mRNA_H-paniculata_contig33470.8965.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig33470.8965.1
Unique NamemRNA_H-paniculata_contig33470.8965.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig33470.8965.1 vs. uniprot
Match: A0A6H5JWI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI3_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 1.180e-20
Identity = 52/125 (41.60%), Postives = 72/125 (57.60%), Query Frame = 1
Query:    1 RTSSESHVILECHNEDACIGGTNTENYCRTGYRGPYCAVCAEDYAPGVLYSCRKCSAASFRWAVGLTVVIVLVVILGVTTFVLDLVRVEHGSTEEQVRARGFLERKWYYFCA-LLVKAFPLTTTR 372
            RTS+ES  +L+C+ E+ACIGGT+   YC+ GYRG YCAVC E YA G  +SC  C   + R A+G +V +  V ++G+   + DLVRV      +     G    K    C   +VKA PLT+ +
Sbjct:  621 RTSAESQNVLKCYQEEACIGGTDVSQYCQEGYRGAYCAVCDEGYASGYQFSCSICDGENLRSAIGTSVALFFVALVGIALVIADLVRVVDEVEPDTASTWG----KRLTSCRDRIVKAVPLTSIK 741          
BLAST of mRNA_H-paniculata_contig33470.8965.1 vs. uniprot
Match: D7FUB6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUB6_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 5.710e-17
Identity = 35/65 (53.85%), Postives = 45/65 (69.23%), Query Frame = 1
Query:    1 RTSSESHVILECHNEDACIGGTNTENYCRTGYRGPYCAVCAEDYAPGVLYSCRKCSAASFRWAVG 195
            RTS+ES +ILECH E+AC+GG+    YC TGY+G YCA C E YA G+ YSC+ C   +   A+G
Sbjct:  398 RTSAESDIILECHREEACVGGSTAGEYCATGYQGAYCAACEEGYASGLQYSCKSCGGDNATSAIG 462          
BLAST of mRNA_H-paniculata_contig33470.8965.1 vs. uniprot
Match: D8LRF7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRF7_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 1.030e-10
Identity = 40/95 (42.11%), Postives = 56/95 (58.95%), Query Frame = 1
Query:    1 RTSSESHVILECHNEDACIGG------TNTENYCRTGYRGPYCAVCAEDYAPGVLYSCRKCSAASFRWAVGLTVVIVL---VVILGVTTFVLDLV 258
            R++  S  I EC N+DACIG       ++  +YC TGY GPYCAVC + Y  GV ++C  C  +   WA G+ VV+ L   V+++GV   + DLV
Sbjct:  468 RSTETSTNIRECFNDDACIGSEVSQRISSPNDYCDTGYMGPYCAVCMDGYTTGVSHTCHSCDGS--YWA-GMVVVMALTGVVLVVGVVIVLNDLV 559          
BLAST of mRNA_H-paniculata_contig33470.8965.1 vs. uniprot
Match: A0A6H5JCK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK8_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 4.470e-9
Identity = 25/67 (37.31%), Postives = 38/67 (56.72%), Query Frame = 1
Query:    1 RTSSESHVILECHNEDACIGGTN---TENYCRTGYRGPYCAVCAEDYAPGVLYSCRKCSAASFRWAV 192
            R+  ES  +L C + ++C G T+   +++YC +GY GPYCA C   Y  G+  +C  C    FRW +
Sbjct:  415 RSGKESATVLACIHAESCAGATHVSTSDDYCSSGYEGPYCASCQAGYGTGIGNTCHSCDGTRFRWLI 481          
BLAST of mRNA_H-paniculata_contig33470.8965.1 vs. uniprot
Match: D7G1E0_ECTSI (EsV-1-12 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1E0_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 1.140e-8
Identity = 37/95 (38.95%), Postives = 53/95 (55.79%), Query Frame = 1
Query:   34 CHNEDACIGG-TNTENYCRTGYRGPYCAVCAEDYAPGVLYSCRKCSAASFRWAVGLTVVIVLVVILGVTTFVLDLVRVEHGSTEEQVRARGFLER 315
            CH +    GG T  +N+C +GY+GPYCAVC  DY+P + ++C  CS++  R   GLTV+  + VI  VT F +  +     STE +    G   R
Sbjct:  876 CHFKGNSAGGKTGADNFCASGYQGPYCAVCKTDYSPSLAHTCTHCSSSRRR---GLTVIAAIAVI--VTVFAIVAIFQYMLSTEHEDGILGCFRR 965          
BLAST of mRNA_H-paniculata_contig33470.8965.1 vs. uniprot
Match: A0A836CD27_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD27_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 2.100e-8
Identity = 29/71 (40.85%), Postives = 43/71 (60.56%), Query Frame = 1
Query:   22 VILECHNEDACIGG---------TNTENYCRTGYRGPYCAVCAEDYAPGVLYSCRKCSAASFRWAVGLTVV 207
            ++ +C N+ AC G          T+T+ YC  GYRGPYCAVCA+ Y     Y+C++CS+ +   A+ LTV+
Sbjct:  574 IVRKCWNKGACAGAPSAAAAVDVTSTDAYCAPGYRGPYCAVCADGYTNFFRYTCKECSSGA---AIALTVI 641          
BLAST of mRNA_H-paniculata_contig33470.8965.1 vs. uniprot
Match: A0A835ZLE8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLE8_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 3.880e-8
Identity = 34/97 (35.05%), Postives = 52/97 (53.61%), Query Frame = 1
Query:    1 RTSSESHVILECHNEDACIGGT---NTENYCRTGYRGPYCAVCAEDYAPGVLYSCRKCSAASFRWAVGLTVVIVLVVILGVTTFVLDLVRVEHGSTE 282
            R +    V+ +C N  AC GG    + + YC  GY+GPYCAVC+++Y   V Y C +C+      AV +  V++ VV +     +  LVR   G++E
Sbjct:  569 RETLTQEVVRQCWNSAACSGGAAAASVDEYCAAGYKGPYCAVCSDNYGALVGYRCVECT----NTAVAIAFVVMAVVAVTAVFLLWVLVRAVGGASE 661          
BLAST of mRNA_H-paniculata_contig33470.8965.1 vs. uniprot
Match: D7FRG6_ECTSI (Polymorphic membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRG6_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 7.360e-8
Identity = 25/67 (37.31%), Postives = 35/67 (52.24%), Query Frame = 1
Query:    1 RTSSESHVILECHNEDACIGGTNT---ENYCRTGYRGPYCAVCAEDYAPGVLYSCRKCSAASFRWAV 192
            R+  ES  +L C + ++C G T     E+YC +GY GPYCA C   Y  G+  +C  C     RW +
Sbjct:  864 RSGKESSTVLACIHAESCAGATQVSTAEDYCSSGYEGPYCASCQAGYGTGIGNTCHPCDDTRSRWLI 930          
BLAST of mRNA_H-paniculata_contig33470.8965.1 vs. uniprot
Match: A0A835YZD4_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZD4_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 1.340e-7
Identity = 31/70 (44.29%), Postives = 39/70 (55.71%), Query Frame = 1
Query:    1 RTSSESHVILECHNEDACIGG----------TNTEN-YCRTGYRGPYCAVCAEDYAPGVLYSCRKCSAAS 177
            R S E  V+ +C  E AC GG           N  N YC+ GY GPYCAVCA+ +    LY C++CSA+S
Sbjct:  653 RGSEEYVVVHKCLRESACEGGRVYVAAGADSANAANGYCKDGYSGPYCAVCADGFVSTGLYECQQCSASS 722          
BLAST of mRNA_H-paniculata_contig33470.8965.1 vs. uniprot
Match: A0A835Z2L6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2L6_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.810e-7
Identity = 35/94 (37.23%), Postives = 45/94 (47.87%), Query Frame = 1
Query:   22 VILECHNEDACIGGT-------------------NTENYCRTGYRGPYCAVCAEDYAPGVLYSCRKCSAASFRWAVGLTVVIVLVVILGVTTFV 246
            +I  C N  AC+GGT                   +++ YC  GYRGPYCAVCA+ YA    Y C +C+A      V   VV+  VV LG+   V
Sbjct:  514 IIRACPNRQACVGGTGATSIGVWTQEAGVWSLGWSSDAYCAAGYRGPYCAVCADGYAAVTGYKCVECTAGIVGAVVVGMVVLFAVVALGLWVLV 607          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig33470.8965.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5JWI3_9PHAE1.180e-2041.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUB6_ECTSI5.710e-1753.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LRF7_ECTSI1.030e-1042.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JCK8_9PHAE4.470e-937.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1E0_ECTSI1.140e-838.95EsV-1-12 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
A0A836CD27_9STRA2.100e-840.85Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZLE8_9STRA3.880e-835.05Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FRG6_ECTSI7.360e-837.31Polymorphic membrane protein n=1 Tax=Ectocarpus si... [more]
A0A835YZD4_9STRA1.340e-744.29Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A835Z2L6_9STRA1.810e-737.23Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig33470contigH-paniculata_contig33470:1283..1992 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.5
Seed ortholog evalue2.1e-11
Seed eggNOG ortholog2880.D7G2Z8
Hectar predicted targeting categorysignal anchor
EggNOG OGs2BFIX@1,2S176@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size404
Cds size402
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930033.975155-CDS-H-paniculata_contig33470:1282..13881622930033.975155-CDS-H-paniculata_contig33470:1282..1388Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33470 1283..1388 +
1691481119.160867-CDS-H-paniculata_contig33470:1282..13881691481119.160867-CDS-H-paniculata_contig33470:1282..1388Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33470 1283..1388 +
1622930033.9885504-CDS-H-paniculata_contig33470:1694..19901622930033.9885504-CDS-H-paniculata_contig33470:1694..1990Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33470 1695..1990 +
1691481119.1733246-CDS-H-paniculata_contig33470:1694..19901691481119.1733246-CDS-H-paniculata_contig33470:1694..1990Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33470 1695..1990 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig33470.8965.1prot_H-paniculata_contig33470.8965.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig33470 1283..1990 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig33470.8965.1

>prot_H-paniculata_contig33470.8965.1 ID=prot_H-paniculata_contig33470.8965.1|Name=mRNA_H-paniculata_contig33470.8965.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=134bp
RTSSESHVILECHNEDACIGGTNTENYCRTGYRGPYCAVCAEDYAPGVLY
SCRKCSAASFRWAVGLTVVIVLVVILGVTTFVLDLVRVEHGSTEEQVRAR
GFLERKWYYFCALLVKAFPLTTTRSSWSFGRSSP
back to top

mRNA from alignment at H-paniculata_contig33470:1283..1992+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig33470.8965.1 ID=mRNA_H-paniculata_contig33470.8965.1|Name=mRNA_H-paniculata_contig33470.8965.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=710bp|location=Sequence derived from alignment at H-paniculata_contig33470:1283..1992+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCACCTCGAGCGAGAGCCATGTAATTCTCGAGTGCCACAACGAGGACGC CTGCATTGGTGGCACCAACACTGAGAACTACTGCCGAACTGGTTACCGAG GTCCTTGTAAGTGGTACCGACGCCAGACCACTCGCGTGTTGTTGGTACAG CGGCATAGTGGCTTGTAGCAGGCAACGTAGCGGGAAGTATGTGTTTTTGA CAGTGCTCTATATAGTTTTACGGCGACAACGTAGGATGCGATCGAGGTTT CTCCCGGGCCGTAATAAACCGCACGCATTAAGGTCGGCACCATCTTTTAT ATAGCTGTATCGTCCTACACGTGAATACGCTGTGTCCCCAGCTTAATCTG TGACTGAAATGCTCGACTTTCATGTAACCGCCCCTTGTCACGGTGCCCCA TTTCCCCTGTAGACTGTGCAGTGTGTGCGGAAGACTATGCACCAGGCGTA TTGTACAGCTGTCGCAAATGCTCCGCAGCAAGCTTTCGATGGGCCGTGGG GTTGACAGTAGTGATAGTGTTGGTAGTGATTCTAGGTGTCACCACATTCG TGCTGGACTTAGTACGAGTTGAGCATGGCAGCACGGAGGAGCAGGTGAGG GCGAGAGGATTCTTGGAGCGAAAGTGGTATTATTTCTGTGCCCTTCTCGT GAAGGCGTTTCCCCTGACCACCACAAGATCGTCGTGGTCGTTTGGCAGAT CGTCACCCAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig33470:1283..1992+

>mRNA_H-paniculata_contig33470.8965.1 ID=mRNA_H-paniculata_contig33470.8965.1|Name=mRNA_H-paniculata_contig33470.8965.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=804bp|location=Sequence derived from alignment at H-paniculata_contig33470:1283..1992+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCACCTCGAGCGAGAGCCATGTAATTCTCGAGTGCCACAACGAGGACGC
CTGCATTGGTGGCACCAACACTGAGAACTACTGCCGAACTGGTTACCGAG
GTCCTTCGCACCTCGAGCGAGAGCCATGTAATTCTCGAGTGCCACAACGA
GGACGCCTGCATTGGTGGCACCAACACTGAGAACTACTGCCGAACTGGTT
ACCGAGGTCCTTACTGTGCAGTGTGTGCGGAAGACTATGCACCAGGCGTA
TTGTACAGCTGTCGCAAATGCTCCGCAGCAAGCTTTCGATGGGCCGTGGG
GTTGACAGTAGTGATAGTGTTGGTAGTGATTCTAGGTGTCACCACATTCG
TGCTGGACTTAGTACGAGTTGAGCATGGCAGCACGGAGGAGCAGGTGAGG
GCGAGAGGATTCTTGGAGCGAAAGTGGTATTATTTCTGTGCCCTTCTCGT
GAAGGCGTTTCCCCTGACCACCACAAGATCGTCGTGGTCGTTTGGCAGAT
CGTCACCCACTGTGCAGTGTGTGCGGAAGACTATGCACCAGGCGTATTGT
ACAGCTGTCGCAAATGCTCCGCAGCAAGCTTTCGATGGGCCGTGGGGTTG
ACAGTAGTGATAGTGTTGGTAGTGATTCTAGGTGTCACCACATTCGTGCT
GGACTTAGTACGAGTTGAGCATGGCAGCACGGAGGAGCAGGTGAGGGCGA
GAGGATTCTTGGAGCGAAAGTGGTATTATTTCTGTGCCCTTCTCGTGAAG
GCGTTTCCCCTGACCACCACAAGATCGTCGTGGTCGTTTGGCAGATCGTC
ACCC
back to top