYSSYSKGYRIYNPATKKILVSRNVKFDE 680          
BLAST of mRNA_H-paniculata_contig33495.8970.1 vs. uniprot
Match: W7T9C2_9STRA (Copia-like retrotransposable element (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T9C2_9STRA)

HSP 1 Score: 151 bits (382), Expect = 5.700e-40
Identity = 101/264 (38.26%), Postives = 134/264 (50.76%), Query Frame = 1
Query:    1 CSACEKGKPSKQPVKNYREKRTTEPLELVHTDIVGPVD-KSFGGCRFAIIFVDDYGRMRKVYTLRQTLEALWALKQFERDVARAHGSR----IKYLRSVQGGEYTGKPFSIF------------------------------EMARASMITANMGPRYWAEAVRSAVYSLNR---APMRPHNGGTSYEKWHGETPKLGHLRVFGCTAYFMFQSQQRRKLDDIAWAGVFWGYDE--DSPS-YRIFIPENKSVQLSRNVKFDEEDF 669
            C  CE+ K +K+       +R  EPLELVHTD++GP++ +S GG R+AI F DDY R R VYT+R+  E+L  LK++ +D +  H  R    +  LRS  GGEYTG  F  F                               MAR+  I A +G R+WAEA+ +A Y LNR   + + P  G T Y K         H R FGC A+       RRKLDD A  G+  GYD+  ++P  YRI++P       S +V FDEE F
Sbjct:    5 CGTCERAKQTKKSFGTKSRERAKEPLELVHTDVLGPIEVESLGGARYAIGFTDDYTRWRVVYTMRRKSESLDCLKRYIKDKSVLHRDRKMKTLIGLRSDNGGEYTGVDFKNFCKNHGIRQDFGIPYGPQDNSAAEKSWHVLSNMARSLRIQAGLGKRFWAEALTTATYILNRTRTSALGP--GETPYYKMFRRHANAKHFRTFGCKAFVHNTLVTRRKLDDRALEGIMIGYDDTGNNPKCYRIYMPSLGKYIRSGHVTFDEETF 266          
BLAST of mRNA_H-paniculata_contig33495.8970.1 vs. uniprot
Match: A0A438DPI7_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438DPI7_VITVI)

HSP 1 Score: 154 bits (390), Expect = 1.200e-39
Identity = 91/253 (35.97%), Postives = 122/253 (48.22%), Query Frame = 1
Query:    1 CSACEKGKPSKQPVKNYREKRTTEPLELVHTDIVGPVDK-SFGGCRFAIIFVDDYGRMRKVYTLRQTLEALWALKQFERDVARAHGSRIKYLRSVQGGEYTGKPFSIF--EMARASMITANMGPRY---------------------------WAEAVRSAVYSLNRAPMRPHNGGTSYEKWHGETPKLGHLRVFGCTAYFMFQSQQRRKLDDIAWAGVFWGYDEDSPSYRIFIPENKSVQLSRNVKFDEEDF 669
            C +CE GK  +QP      KR T  LELVH+DI GP+   S     +  +F+DD+ RM  VY L+   + L   K F++ V    G  +K LR+  GGEYT K F++F  E      +TA+  P+                            WAEAV ++VY LNR P +     T  E W G  P + HL+VFG   Y    S +R KLD+ A  GVF GY   S  YRI+      + +SR+V FDE  +
Sbjct:   62 CESCELGKQHRQPFPQNMSKRATHKLELVHSDICGPMSTASLSNNVYFALFIDDFSRMTWVYFLKTKSQVLSVFKSFKKMVETQSGQNVKVLRTNNGGEYTSKEFNVFCQEAGIVHQLTASYSPQQNGVSKRKNRTVMEMARCMLFEKKLKLLWAEAVNTSVYLLNRVPTKSFQSKTPIEAWSGVKPSVKHLKVFGSFCYLHVSSVKRGKLDERAEKGVFVGYAAKSKGYRIYSLSRMKIVISRDVHFDENSY 314          
BLAST of mRNA_H-paniculata_contig33495.8970.1 vs. uniprot
Match: A0A6A2WSJ0_HIBSY (Integrase catalytic domain-containing protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2WSJ0_HIBSY)

HSP 1 Score: 154 bits (388), Expect = 2.540e-39
Identity = 86/223 (38.57%), Postives = 122/223 (54.71%), Query Frame = 1
Query:    1 CSACEKGKPSKQPVKNYREKRTTEPLELVHTDIVGPVD-KSFGGCRFAIIFVDDYGRMRKVYTLRQTLEALWALKQFERDVARAHGSRIKYLRSVQGGEYTGKPFSIFEMARASMITANMG-PRYWAEAVRSAVYSLNRAPMRPHNGGTSYEKWHGETPKLGHLRVFGCTAYFMFQSQQRRKLDDIAWAGVFWGYDEDSPSYRIFIPENKSVQLSRNVKFDEE 663
            C  C  GK  ++      E R  +PLEL+HTD+ GP+   S G   + ++F+DD+ R   VY L+Q  E     K+F+  V R  G +IK +RS +GGE+T + F   E   A+ I   M  PR   + V  AVY  NR+P R   G T  E W G  P + HLR FG  A+     ++R KLDD + + +F GYD +S  Y+++ P NK   +SR+V F+EE
Sbjct:  288 CKGCLAGKQFRKSFPKELETRAKKPLELIHTDVCGPIKPSSLGNSNYFLLFIDDFSRKTWVYFLKQKSEVFEVFKKFKAAVERESGRKIKAMRSDRGGEFTSREFQ--EFCEANGIRRPMTVPRSPQQNVACAVYLTNRSPTRSIWGKTPQEAWSGRKPGISHLRTFGSIAHVHVLDERRTKLDDKSESFIFIGYDANSKGYKLYNPNNKKFVISRDVVFNEE 508          
BLAST of mRNA_H-paniculata_contig33495.8970.1 vs. uniprot
Match: A0A6A2X065_HIBSY (Integrase catalytic domain-containing protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2X065_HIBSY)

HSP 1 Score: 153 bits (387), Expect = 3.490e-39
Identity = 81/217 (37.33%), Postives = 120/217 (55.30%), Query Frame = 1
Query:    1 CSACEKGKPSKQPVKNYREKRTTEPLELVHTDIVGPVD-KSFGGCRFAIIFVDDYGRMRKVYTLRQTLEALWALKQFERDVARAHGSRIKYLRSVQGGEYTGKPFSIFEMARASMITANMGPRYWAEAVRSAVYSLNRAPMRPHNGGTSYEKWHGETPKLGHLRVFGCTAYFMFQSQQRRKLDDIAWAGVFWGYDEDSPSYRIFIPENKSVQLSRNV 648
            C  C  GK  ++      E R  +PLEL+HTD+ GP+   S G   + ++F+DD+ R   VY L+Q  E     K+F+  V R  G +IK +RS    +   K  +I +MAR+ + +  +   +WAEAV  AVY  NR+P R   G T  E W G  P + HLR FG  A+     ++R KLDD + + +F GYD +S  Y+++ P+NK   +SR+V
Sbjct:  351 CEGCLAGKQFRKSFPKESETRAKKPLELIHTDVCGPIKPSSLGNSNYFLLFIDDFSRKTWVYFLKQKSEVFEVFKKFKAVVERESGRKIKAMRS----DRERKNITILDMARSMLKSKKLPKEFWAEAVSCAVYLSNRSPTRSVWGKTPQEAWSGRKPGISHLRTFGSIAHVHVPDERRTKLDDKSESFIFIGYDANSKGYKLYNPDNKKFVISRDV 563          
BLAST of mRNA_H-paniculata_contig33495.8970.1 vs. uniprot
Match: A0A8J5YBU1_9ROSI (Uncharacterized protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5YBU1_9ROSI)

HSP 1 Score: 152 bits (383), Expect = 5.590e-39
Identity = 83/219 (37.90%), Postives = 125/219 (57.08%), Query Frame = 1
Query:   10 CEKGKPSKQPVKNYREKRTTEPLELVHTDIVGPV-DKSFGGCRFAIIFVDDYGRMRKVYTLRQTLEALWALKQFERDVARAHGSRIKYLRSVQGGEYTG-KPFSIFEMARASMITANMGPRYWAEAVRSAVYSLNRAPMRPHNGGTSYEKWHGETPKLGHLRVFGCTAYFMFQSQQRRKLDDIAWAGVFWGYDEDSPSYRIFIPENKSVQLSRNVKFDE 660
            C  GK ++   +   E RT +PLEL+HTDI GP+  +SF   R+ I F+DD+ R   VY L++  EA    K+F+  V +A G  IK +RS +GG+    K +++  M R+ + +  M   +WAEAV+ A+Y  NR P    N  T  E W G+ P + HL+VF   AY     Q+R KL+D +   +F GYDE +  Y++  P +K   +SR+V+ +E
Sbjct:  416 CVLGKHARTSFQKMVEYRTKQPLELIHTDICGPITSESFSRKRYFISFIDDFSRKTWVYFLKEKSEAFEVFKKFKVMVEKATGRHIKSVRSDRGGDVAERKNWTVLNMVRSMLKSEKMPKEFWAEAVQCAIYVQNRCPHAKLNDKTPQEAWSGQKPTVSHLKVFDSEAYAHVPDQRRTKLEDKSKRFIFIGYDEKTKGYKLLDPISKKAVVSRDVRVNE 634          
BLAST of mRNA_H-paniculata_contig33495.8970.1 vs. uniprot
Match: A0A5D3CBW3_CUCME (Integrase n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3CBW3_CUCME)

HSP 1 Score: 152 bits (385), Expect = 6.410e-39
Identity = 89/251 (35.46%), Postives = 128/251 (51.00%), Query Frame = 1
Query:    1 CSACEKGKPSKQPVKNYREKRTTEPLELVHTDIVGPVDKSF-GGCRFAIIFVDDYGRMRKVYTLRQTLEALWALKQFERDVARAHGSRIKYLRSVQGGEYTG----------------------------KPFSIFEMARASMITANMGPRYWAEAVRSAVYSLNRAPMRPHNGGTSYEKWHGETPKLGHLRVFGCTAYFMFQSQQRRKLDDIAWAGVFWGYDEDSPSYRIFIPENKSVQLSRNVKFDEED 666
            C  C   K  +      +  R ++PLEL+HTD+ GP+  +  GG R+ I F+DD+ R   +Y L++  EAL   K F+       G +IK LRS +GGEY                              K  +I EMAR+ +   N+   +W +AV   VY LNRAP +   G T YE W GE P + HLRVFG  AY    +Q R KLDD +   +  GY E+S +YR++ P ++ + +SR+V F E++
Sbjct:  505 CEVCILAKHHRDSFPTGKAWRASKPLELIHTDLCGPMRTTTNGGNRYFITFIDDFSRKLWIYFLKEKSEALVCFKSFKAFTENQSGYKIKTLRSDRGGEYIAFGNFFKEQGIHHQMTARMTPQQNGVAERKNRTIMEMARSMLKAKNLPNEFWGDAVACTVYILNRAPTKSVPGMTPYEAWCGEKPSVSHLRVFGSIAYSHIPNQLRGKLDDKSEKCIMVGYSENSKAYRLYNPVSRKIIISRDVIFSEDE 755          
BLAST of mRNA_H-paniculata_contig33495.8970.1 vs. uniprot
Match: A0A5A7V047_CUCME (Integrase n=21 Tax=Cucumis melo TaxID=3656 RepID=A0A5A7V047_CUCME)

HSP 1 Score: 152 bits (385), Expect = 6.660e-39
Identity = 89/251 (35.46%), Postives = 128/251 (51.00%), Query Frame = 1
Query:    1 CSACEKGKPSKQPVKNYREKRTTEPLELVHTDIVGPVDKSF-GGCRFAIIFVDDYGRMRKVYTLRQTLEALWALKQFERDVARAHGSRIKYLRSVQGGEYTG----------------------------KPFSIFEMARASMITANMGPRYWAEAVRSAVYSLNRAPMRPHNGGTSYEKWHGETPKLGHLRVFGCTAYFMFQSQQRRKLDDIAWAGVFWGYDEDSPSYRIFIPENKSVQLSRNVKFDEED 666
            C  C   K  +      +  R ++PLEL+HTD+ GP+  +  GG R+ I F+DD+ R   +Y L++  EAL   K F+       G +IK LRS +GGEY                              K  +I EMAR+ +   N+   +W +AV   VY LNRAP +   G T YE W GE P + HLRVFG  AY    +Q R KLDD +   +  GY E+S +YR++ P ++ + +SR+V F E++
Sbjct:  561 CEVCILAKHHRDSFPTGKAWRASKPLELIHTDLCGPMRTTTNGGNRYFITFIDDFSRKLWIYFLKEKSEALVCFKSFKAFTENQSGYKIKTLRSDRGGEYIAFGNFFKEQGIHHQMTARMTPQQNGVAERKNRTIMEMARSMLKAKNLPNEFWGDAVACTVYILNRAPTKSVPGMTPYEAWCGEKPSVSHLRVFGSIAYSHIPNQLRGKLDDKSEKCIMVGYSENSKAYRLYNPVSRKIIISRDVIFSEDE 811          
BLAST of mRNA_H-paniculata_contig33495.8970.1 vs. uniprot
Match: A0A5D3CXM6_CUCME (Integrase n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3CXM6_CUCME)

HSP 1 Score: 152 bits (385), Expect = 6.900e-39
Identity = 89/251 (35.46%), Postives = 128/251 (51.00%), Query Frame = 1
Query:    1 CSACEKGKPSKQPVKNYREKRTTEPLELVHTDIVGPVDKSF-GGCRFAIIFVDDYGRMRKVYTLRQTLEALWALKQFERDVARAHGSRIKYLRSVQGGEYTG----------------------------KPFSIFEMARASMITANMGPRYWAEAVRSAVYSLNRAPMRPHNGGTSYEKWHGETPKLGHLRVFGCTAYFMFQSQQRRKLDDIAWAGVFWGYDEDSPSYRIFIPENKSVQLSRNVKFDEED 666
            C  C   K  +      +  R ++PLEL+HTD+ GP+  +  GG R+ I F+DD+ R   +Y L++  EAL   K F+       G +IK LRS +GGEY                              K  +I EMAR+ +   N+   +W +AV   VY LNRAP +   G T YE W GE P + HLRVFG  AY    +Q R KLDD +   +  GY E+S +YR++ P ++ + +SR+V F E++
Sbjct:  970 CEVCILAKHHRDSFPTGKAWRASKPLELIHTDLCGPMRTTTNGGNRYFITFIDDFSRKLWIYFLKEKSEALVCFKSFKAFTENQSGYKIKTLRSDRGGEYIAFGNFFKEQGIHHQMTARMTPQQNGVAERKNRTIMEMARSMLKAKNLPNEFWGDAVACTVYILNRAPTKSVPGMTPYEAWCGEKPSVSHLRVFGSIAYSHIPNQLRGKLDDKSEKCIMVGYSENSKAYRLYNPVSRKIIISRDVIFSEDE 1220          
BLAST of mRNA_H-paniculata_contig33495.8970.1 vs. uniprot
Match: A0A8J6L9W6_TENMO (Uncharacterized protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6L9W6_TENMO)

HSP 1 Score: 152 bits (384), Expect = 8.890e-39
Identity = 87/249 (34.94%), Postives = 125/249 (50.20%), Query Frame = 1
Query:    1 CSACEKGKPSKQPVKNYREKRTTEPLELVHTDIVGPVD-KSFGGCRFAIIFVDDYGRMRKVYTLRQTLEALWALKQFERDVARAHGSRIKYLRSVQGGEYTGKPF------------------------------SIFEMARASMITANMGPRYWAEAVRSAVYSLNRAPMRPHNGGTSYEKWHGETPKLGHLRVFGCTAYFMFQSQQRRKLDDIAWAGVFWGYDEDSPSYRIFIPENKSVQLSRNVKF 654
            C  C +GK  + P    R  RT+E LEL+H+D+ GP+  +S    R+ I F+DD  R   V  LR   EA+ A K F   V    G +IK  ++  GGEYT + F                              ++ +MAR  M+ + + P +WAEAV +A Y  NR P +   G T YE W G+ P + H R FGC  + + +   R K D  A  GVF GY E+S  YR+++P  + V+++R+VKF
Sbjct:  328 CEVCLQGKMVRTPFPK-RSDRTSELLELIHSDVCGPMRVESMSKARYFIEFIDDCSRWTVVRFLRSKSEAIEATKGFITMVENQQGKKIKTFQTDNGGEYTSEQFDNLLKGLGITRRFTIPHNPEQNGIAERKNRTLLDMARCLMLQSGLPPSFWAEAVNTANYIRNRCPSKSLGGRTPYEVWTGKKPNVSHFREFGCRVFRLDRQPNRGKFDSRAKEGVFLGYSEESKGYRVWMPNERKVEITRDVKF 575          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig33495.8970.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A151T355_CAJCA4.590e-4335.86Retrovirus-related Pol polyprotein from transposon... [more]
W7T9C2_9STRA5.700e-4038.26Copia-like retrotransposable element (Fragment) n=... [more]
A0A438DPI7_VITVI1.200e-3935.97Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A2WSJ0_HIBSY2.540e-3938.57Integrase catalytic domain-containing protein n=1 ... [more]
A0A6A2X065_HIBSY3.490e-3937.33Integrase catalytic domain-containing protein n=1 ... [more]
A0A8J5YBU1_9ROSI5.590e-3937.90Uncharacterized protein n=1 Tax=Gossypium anomalum... [more]
A0A5D3CBW3_CUCME6.410e-3935.46Integrase n=1 Tax=Cucumis melo var. makuwa TaxID=1... [more]
A0A5A7V047_CUCME6.660e-3935.46Integrase n=21 Tax=Cucumis melo TaxID=3656 RepID=A... [more]
A0A5D3CXM6_CUCME6.900e-3935.46Integrase n=1 Tax=Cucumis melo var. makuwa TaxID=1... [more]
A0A8J6L9W6_TENMO8.890e-3934.94Uncharacterized protein n=1 Tax=Tenebrio molitor T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig33495contigH-paniculata_contig33495:247..1005 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score152.9
Seed ortholog evalue1.7e-34
Seed eggNOG ortholog400682.PAC_15703055
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs3ACW4@33154,3BVPH@33208,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Exons2
Model size669
Cds size669
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930034.3820765-CDS-H-paniculata_contig33495:246..6011622930034.3820765-CDS-H-paniculata_contig33495:246..601Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33495 247..601 -
1691481119.3340955-CDS-H-paniculata_contig33495:246..6011691481119.3340955-CDS-H-paniculata_contig33495:246..601Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33495 247..601 -
1622930034.3975275-CDS-H-paniculata_contig33495:691..10051622930034.3975275-CDS-H-paniculata_contig33495:691..1005Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33495 692..1005 -
1691481119.3535662-CDS-H-paniculata_contig33495:691..10051691481119.3535662-CDS-H-paniculata_contig33495:691..1005Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33495 692..1005 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig33495.8970.1prot_H-paniculata_contig33495.8970.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig33495 247..1005 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig33495.8970.1

>prot_H-paniculata_contig33495.8970.1 ID=prot_H-paniculata_contig33495.8970.1|Name=mRNA_H-paniculata_contig33495.8970.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=223bp
CSACEKGKPSKQPVKNYREKRTTEPLELVHTDIVGPVDKSFGGCRFAIIF
VDDYGRMRKVYTLRQTLEALWALKQFERDVARAHGSRIKYLRSVQGGEYT
GKPFSIFEMARASMITANMGPRYWAEAVRSAVYSLNRAPMRPHNGGTSYE
KWHGETPKLGHLRVFGCTAYFMFQSQQRRKLDDIAWAGVFWGYDEDSPSY
RIFIPENKSVQLSRNVKFDEEDF
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mRNA from alignment at H-paniculata_contig33495:247..1005-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig33495.8970.1 ID=mRNA_H-paniculata_contig33495.8970.1|Name=mRNA_H-paniculata_contig33495.8970.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=759bp|location=Sequence derived from alignment at H-paniculata_contig33495:247..1005- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCTCGGCGTGTGAGAAAGGGAAACCGTCCAAGCAGCCTGTGAAAAATTA TCGAGAAAAGCGGACGACCGAGCCGTTGGAGCTGGTGCACACCGACATAG TCGGACCGGTGGACAAGTCCTTCGGAGGATGTCGCTTCGCCATCATCTTC GTTGACGACTACGGCAGAATGCGCAAAGTCTATACCTTGCGACAAACGTT GGAGGCGCTATGGGCCCTGAAGCAATTCGAGAGGGACGTAGCGAGGGCGC ACGGTTCGCGGATTAAGTACCTTCGGTCGGTTCAGGGAGGAGAATATACT GGGAAGCCTTTTAGGTAATTCTGCGCTGAAAATGGCATCAAACAGGAGTT CTCTGCGGCCTACACACCGCAACAAAACGGTGTGGCAAAGCGCAGCTGGC GCAGCATTTTCGAGATGGCAAGAGCCAGCATGATCACCGCCAACATGGGT CCTAGATATTGGGCGGAAGCGGTGCGCTCGGCAGTGTACTCCCTAAATCG TGCCCCAATGCGACCGCACAACGGAGGAACATCGTACGAAAAGTGGCACG GAGAGACACCAAAGTTGGGCCACCTTCGCGTCTTCGGCTGCACGGCGTAT TTTATGTTCCAGTCGCAACAGAGACGCAAGCTCGACGACATAGCATGGGC GGGGGTGTTTTGGGGGTACGACGAGGACAGCCCGAGTTATCGCATATTTA TCCCGGAAAACAAGAGCGTCCAGTTGAGCAGGAACGTGAAATTTGACGAA GAGGACTTC
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Coding sequence (CDS) from alignment at H-paniculata_contig33495:247..1005-

>mRNA_H-paniculata_contig33495.8970.1 ID=mRNA_H-paniculata_contig33495.8970.1|Name=mRNA_H-paniculata_contig33495.8970.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1338bp|location=Sequence derived from alignment at H-paniculata_contig33495:247..1005- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCTCGGCGTGTGAGAAAGGGAAACCGTCCAAGCAGCCTGTGAAAAATTA
TCGAGAAAAGCGGACGACCGAGCCGTTGGAGCTGGTGCACACCGACATAG
TCGGACCGGTGGACAAGTCCTTCGGAGGATGTCGCTTCGCCATCATCTTC
GTTGACGACTACGGCAGAATGCGCAAAGTCTATACCTTGCGACAAACGTT
GGAGGCGCTATGGGCCCTGAAGCAATTCGAGAGGGACGTAGCGAGGGCGC
ACGGTTCGCGGATTAAGTACCTTCGGTCGGTTCAGGGAGGAGAATATACT
GGGAAGCCTTTTAGTGCTCGGCGTGTGAGAAAGGGAAACCGTCCAAGCAG
CCTGTGAAAAATTATCGAGAAAAGCGGACGACCGAGCCGTTGGAGCTGGT
GCACACCGACATAGTCGGACCGGTGGACAAGTCCTTCGGAGGATGTCGCT
TCGCCATCATCTTCGTTGACGACTACGGCAGAATGCGCAAAGTCTATACC
TTGCGACAAACGTTGGAGGCGCTATGGGCCCTGAAGCAATTCGAGAGGGA
CGTAGCGAGGGCGCACGGTTCGCGGATTAAGTACCTTCGGTCGGTTCAGG
GAGGAGAATATACTGGGAAGCCTTTTAGCATTTTCGAGATGGCAAGAGCC
AGCATGATCACCGCCAACATGGGTCCTAGATATTGGGCGGAAGCGGTGCG
CTCGGCAGTGTACTCCCTAAATCGTGCCCCAATGCGACCGCACAACGGAG
GAACATCGTACGAAAAGTGGCACGGAGAGACACCAAAGTTGGGCCACCTT
CGCGTCTTCGGCTGCACGGCGTATTTTATGTTCCAGTCGCAACAGAGACG
CAAGCTCGACGACATAGCATGGGCGGGGGTGTTTTGGGGGTACGACGAGG
ACAGCCCGAGTTATCGCATATTTATCCCGGAAAACAAGAGCGTCCAGTTG
AGCAGGAACGTGAAATTTGACGAAGAGGACTTCCATTTTCGAGATGGCAA
GAGCCAGCATGATCACCGCCAACATGGGTCCTAGATATTGGGCGGAAGCG
GTGCGCTCGGCAGTGTACTCCCTAAATCGTGCCCCAATGCGACCGCACAA
CGGAGGAACATCGTACGAAAAGTGGCACGGAGAGACACCAAAGTTGGGCC
ACCTTCGCGTCTTCGGCTGCACGGCGTATTTTATGTTCCAGTCGCAACAG
AGACGCAAGCTCGACGACATAGCATGGGCGGGGGTGTTTTGGGGGTACGA
CGAGGACAGCCCGAGTTATCGCATATTTATCCCGGAAAACAAGAGCGTCC
AGTTGAGCAGGAACGTGAAATTTGACGAAGAGGACTTC
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