mRNA_H-paniculata_contig33477.8966.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig33477.8966.1
Unique NamemRNA_H-paniculata_contig33477.8966.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig33477.8966.1 vs. uniprot
Match: A0A6G0W3L3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W3L3_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 1.720e-8
Identity = 27/42 (64.29%), Postives = 31/42 (73.81%), Query Frame = -3 
Query:    2 SSDYGLQFAHIKSESLVIAHQDATVNMSLGLAHTARNILGVD 127
            +SDYGLQ AHIK ESLVIA Q   VNM L   HTAR+I+ V+
Sbjct:   30 TSDYGLQLAHIKLESLVIAKQHVAVNMLLDFVHTARHIMEVN 71
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BLAST of mRNA_H-paniculata_contig33477.8966.1 vs. uniprot
Match: A0A554KYQ1_9BACT (Uncharacterized protein n=1 Tax=Microgenomates group bacterium Gr01-1014_7 TaxID=2017209 RepID=A0A554KYQ1_9BACT)

HSP 1 Score: 50.4 bits (119), Expect = 4.720e-7
Identity = 21/32 (65.62%), Postives = 25/32 (78.12%), Query Frame = -2 
Query:   30 FGLWAAVRPHKVGITSNRASGCHGEHVTGSCT 125
            F L +A+RPH+VGI SNR S C GE+V GSCT
Sbjct:   39 FRLGSAIRPHEVGIASNRGSACRGEYVLGSCT 70
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BLAST of mRNA_H-paniculata_contig33477.8966.1 vs. uniprot
Match: A0A2M6YQH1_9BACT (Uncharacterized protein n=1 Tax=Candidatus Shapirobacteria bacterium CG07_land_8_20_14_0_80_39_12 TaxID=1974480 RepID=A0A2M6YQH1_9BACT)

HSP 1 Score: 49.7 bits (117), Expect = 7.740e-7
Identity = 21/33 (63.64%), Postives = 25/33 (75.76%), Query Frame = -2 
Query:   27 FGLWAAVRPHKVGITSNRASGCHGEHVTGSCTH 125
            F LWA +RPH+VGI SNR S   GE+V GSCT+
Sbjct:   39 FRLWAEIRPHEVGIGSNRGSAGRGEYVLGSCTN 71
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BLAST of mRNA_H-paniculata_contig33477.8966.1 vs. uniprot
Match: F9RN42_9VIBR (Uncharacterized protein n=2 Tax=Vibrio TaxID=662 RepID=F9RN42_9VIBR)

HSP 1 Score: 47.0 bits (110), Expect = 5.640e-6
Identity = 24/41 (58.54%), Postives = 29/41 (70.73%), Query Frame = -3 
Query:    5 SSDYGLQFAHIKSESLVIAHQDATVNMSLGLAHTARNILGV 127
            S D+ LQ   +KSESLVI  Q+ATVN   GL HTAR+ +GV
Sbjct:    4 SPDWSLQLDSMKSESLVIVDQNATVNTFPGLVHTARHTMGV 44
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BLAST of mRNA_H-paniculata_contig33477.8966.1 vs. uniprot
Match: UPI00005F5302 (hypothetical protein n=3 Tax=Vibrio TaxID=662 RepID=UPI00005F5302)

HSP 1 Score: 47.0 bits (110), Expect = 8.210e-6
Identity = 24/41 (58.54%), Postives = 29/41 (70.73%), Query Frame = -3 
Query:    5 SSDYGLQFAHIKSESLVIAHQDATVNMSLGLAHTARNILGV 127
            S D+ LQ   +KSESLVI  Q+ATVN   GL HTAR+ +GV
Sbjct:   21 SPDWSLQLDSMKSESLVIVDQNATVNTFPGLVHTARHTMGV 61
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BLAST of mRNA_H-paniculata_contig33477.8966.1 vs. uniprot
Match: A0A139DFB7_9GAMM (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A139DFB7_9GAMM)

HSP 1 Score: 47.0 bits (110), Expect = 9.610e-6
Identity = 24/41 (58.54%), Postives = 29/41 (70.73%), Query Frame = -3 
Query:    5 SSDYGLQFAHIKSESLVIAHQDATVNMSLGLAHTARNILGV 127
            S D+ LQ   +KSESLVI  Q+ATVN   GL HTAR+ +GV
Sbjct:   28 SPDWSLQLDSMKSESLVIVDQNATVNTFPGLVHTARHTMGV 68
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BLAST of mRNA_H-paniculata_contig33477.8966.1 vs. uniprot
Match: A0A822TNY8_SHISO (Uncharacterized protein n=4 Tax=Enterobacteriaceae TaxID=543 RepID=A0A822TNY8_SHISO)

HSP 1 Score: 47.0 bits (110), Expect = 1.420e-5
Identity = 24/41 (58.54%), Postives = 29/41 (70.73%), Query Frame = -3 
Query:    5 SSDYGLQFAHIKSESLVIAHQDATVNMSLGLAHTARNILGV 127
            S D+ LQ   +KSESLVI  Q+ATVN   GL HTAR+ +GV
Sbjct:   46 SPDWSLQLDSMKSESLVIVDQNATVNTFPGLVHTARHTMGV 86
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BLAST of mRNA_H-paniculata_contig33477.8966.1 vs. uniprot
Match: A0A0M3KKD4_ANISI (Uncharacterized protein n=1 Tax=Anisakis simplex TaxID=6269 RepID=A0A0M3KKD4_ANISI)

HSP 1 Score: 47.0 bits (110), Expect = 1.540e-5
Identity = 24/41 (58.54%), Postives = 29/41 (70.73%), Query Frame = -3 
Query:    5 SSDYGLQFAHIKSESLVIAHQDATVNMSLGLAHTARNILGV 127
            S D+ LQ   +KSESLVI  Q+ATVN   GL HTAR+ +GV
Sbjct:   21 SPDWSLQLDSMKSESLVIVDQNATVNTFPGLVHTARHTMGV 61
[Close]
BLAST of mRNA_H-paniculata_contig33477.8966.1 vs. uniprot
Match: A0A2S7V079_9GAMM (Uncharacterized protein n=1 Tax=Psychrosphaera saromensis TaxID=716813 RepID=A0A2S7V079_9GAMM)

HSP 1 Score: 47.0 bits (110), Expect = 1.670e-5
Identity = 24/41 (58.54%), Postives = 29/41 (70.73%), Query Frame = -3 
Query:    5 SSDYGLQFAHIKSESLVIAHQDATVNMSLGLAHTARNILGV 127
            S D+ LQ   +KSESLVI  Q+ATVN   GL HTAR+ +GV
Sbjct:   54 SPDWSLQLDSMKSESLVIVDQNATVNTFPGLVHTARHTMGV 94
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BLAST of mRNA_H-paniculata_contig33477.8966.1 vs. uniprot
Match: A0A182EY67_ONCOC (Uncharacterized protein n=1 Tax=Onchocerca ochengi TaxID=42157 RepID=A0A182EY67_ONCOC)

HSP 1 Score: 47.0 bits (110), Expect = 1.850e-5
Identity = 24/41 (58.54%), Postives = 29/41 (70.73%), Query Frame = -3 
Query:    5 SSDYGLQFAHIKSESLVIAHQDATVNMSLGLAHTARNILGV 127
            S D+ LQ   +KSESLVI  Q+ATVN   GL HTAR+ +GV
Sbjct:   60 SPDWSLQLDSMKSESLVIVDQNATVNTFPGLVHTARHTMGV 100
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig33477.8966.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6G0W3L3_9STRA1.720e-864.29Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A554KYQ1_9BACT4.720e-765.63Uncharacterized protein n=1 Tax=Microgenomates gro... [more]
A0A2M6YQH1_9BACT7.740e-763.64Uncharacterized protein n=1 Tax=Candidatus Shapiro... [more]
F9RN42_9VIBR5.640e-658.54Uncharacterized protein n=2 Tax=Vibrio TaxID=662 R... [more]
UPI00005F53028.210e-658.54hypothetical protein n=3 Tax=Vibrio TaxID=662 RepI... [more]
A0A139DFB7_9GAMM9.610e-658.54Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]
A0A822TNY8_SHISO1.420e-558.54Uncharacterized protein n=4 Tax=Enterobacteriaceae... [more]
A0A0M3KKD4_ANISI1.540e-558.54Uncharacterized protein n=1 Tax=Anisakis simplex T... [more]
A0A2S7V079_9GAMM1.670e-558.54Uncharacterized protein n=1 Tax=Psychrosphaera sar... [more]
A0A182EY67_ONCOC1.850e-558.54Uncharacterized protein n=1 Tax=Onchocerca ochengi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig33477contigH-paniculata_contig33477:2168..2296 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size129
Cds size129
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930034.0322232-CDS-H-paniculata_contig33477:2167..22961622930034.0322232-CDS-H-paniculata_contig33477:2167..2296Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33477 2168..2296 +
1691481119.1813724-CDS-H-paniculata_contig33477:2167..22961691481119.1813724-CDS-H-paniculata_contig33477:2167..2296Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33477 2168..2296 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig33477.8966.1prot_H-paniculata_contig33477.8966.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig33477 2168..2296 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig33477.8966.1

>prot_H-paniculata_contig33477.8966.1 ID=prot_H-paniculata_contig33477.8966.1|Name=mRNA_H-paniculata_contig33477.8966.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=43bp
GQLPGCYGRCVQDPVTCSPWHPDARLLVIPTLCGRTAAHNPN*
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mRNA from alignment at H-paniculata_contig33477:2168..2296+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig33477.8966.1 ID=mRNA_H-paniculata_contig33477.8966.1|Name=mRNA_H-paniculata_contig33477.8966.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=129bp|location=Sequence derived from alignment at H-paniculata_contig33477:2168..2296+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTCAACTCCCAGGATGTTACGGGCGGTGTGTGCAAGACCCAGTGACATG
TTCACCGTGGCATCCTGATGCGCGATTACTAGTGATTCCGACTTTATGTG
GGCGAACTGCAGCCCATAATCCGAACTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig33477:2168..2296+

>mRNA_H-paniculata_contig33477.8966.1 ID=mRNA_H-paniculata_contig33477.8966.1|Name=mRNA_H-paniculata_contig33477.8966.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=258bp|location=Sequence derived from alignment at H-paniculata_contig33477:2168..2296+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTCAACTCCCAGGATGTTACGGGCGGTGTGTGCAAGACCCAGTGACATG
TTCACCGTGGCATCCTGATGCGCGATTACTAGTGATTCCGACTTTATGTG
GGCGAACTGCAGCCCATAATCCGAACTAAGGTCAACTCCCAGGATGTTAC
GGGCGGTGTGTGCAAGACCCAGTGACATGTTCACCGTGGCATCCTGATGC
GCGATTACTAGTGATTCCGACTTTATGTGGGCGAACTGCAGCCCATAATC
CGAACTAA
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