mRNA_H-paniculata_contig3348.8967.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3348.8967.1
Unique NamemRNA_H-paniculata_contig3348.8967.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3348.8967.1 vs. uniprot
Match: A0A6H5JRQ7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRQ7_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 3.450e-9
Identity = 32/72 (44.44%), Postives = 46/72 (63.89%), Query Frame = 1 
Query:    7 RSEVLSDPASSEARQFRRRFRIPHVFFLGLVSLAKEKRFLSAEEDVAE------RQCIPVEPKILASLQVLN 204
            ++++L DP++ EA+QFRRRFR+P+ FFL LV   K   +     D  E      R+CIPVE K+LA L++L 
Sbjct:   72 KADLLQDPSTREAKQFRRRFRVPYPFFLSLVDEVKAGNWPGFTTDEFELGGRGTRRCIPVETKVLAVLRILG 143
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BLAST of mRNA_H-paniculata_contig3348.8967.1 vs. uniprot
Match: A0A6H5JP98_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP98_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 4.780e-9
Identity = 32/72 (44.44%), Postives = 47/72 (65.28%), Query Frame = 1 
Query:    7 RSEVLSDPASSEARQFRRRFRIPHVFFLGLVSLAKEKRFLSAEEDVAE------RQCIPVEPKILASLQVLN 204
            ++++L DP++ EA+QFRRRFR+P+ FFL LV   K  ++     D  E      R+CIPVE K+LA L++L 
Sbjct:   71 KADLLQDPSTREAKQFRRRFRVPYPFFLSLVDEVKAGKWPVFTTDEFELGGRGTRRCIPVEIKVLAVLRILG 142
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BLAST of mRNA_H-paniculata_contig3348.8967.1 vs. uniprot
Match: A0A6H5K8I3_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8I3_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 6.260e-9
Identity = 32/72 (44.44%), Postives = 46/72 (63.89%), Query Frame = 1 
Query:    7 RSEVLSDPASSEARQFRRRFRIPHVFFLGLVSLAKEKRFLSAEEDVAE------RQCIPVEPKILASLQVLN 204
            ++++L DP++ EA+QFRRRFR+P+ FFL LV   K   +     D  E      R+CIPVE K+LA L++L 
Sbjct:   72 KADLLQDPSTREAKQFRRRFRVPYPFFLSLVDEVKAGNWPGFTTDEFELGGRGTRRCIPVETKVLAVLRILG 143
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BLAST of mRNA_H-paniculata_contig3348.8967.1 vs. uniprot
Match: A0A6H5JV45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV45_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 2.630e-7
Identity = 30/59 (50.85%), Postives = 38/59 (64.41%), Query Frame = 1 
Query:   28 PASSEARQFRRRFRIPHVFFLGLVSLAKEKRFLSAEEDVAERQCIPVEPKILASLQVLN 204
            P+S EA+ FR  FR+PH FF   V L +   F +A  DVA RQC+P+E K+L  LQVL 
Sbjct:   64 PSSREAKAFRSDFRVPHEFFRHFVDLVRTV-FPTATRDVAGRQCVPLELKVLGVLQVLG 121
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BLAST of mRNA_H-paniculata_contig3348.8967.1 vs. uniprot
Match: A0A6H5JQ76_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ76_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 5.790e-7
Identity = 30/61 (49.18%), Postives = 40/61 (65.57%), Query Frame = 1 
Query:    1 MLRSEVLSDPASSEARQFRRRFRIPHVFFLGLVSLAKEKRFLSAEEDVAERQCIPVEPKIL 183
            ML    L +PAS +A+ FRRRFRIP+ FF  L+ L K+K F   ++ VA R  IPVE K++
Sbjct:  169 MLGETGLKEPASRDAKLFRRRFRIPYQFFTELMELVKKKWFPVRKKGVAGRMRIPVELKVM 229
[Close]
BLAST of mRNA_H-paniculata_contig3348.8967.1 vs. uniprot
Match: A0A6H5KLF8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLF8_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 1.520e-5
Identity = 29/68 (42.65%), Postives = 44/68 (64.71%), Query Frame = 1 
Query:    7 RSEVLSDPASSEARQFRRRFRIPHVFFLGLVSLAKEKR---FLSAEEDVA---ERQCIPVEPKILASL 192
            ++++L DP++ EA+QFRRRFR+P+ FFL LV   K  +   F + E ++     R+CIPVE  +L  L
Sbjct:   38 KADLLQDPSTREAKQFRRRFRVPYPFFLSLVDGVKAGKWPGFTTNEFELGGRGTRRCIPVEIDVLRIL 105
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3348.8967.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JRQ7_9PHAE3.450e-944.44Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JP98_9PHAE4.780e-944.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8I3_9PHAE6.260e-944.44Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV45_9PHAE2.630e-750.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQ76_9PHAE5.790e-749.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLF8_9PHAE1.520e-542.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3348contigH-paniculata_contig3348:4845..6373 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size278
Cds size210
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3348.8967.1prot_H-paniculata_contig3348.8967.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3348 4845..6305 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930034.10398-CDS-H-paniculata_contig3348:4844..50211622930034.10398-CDS-H-paniculata_contig3348:4844..5021Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3348 4845..5021 +
1691481119.1898558-CDS-H-paniculata_contig3348:4844..50211691481119.1898558-CDS-H-paniculata_contig3348:4844..5021Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3348 4845..5021 +
1622930034.1195724-CDS-H-paniculata_contig3348:6272..63051622930034.1195724-CDS-H-paniculata_contig3348:6272..6305Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3348 6273..6305 +
1691481119.1979904-CDS-H-paniculata_contig3348:6272..63051691481119.1979904-CDS-H-paniculata_contig3348:6272..6305Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3348 6273..6305 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930034.1320908-UTR-H-paniculata_contig3348:6305..63731622930034.1320908-UTR-H-paniculata_contig3348:6305..6373Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3348 6306..6373 +
1691481119.2075682-UTR-H-paniculata_contig3348:6305..63731691481119.2075682-UTR-H-paniculata_contig3348:6305..6373Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3348 6306..6373 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3348.8967.1

>prot_H-paniculata_contig3348.8967.1 ID=prot_H-paniculata_contig3348.8967.1|Name=mRNA_H-paniculata_contig3348.8967.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=70bp
MLRSEVLSDPASSEARQFRRRFRIPHVFFLGLVSLAKEKRFLSAEEDVAE
RQCIPVEPKILASLQVLNG*
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mRNA from alignment at H-paniculata_contig3348:4845..6373+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3348.8967.1 ID=mRNA_H-paniculata_contig3348.8967.1|Name=mRNA_H-paniculata_contig3348.8967.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1529bp|location=Sequence derived from alignment at H-paniculata_contig3348:4845..6373+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGCGTTCTGAGGTCCTTTCCGATCCAGCTTCAAGCGAGGCCAGGCA
ATTTAGGCGCCGTTTCCGTATCCCTCACGTGTTCTTCCTCGGGCTGGTAA
GCTTAGCGAAGGAGAAGAGGTTCCTCTCTGCAGAAGAGGATGTCGCAGAA
CGTCAGTGCATCCCAGTTGAGCCGAAGGTGGGTCGGTATCTCTAGGTTGA
CAACTGTGCAATGACAATGGAGGTTCTGGTTTGGTGATGCTGCAGTTGAC
TATATCTCAAGTGCATGATGCTGGGAAGTACGGTGTCGTAACTTTACCTA
ACTATACCGTACTGTACTATATTAGTAGTGTACAGTACTGCACAGTCTGT
AGTACTATATTGTAGTGTATAGTACAGTTGTACTATACCCGACTATACTG
TCTGTACTCTACTGTGGAGTACTGGACTAACTCCACTGTACAATACTACA
CTGCACACTGCTGCACCGAACCGCACTGTACTCCACCGTGCTGTATGACG
TTGAGTTGTTCACGCCCATCGACCTCTGCCTGCTGTTATATCTGTGCATG
GTTGCGCAACAACACAAGCTGCAAACGAATACCTGCTGTTTTTTCTCTCA
GTGCTCATTGCGACCTAACTGTTTAGTTACGCTGCTAGGTATAATCTTGT
CTGCAAGTGAGTCTTTACATTTTCCACGTTTAAAAGCCTTGAAGGCTCAT
AAAGCTGGAGAAATACCGCACCAAACGAACCTAAGTCCGATTGGTGCGGA
AAATATGTCGAAGTCACAAAGGTTAAATCCCACAAAAACATTTAAATTAA
AATCAACGTCGGTTTTGCTGCGTTTAATTATCTGTGTGGCCGTTGTCTTC
ATTTTTTTTAATTATGTGTGTGGCTAAAGTAACAGCCTGGTTATGTTACG
GTAATACCGTCGATCCCACCGTTCTCAAGTCGGCGAATGATGTGGCACTT
AACCTGCAGGTTGAATTGTGGCACAAAATCCCTGCACAACATCGCTGAGA
GACAACTGTTCTGTGGTATGCTTTATAGTCTCTACAGCCACCTCCCTCGA
TCAAATTACAGATATCGCTCTCTGCTGTGCGGGTCTTCTGTGTTTATCCC
CCGCCATGATATCGTGACACTGTTTGGCATTGCATGCCGGGACTACTCCG
TAAGCGCAGTCAGTCAGCGATATCGTGGACTATTGGTTCCTAGAACACGC
AATGAAAATATGTGATGGTACCGTCGTACATGTGCGCACTACCTCGCGAG
AGGATCACTCTAGAGTCGACTGACGTACCAGGGACGATAGGTGCACGACG
TGAAACGTTGCCCATGTTTTGCAGCCAATGGCCAACTACCTGTCATGATC
GGTCACACAAGCTCACGTCCTCAGCCAAGCGAAACCTAACATGTTTTGCG
TGTCCCCCCACCCTCCCCGTCGTACCAGATTCTCGCTTCCCTGCAGGTGC
TGAATGGGTAGGAGGAACTGCTTTGACGACCTCTCCCAGTTCTCCCTCAT
GAGCGAGTCGACGGCACAAGTCACATTCC
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Coding sequence (CDS) from alignment at H-paniculata_contig3348:4845..6373+

>mRNA_H-paniculata_contig3348.8967.1 ID=mRNA_H-paniculata_contig3348.8967.1|Name=mRNA_H-paniculata_contig3348.8967.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at H-paniculata_contig3348:4845..6373+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGCGTTCTGAGGTCCTTTCCGATCCAGCTTCAAGCGAGGCCAGGCA
ATTTAGGCGCCGTTTCCGTATCCCTCACGTGTTCTTCCTCGGGCTGGTAA
GCTTAGCGAAGGAGAAGAGGTTCCTCTCTGCAGAAGAGGATGTCGCAGAA
CGTCAGTGCATCCCAGTTGAGCCGAAGATGCTGCGTTCTGAGGTCCTTTC
CGATCCAGCTTCAAGCGAGGCCAGGCAATTTAGGCGCCGTTTCCGTATCC
CTCACGTGTTCTTCCTCGGGCTGGTAAGCTTAGCGAAGGAGAAGAGGTTC
CTCTCTGCAGAAGAGGATGTCGCAGAACGTCAGTGCATCCCAGTTGAGCC
GAAGATTCTCGCTTCCCTGCAGGTGCTGAATGGGTAGATTCTCGCTTCCC
TGCAGGTGCTGAATGGGTAG
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