mRNA_H-paniculata_contig3346.8963.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3346.8963.1
Unique NamemRNA_H-paniculata_contig3346.8963.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3346.8963.1 vs. uniprot
Match: D7G096_ECTSI (Ubiquitin-conjugating enzyme type E2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G096_ECTSI)

HSP 1 Score: 327 bits (839), Expect = 4.390e-103
Identity = 156/162 (96.30%), Postives = 159/162 (98.15%), Query Frame = 1 
Query:  418 MLSMSPSKRRDTDMMKLMMSDFEVHIPDESSMHDFLVAFPGPEDTPYQGGIWKVHVTLPKEYPFKSPSIGFENRMFHPNVDELSGSVCLDVINQTWSPMFDLVNIFKLFIPQLLSYPNPTDPLNGEAAALLMRDPDAYAKRIKECVRLHASDPVHLDGTPVV 903
            MLSMSPSKRRDTDMMKLMMSDFEVHIPDESSMHDFLVAFPGPEDTPYQGG+WKVHVTLPKEYPFKSPSIGFENRMFHPNVDE+SGSVCLDVINQTWSPMFDLVNIFKLFIPQLLSYPNPTDPLNGEAAALLMRDP AY  RI+ECVRLHASDPVHLDGTPVV
Sbjct:    1 MLSMSPSKRRDTDMMKLMMSDFEVHIPDESSMHDFLVAFPGPEDTPYQGGVWKVHVTLPKEYPFKSPSIGFENRMFHPNVDEMSGSVCLDVINQTWSPMFDLVNIFKLFIPQLLSYPNPTDPLNGEAAALLMRDPKAYDNRIRECVRLHASDPVHLDGTPVV 162
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BLAST of mRNA_H-paniculata_contig3346.8963.1 vs. uniprot
Match: A0A835Z4W6_9STRA (Ubiquitin-conjugating enzyme/RWD-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4W6_9STRA)

HSP 1 Score: 265 bits (677), Expect = 2.950e-80
Identity = 120/153 (78.43%), Postives = 139/153 (90.85%), Query Frame = 1 
Query:  430 SPSKRRDTDMMKLMMSDFEVHIPDESSMHDFLVAFPGPEDTPYQGGIWKVHVTLPKEYPFKSPSIGFENRMFHPNVDELSGSVCLDVINQTWSPMFDLVNIFKLFIPQLLSYPNPTDPLNGEAAALLMRDPDAYAKRIKECVRLHASDPVHLD 888
            SP+KRRD DMMKLMMSDF VHIPDE SMHDF+VAFPGP +TPY+GG+WKVHV+LP+EYP++SPSIGFENR++HPNVDE+SGSVCLDVINQTWSPMFDLVNIF +F+PQLL+YPNPTDPLN EAAAL++RDP AY  RI+E VRLHAS  +  D
Sbjct:    3 SPTKRRDMDMMKLMMSDFAVHIPDECSMHDFMVAFPGPANTPYEGGVWKVHVSLPREYPYRSPSIGFENRIYHPNVDEMSGSVCLDVINQTWSPMFDLVNIFTIFLPQLLAYPNPTDPLNSEAAALMLRDPKAYGARIRESVRLHASRAITFD 155
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BLAST of mRNA_H-paniculata_contig3346.8963.1 vs. uniprot
Match: A0A7S2AI60_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AI60_9STRA)

HSP 1 Score: 253 bits (645), Expect = 8.380e-76
Identity = 117/153 (76.47%), Postives = 136/153 (88.89%), Query Frame = 1 
Query:  427 MSPSKRRDTDMMKLMMSDFEVHIPDESSMHDFLVAFPGPEDTPYQGGIWKVHVTLPKEYPFKSPSIGFENRMFHPNVDELSGSVCLDVINQTWSPMFDLVNIFKLFIPQLLSYPNPTDPLNGEAAALLMRDPDAYAKRIKECVRLHASDPVHL 885
            ++P+KRR  DMMKLMMSD+EV+IPDESSMHDF V F GP DTPY+GG+WK+HVTLP  YPFKSPSIGF+NRMFHPNVD++SGSVCLDVINQTWSPMF+LVNIF++F+P LL YPNPTDPLNGEAAAL+MRDPDAYA RI+E VR  A+  + L
Sbjct:    5 VTPNKRRHQDMMKLMMSDYEVNIPDESSMHDFFVKFEGPPDTPYEGGVWKIHVTLPPAYPFKSPSIGFKNRMFHPNVDDISGSVCLDVINQTWSPMFNLVNIFEVFLPHLLRYPNPTDPLNGEAAALMMRDPDAYALRIREHVRQFATARIDL 157
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BLAST of mRNA_H-paniculata_contig3346.8963.1 vs. uniprot
Match: A0A7S2BA17_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BA17_9STRA)

HSP 1 Score: 247 bits (630), Expect = 1.330e-72
Identity = 117/165 (70.91%), Postives = 137/165 (83.03%), Query Frame = 1 
Query:  397 GRCAAAKMLSMSPSKRRDTDMMKLMMSDFEVHIPDESSMHDFLVAFPGPEDTPYQGGIWKVHVTLPKEYPFKSPSIGFENRMFHPNVDELSGSVCLDVINQTWSPMFDLVNIFKLFIPQLLSYPNPTDPLNGEAAALLMRDPDAYAKRIKECVRLHASDPVHLDG 891
            GR  ++ +   +P+KRR  DMMKLMMSD+EV IPDES MHDF V F GP +TPY+ G WK+HVTLP +YPFKSPSIGF+NRMFHPNVD++SGSVCLDVINQTWSPMF+LVNIF+ F+P LL YPNPTDPLNGEAAALLMRDPDAY  RI++ VR +AS  + L G
Sbjct:   54 GRTMSSLVTPSNPNKRRHQDMMKLMMSDYEVLIPDESCMHDFFVKFDGPAETPYENGSWKIHVTLPADYPFKSPSIGFKNRMFHPNVDDISGSVCLDVINQTWSPMFNLVNIFEQFLPHLLRYPNPTDPLNGEAAALLMRDPDAYNLRIRDHVRQYASAKIDLVG 218
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BLAST of mRNA_H-paniculata_contig3346.8963.1 vs. uniprot
Match: A0A7S2W0L0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W0L0_9STRA)

HSP 1 Score: 245 bits (625), Expect = 1.540e-72
Identity = 112/152 (73.68%), Postives = 133/152 (87.50%), Query Frame = 1 
Query:  436 SKRRDTDMMKLMMSDFEVHIPDESSMHDFLVAFPGPEDTPYQGGIWKVHVTLPKEYPFKSPSIGFENRMFHPNVDELSGSVCLDVINQTWSPMFDLVNIFKLFIPQLLSYPNPTDPLNGEAAALLMRDPDAYAKRIKECVRLHASDPVHLDG 891
            SKR   DMMKLMMSD+EVHIP+E S+H+F V F GP +TPY+GG+WKVHV LP++YPFKSPSIGF+NR++HPNVD+LSGSVCLDVINQTWSPMF+LVNIF++F+PQLL YPNPTDPLNGEA AL+MRDP+AYA RI++ VR  AS  V L G
Sbjct:   20 SKRMHRDMMKLMMSDYEVHIPNEQSVHEFFVKFHGPAETPYEGGVWKVHVMLPRDYPFKSPSIGFKNRIYHPNVDDLSGSVCLDVINQTWSPMFNLVNIFEIFLPQLLRYPNPTDPLNGEAGALMMRDPEAYASRIRDYVRSFASSTVELKG 171
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BLAST of mRNA_H-paniculata_contig3346.8963.1 vs. uniprot
Match: A0A2D4C6N9_PYTIN (Ubiquitin-conjugating enzyme E2, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C6N9_PYTIN)

HSP 1 Score: 237 bits (605), Expect = 1.710e-70
Identity = 107/153 (69.93%), Postives = 135/153 (88.24%), Query Frame = 1 
Query:  427 MSPSKRRDTDMMKLMMSDFEVHIPDESSMHDFLVAFPGPEDTPYQGGIWKVHVTLPKEYPFKSPSIGFENRMFHPNVDELSGSVCLDVINQTWSPMFDLVNIFKLFIPQLLSYPNPTDPLNGEAAALLMRDPDAYAKRIKECVRLHASDPVHL 885
            MS +KRR+ D+MKLMMS+++VH+ DES  +DF V F GP+DTPY+GG+WK+HV+LPKEYPFKSPSIGF NR++HPNVD++SGSVCLDVINQTWSPMFDL+NIF +FIPQLL YPNPTDPLNGEAA+LLM+D +AY  +++E VR +AS P+ +
Sbjct:    1 MSSNKRREKDVMKLMMSNYDVHLTDESRANDFHVKFHGPKDTPYEGGLWKIHVSLPKEYPFKSPSIGFVNRIYHPNVDDMSGSVCLDVINQTWSPMFDLLNIFDMFIPQLLRYPNPTDPLNGEAASLLMKDIEAYNAKVREYVRNYASQPIDM 153
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BLAST of mRNA_H-paniculata_contig3346.8963.1 vs. uniprot
Match: A0A8K1C4X5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C4X5_PYTOL)

HSP 1 Score: 236 bits (602), Expect = 4.830e-70
Identity = 106/152 (69.74%), Postives = 134/152 (88.16%), Query Frame = 1 
Query:  430 SPSKRRDTDMMKLMMSDFEVHIPDESSMHDFLVAFPGPEDTPYQGGIWKVHVTLPKEYPFKSPSIGFENRMFHPNVDELSGSVCLDVINQTWSPMFDLVNIFKLFIPQLLSYPNPTDPLNGEAAALLMRDPDAYAKRIKECVRLHASDPVHL 885
            S +KRR+TD+MKLMMSD+EV + DE+  +DF V F GP +TPY+GG+WK+HV+LPKEYPFKSPSIGF NR++HPNVD++SGSVCLDVINQTWSPMF+LVN+F++FIPQLL YPNP+DPLNGEAA+LLM+D DAY  ++KE VR +AS P+ +
Sbjct:    3 SMNKRRETDVMKLMMSDYEVQLTDETKTNDFHVKFHGPAETPYEGGVWKIHVSLPKEYPFKSPSIGFVNRIYHPNVDDMSGSVCLDVINQTWSPMFELVNVFEVFIPQLLRYPNPSDPLNGEAASLLMKDADAYNAKVKEYVRNYASQPIDM 154
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BLAST of mRNA_H-paniculata_contig3346.8963.1 vs. uniprot
Match: A0A7S3XS74_HETAK (Hypothetical protein n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XS74_HETAK)

HSP 1 Score: 239 bits (609), Expect = 2.620e-69
Identity = 108/154 (70.13%), Postives = 133/154 (86.36%), Query Frame = 1 
Query:  409 AAKMLSMSPSKRRDTDMMKLMMSDFEVHIPDESSMHDFLVAFPGPEDTPYQGGIWKVHVTLPKEYPFKSPSIGFENRMFHPNVDELSGSVCLDVINQTWSPMFDLVNIFKLFIPQLLSYPNPTDPLNGEAAALLMRDPDAYAKRIKECVRLHAS 870
            + + LS SPSKRRD D+++LMMSD+EV +PDE  ++DF VAF GPE TPY+GG+W VHVTLP EYP+KSPSIGF NR+FHPNVD++SGSVCLDVINQTWSPMFDL+NIF++F+PQLL  PNPTDPLNGEAAALL+RDP+AY  +++  V  +AS
Sbjct:   76 STRKLSSSPSKRRDNDLVRLMMSDYEVTLPDEDKIYDFHVAFHGPEKTPYEGGVWDVHVTLPPEYPYKSPSIGFSNRLFHPNVDDMSGSVCLDVINQTWSPMFDLINIFEVFLPQLLQDPNPTDPLNGEAAALLLRDPEAYRAKVQAYVHRYAS 229
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BLAST of mRNA_H-paniculata_contig3346.8963.1 vs. uniprot
Match: H3G861_PHYRM (UBC core domain-containing protein n=31 Tax=Peronosporaceae TaxID=4777 RepID=H3G861_PHYRM)

HSP 1 Score: 234 bits (596), Expect = 3.480e-69
Identity = 105/150 (70.00%), Postives = 131/150 (87.33%), Query Frame = 1 
Query:  436 SKRRDTDMMKLMMSDFEVHIPDESSMHDFLVAFPGPEDTPYQGGIWKVHVTLPKEYPFKSPSIGFENRMFHPNVDELSGSVCLDVINQTWSPMFDLVNIFKLFIPQLLSYPNPTDPLNGEAAALLMRDPDAYAKRIKECVRLHASDPVHL 885
            +KRR+TD+MKLMMSD+EVH+ DE+   D  + F GP+DTPY+GG WK+HVTLPK+YPFKSPSIGF NR++HPNVDE SGSVCLDVINQTWSPMF+LVNIF +FIPQLL YPNP+DPLNGEAA+LLM+D ++Y +++KE VR +AS P+ +
Sbjct:    5 NKRRETDVMKLMMSDYEVHLTDETKTSDLDIKFNGPKDTPYEGGSWKIHVTLPKDYPFKSPSIGFMNRIYHPNVDETSGSVCLDVINQTWSPMFELVNIFDVFIPQLLRYPNPSDPLNGEAASLLMKDAESYNRKVKEYVRNYASQPIEM 154
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BLAST of mRNA_H-paniculata_contig3346.8963.1 vs. uniprot
Match: A0A7S4D5W7_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D5W7_HETAK)

HSP 1 Score: 239 bits (609), Expect = 9.680e-68
Identity = 108/154 (70.13%), Postives = 133/154 (86.36%), Query Frame = 1 
Query:  409 AAKMLSMSPSKRRDTDMMKLMMSDFEVHIPDESSMHDFLVAFPGPEDTPYQGGIWKVHVTLPKEYPFKSPSIGFENRMFHPNVDELSGSVCLDVINQTWSPMFDLVNIFKLFIPQLLSYPNPTDPLNGEAAALLMRDPDAYAKRIKECVRLHAS 870
            + + LS SPSKRRD D+++LMMSD+EV +PDE  ++DF VAF GPE TPY+GG+W VHVTLP EYP+KSPSIGF NR+FHPNVD++SGSVCLDVINQTWSPMFDL+NIF++F+PQLL  PNPTDPLNGEAAALL+RDP+AY  +++  V  +AS
Sbjct:   76 STRKLSSSPSKRRDNDLVRLMMSDYEVTLPDEDKIYDFHVAFHGPEKTPYEGGVWDVHVTLPPEYPYKSPSIGFSNRLFHPNVDDMSGSVCLDVINQTWSPMFDLINIFEVFLPQLLQDPNPTDPLNGEAAALLLRDPEAYRAKVQAYVHRYAS 229
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3346.8963.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G096_ECTSI4.390e-10396.30Ubiquitin-conjugating enzyme type E2 n=1 Tax=Ectoc... [more]
A0A835Z4W6_9STRA2.950e-8078.43Ubiquitin-conjugating enzyme/RWD-like protein n=1 ... [more]
A0A7S2AI60_9STRA8.380e-7676.47Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2BA17_9STRA1.330e-7270.91Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2W0L0_9STRA1.540e-7273.68Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A2D4C6N9_PYTIN1.710e-7069.93Ubiquitin-conjugating enzyme E2, putative n=1 Tax=... [more]
A0A8K1C4X5_PYTOL4.830e-7069.74Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S3XS74_HETAK2.620e-6970.13Hypothetical protein n=4 Tax=Heterosigma akashiwo ... [more]
H3G861_PHYRM3.480e-6970.00UBC core domain-containing protein n=31 Tax=Perono... [more]
A0A7S4D5W7_HETAK9.680e-6870.13Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3346contigH-paniculata_contig3346:12785..18232 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score328.9
Seed ortholog evalue2.6e-87
Seed eggNOG ortholog2880.D7G096
Preferred nameUBC4
KEGG koko:K10576
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
GOsGO:0000209,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006109,GO:0006111,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010498,GO:0010675,GO:0010677,GO:0010906,GO:0016567,GO:0016740,GO:0019222,GO:0019538,GO:0019787,GO:0019899,GO:0019941,GO:0030163,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031625,GO:0032446,GO:0036211,GO:0043161,GO:0043170,GO:0043255,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044424,GO:0044444,GO:0044464,GO:0045721,GO:0045912,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051603,GO:0061630,GO:0061631,GO:0061650,GO:0061659,GO:0062012,GO:0062014,GO:0065007,GO:0070647,GO:0070936,GO:0070979,GO:0071704,GO:0080090,GO:0140096,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.ubiquitin protein ligase binding
EggNOG OGsKOG0416@1,KOG0416@2759
Ec32 ortholog descriptionubiquitin-conjugating enzyme type E2
Ec32 orthologEc-14_005020.1
EC2.3.2.23
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Exons6
Model size2264
Cds size975
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3346.8963.1prot_H-paniculata_contig3346.8963.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3346 13474..17360 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930033.6798427-UTR-H-paniculata_contig3346:12784..131001622930033.6798427-UTR-H-paniculata_contig3346:12784..13100Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3346 12785..13100 +
1691481119.0235672-UTR-H-paniculata_contig3346:12784..131001691481119.0235672-UTR-H-paniculata_contig3346:12784..13100Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3346 12785..13100 +
1622930033.6949322-UTR-H-paniculata_contig3346:13372..134731622930033.6949322-UTR-H-paniculata_contig3346:13372..13473Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3346 13373..13473 +
1691481119.034168-UTR-H-paniculata_contig3346:13372..134731691481119.034168-UTR-H-paniculata_contig3346:13372..13473Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3346 13373..13473 +
1622930033.7865062-UTR-H-paniculata_contig3346:17360..182321622930033.7865062-UTR-H-paniculata_contig3346:17360..18232Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3346 17361..18232 +
1691481119.086709-UTR-H-paniculata_contig3346:17360..182321691481119.086709-UTR-H-paniculata_contig3346:17360..18232Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3346 17361..18232 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930033.7133536-CDS-H-paniculata_contig3346:13473..135231622930033.7133536-CDS-H-paniculata_contig3346:13473..13523Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3346 13474..13523 +
1691481119.0422282-CDS-H-paniculata_contig3346:13473..135231691481119.0422282-CDS-H-paniculata_contig3346:13473..13523Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3346 13474..13523 +
1622930033.7265174-CDS-H-paniculata_contig3346:13941..140241622930033.7265174-CDS-H-paniculata_contig3346:13941..14024Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3346 13942..14024 +
1691481119.0499039-CDS-H-paniculata_contig3346:13941..140241691481119.0499039-CDS-H-paniculata_contig3346:13941..14024Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3346 13942..14024 +
1622930033.7387493-CDS-H-paniculata_contig3346:14592..147601622930033.7387493-CDS-H-paniculata_contig3346:14592..14760Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3346 14593..14760 +
1691481119.0599077-CDS-H-paniculata_contig3346:14592..147601691481119.0599077-CDS-H-paniculata_contig3346:14592..14760Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3346 14593..14760 +
1622930033.752587-CDS-H-paniculata_contig3346:16159..167761622930033.752587-CDS-H-paniculata_contig3346:16159..16776Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3346 16160..16776 +
1691481119.0692756-CDS-H-paniculata_contig3346:16159..167761691481119.0692756-CDS-H-paniculata_contig3346:16159..16776Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3346 16160..16776 +
1622930033.7734554-CDS-H-paniculata_contig3346:17303..173601622930033.7734554-CDS-H-paniculata_contig3346:17303..17360Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3346 17304..17360 +
1691481119.0769603-CDS-H-paniculata_contig3346:17303..173601691481119.0769603-CDS-H-paniculata_contig3346:17303..17360Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3346 17304..17360 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3346.8963.1

>prot_H-paniculata_contig3346.8963.1 ID=prot_H-paniculata_contig3346.8963.1|Name=mRNA_H-paniculata_contig3346.8963.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=325bp
MLSMSPSKRRDTDMMKLMMSDFEVHIPDESSMHDFLVAFPGPEDTPYQGG
IWKVHVTLPKEYPFKSPSIGFENRMFHPNVDELSGSVCLDVINQTWSPMF
DLVNIFKLFIPQLLSYPNPTDPLNGEAAALLMRDPDAYAKRIKECVRLHA
SDPVHLDGTPVVPPPPPATGTPMTPTVSRISSATGLGSGGGTPIARVRID
GAASAVPAAGREAEDDSDKPAESSVEANCSGSGSSPASARSSGARDASGG
VDDMVIAGEEHDSGVGVGVSGNKVGGHEEHMKRRKLSSADTNDGAGSSSA
SEYMMEMEMDETASDVSALSDVEA*
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mRNA from alignment at H-paniculata_contig3346:12785..18232+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3346.8963.1 ID=mRNA_H-paniculata_contig3346.8963.1|Name=mRNA_H-paniculata_contig3346.8963.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5448bp|location=Sequence derived from alignment at H-paniculata_contig3346:12785..18232+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGTTGAAACAGCAGAGCGGTAAAAAAAAAAATTGCAGCTGTGTAGTAGGA
CCCATACACAACACGAAAAATGACTGATCAGAAAAACACAAATACCTTCT
GCTTGTAAACATCCCTTCTCACTCACATAGACCCGCTGAAGTTTCCGCCA
CGTCTGTCAGCTTTTGCTCTTCTCGGTCATCATTCGTCGCTGGTCAACTC
TCCAACGATCCCCAGTTGTATGTTCGTTCCTCTGCGCCGGTGCTCTTCTC
CAGTGTCTCCATCTCATCGTATCGTCTGACTCGAAACAAGAGCTAGTTGA
ACCTCCGCATTTTTCGGTGAGAGTTGCCAAGTTACCCCCTCCTTATGCTA
GCTGTGCTTTCAGCCGAGGCGCACTGCACAACCCGCTGGCACTTCATCAC
CTTGAGAGCCTTGTGTAATGATATCTGTGGCTTCCTCGGGCGTACTCCGC
GCTCTTCGAGAGGCGCGTATCGCCGTGAATACAGTAAGGAGCATTTTCGT
CAGGTGAGAGATGGATAGATGAGATAGCTGTGATTGCATCGCTTGACGTT
TTGTTTCGCAACCACGTGCCTTCTTGAATATGCCTCAGGTCCAACACGAC
GGCCGAAGAGCGGAAATACAGCACTCAAGACTCGCTCTGGACTTTGGACA
TACAATCTTGTTCAACCAGGGAGGTGCGCGGCAGCCAAAATGTTGAGCAT
GTCTCCCTCCAAGCGGCGGGACACGGATATGATGAAGCTGTGAGTTATGT
TGGTTTGCCGAGTTGCTATTGCAAGTACGGAAAGAGAGCACAAATTGAAG
TGGCAATGATCTTGAGTGCACACCACATCCCGAAGGCACACAGATGCACA
GATGAAAGACGGATAGCGCCGCTCTCGCAATAGTATGTCCGCCCTGGTTC
CCACCGAAGCCTTCTCAAACAGCACGTACGCATCAATCAGTGGGTGGCAG
CTTTGTAGTGTCTCTAATTATAAGTTCCTGGACTTTTCCCCATCGTTTGT
CTTCCAATAAAATACAGCAGGCGCTAACGTATGCATACGTCTGTGTTGTT
TCTGCTCTACATTTTTGCTCTTGGGCCTGAGTTCCCTGTCTCTTGTCGCC
CCTTCCTCGCATGAATCGCTGTTTTTCCACTGCCGAAAAAACACTCCCAA
AATGAAGAATGATGAGCGACTTTGAAGTGCACATCCCCGACGAATCGAGT
ATGCACGACTTCCTGGTGGCTTTCCCGGGACCGGAAGACAGTGAGTCCTT
TGCTTCTAGTGATGTGATTGGTTTTTATGTCACCACAAAAAAAATCTGAA
AGTGTTTGTACTGTTTTGACTATACTTGAGCAAAGGTGCAGGCTCTGGGC
ACTGCCGCTACTACTTTATTACGGCGGTCATTCCAGAGAAAAGGCGAGGC
CGAATCAAGGGAGGGTTGGCCGCTTGATTTTATCTCGCCCTTTCTTGGAC
GGCCAGTTGGTCCGCCGTCGGATATACACACTCCATATTTCCGCTTTTTT
CGCCAAGGCGTCCTGGCCCGGGACGCCGTGGTTCGTTTTCAGTTCTCGCA
TTCTCCCTCAATCACGTTCGTCCTAAAGCGCTGCATTTCGGGCAGCACGA
ACTTTGCTGTGTTACTGTACTGCGTGACCGATGAGTGTTTTACAGTGATG
AAATTTACTCGAGTGCACAGTTCTGAACTCTTGCCGCATGCCACGTGCTC
ATTTTGTGTTTCCTGGCCAGCAAGTTATCTATCTCTCTGGTGCGCATATG
TCAAGTGAAGGTATGACTTCACTCATCCGTACCCCTGGCTACCCGTGTGA
ACACGCAGCACCGTATCAGGGAGGGATCTGGAAAGTTCATGTGACTTTGC
CCAAGGAGTATCCCTTCAAGTCTCCCTCGATTGGCTTTGAAAATCGCATG
TTCCACCCTAACGTGGACGAGCTGTCCGGGTCAGTTTGCCTGGACGTCAT
CAACCAGACGTGGAGCCCGATGTTTGGTGAGAGTGCCTGCTCGGCTTCCG
TTTCTAGATGTCGATGGATGTTGATTTGTGTCCTGCAGTCACTGTTGTGA
AGGGTGTCTTCATGCCTTGGGTTTCATGTGTTCCCGTGGTCAAATGTACT
GGGAAAATATACAGTGTTTCTTGAAAAGCAATGCACTCTGACAGTTGAAA
ACGTATGATCGTTGAATGAACGCACACGGACTCATTTTACATCAGGGTTC
CTTCATAGTATTGAAGTACGTGCCCGGTGAACTTTGTATTGAAGCAACGG
GTAGTAGACGGGGGGGCGGGTGGGGTCAGCATATGTAATATTTTTTCAAA
ATATAGTGAGTTTGACACGTGCGGCTGCCTCAAGCGTTGATAAATTTCAA
CATTCAACATGCCACTATTATCGTCGAGTTTCGACGGTCCGAACAGTGTG
TACACAATGTTCTGACATTGTTATTCTGTGTGTGTACAGTGCAACCGTGT
ATGTGTCCTCGGTGTTTTCGCTTCATGTTTCGGTGAGCACAAGTACGAGT
AGGGCGTTCGGTGCCAGGCACAACGTCATTATGTCACATGAGTGAATGTC
GAGGCTAATTGCACAGGTTCTTTAGCATGATTCCTGATACTTCCTGATAT
GCGTTCGCTCGTCTTCGATTTATCTGTCCTGTCCGCTGTACTACTTTCCT
GGTCTTGTGTCGGTTCAGTCACATAAGGCCAGCTTCTGCTTCCCTACATA
ACACTAATGATACATTCATATGTACGTTGCCACTGCCATGCGCGTGCTTG
TTCTTGGAAGTTGATACTAAAGTGGAAAAGCCCTCACCGTCTGCGTGATT
TTGACAAGCCTAGCCACGTTCAAATCCCATGTCCTGCTACTGGCACACGA
AGCCTGGAGACATGATGCTATACGTAGCGTTCTCTTGCCGTATAGAAAAT
AACACGTTTCGTCCCTGCCACCGCCGATGTGCTGCACCAACTACAGCTTG
TTGATGGTTCCATTATCTCGACATGTGTGATGACTCAACTACCGTTGTTC
CTGGACCCCCAAGCGCCAGACCAACGTCTCACCGTCATCTCGAAGAAGGG
TGACCATCCTACCCTCACGGAGAGGGCCCCTCCTTCGAGATGATGGCCTA
CGTGCTTATGCCTTTCAAAGCTCATCCTGGATCAACAGTAGGGTTAGGGT
GTAGGGTCAAGGTCTAGAACGAAAATAATTGCTGGGAGCGTCGTGATTTC
TTTCAGCCTCACGCGAGAGGTGAACTCTACTCGGTATTGTTGATTGGACG
TACATATTTGGGCATTGCTGGTCGAAATTGATCTGGTCACGATGTTCAAT
TCCCAAGATATGGGTGCAAGCGGCCTCACTTGGGTATGCGAAACACAACC
CTTTCTTCCCATGTGACCTCCGCAGATCTGGTAAACATCTTCAAGCTTTT
TATTCCCCAGCTTCTGTCCTACCCGAACCCAACTGATCCCTTGAACGGCG
AGGCCGCAGCGCTTTTGATGCGCGACCCGGATGCTTACGCTAAGCGCATC
AAAGAGTGTGTGCGCCTTCACGCATCAGACCCGGTACACCTCGATGGTAC
GCCTGTTGTTCCGCCTCCGCCTCCTGCCACGGGTACCCCAATGACGCCAA
CGGTGTCACGGATTAGCTCCGCGACAGGCCTGGGCTCTGGGGGAGGAACG
CCCATAGCTCGTGTCCGCATTGATGGCGCAGCTTCTGCCGTCCCGGCGGC
GGGAAGAGAAGCGGAGGACGACAGTGACAAACCGGCCGAGTCATCAGTTG
AAGCGAACTGTAGTGGCTCCGGTTCCAGTCCGGCTTCGGCAAGGAGTAGT
GGTGCACGAGACGCGTCAGGGGGTGTGGATGATATGGTGATTGCTGGCGA
AGAACACGACAGCGGTGTTGGGGTTGGTGTTTCGGGTAACAAGGTAGGCG
GACACGAAGAGCACATGAAGCGAAGAAAGTTATCCTCGGCGGACACGAAC
GATGGCGCCGGAAGCAGCAGTGCGAGCGAGTACATGATGGAGGTGTGACC
CCACCGGATATCTTGATAATCGCGGTACCCTTGTTGGCTCGTTCCGTCGT
GGTTTGTCGTTTGAAAGTGAACCATATATTGGCGAACGAATATGTTCCTT
GCGATACCCTGAAGAGGAAATCACGACCACACCTTTGACTCTGCATGCGA
CACGGCGTTCGACTTCACTTCGAGAGATTTGTTCCCCAGGTCGTCTGCAG
ACCAGGTTTCAGTCCTGCACAGAATGTCCCGTTGGGAATATCCCACTGGT
TTATCGTTCGTTGCTTACGTCGCGATGCTTGAGACGTGAACATCAATCGT
CGTCAGCCCCAGTGCGTCGCCAGTACACTGCTTTTTGTTTGCGACCGCAA
ACGTTTGTAGTGAGCGATTTTGTCAATACGTGCTGTTGTCAACAAACGCG
GAGTGAACCGTTGAAATGTTGCAAAAGCTTCCCTCTCTTAATCCAAATCT
CCGAAACTGTTTTCATTTCGTGTCTGCGCGGCGGCGTCGGTTGTCAACTG
TTTGTGTTGATCATTGCAGATGGAGATGGACGAAACCGCCAGTGACGTGA
GCGCGCTGAGCGACGTGGAGGCGTGATGGCATGATGGCCGCTGGAAACGG
GACGGCTTTTCCAACATAACGGTACATAACCTCTTTAAAAACAGGACTGG
GAGACTTGAAACGTTTCGTGTCTATAATACCGAGATTATGCAGCTCCGCT
GCTGCGCCCCTCCACGTGTACAAGCTGCTGTGGTCCTGGCGCATTCTGTA
CATAAAAATATGGTGTATGTTGTGTTTGTTTCCCCTCTTCGCCCCCCCCC
CCTCCCCGTCGTTTGTTTTCAAGCCCTGGAGCGCTTGGTGTGTTTTTGTA
TCCGCATTAGTAGGCGGTGGTGAAGTTTCATAAATATCGATGAGTGGGAG
GGGCAGCTAGTTTGGTTTTGTAAGAACCCCCTGTCCATTCTTGCCGCACC
CGCGTGGCCAATGTAATGCGTAGGGTACTACACCTATCCGCCCCGGGCAG
TCTTGGTTTTGAAAACGCGTCTGCTTTTTTTTTCTTGTATTTGTAGTTGC
GCATGGTGCTTTTTGTGTCAGTTGCCTTGGAACAGGGCTTTCAGGGGGTG
CCTGCATTCGTTTGTTTTGTCATTTTGTTGATCTTTTGTACTTTCTGCGT
CAGAAAGTGTTTACAAGATTTGACGAAAGGGGGTTCACAATCCGTTTTGA
GTGATGTCGGATCTAGAGATGGGTTTTCGTCGACCTTGTCCTGTTGGGCA
ATGTGCCTCTTGTTTTTCAACCCCCGGAAGGCTGAGGCAGAAACCTTCAC
CTCTTCTTCCATACTCGGGTATTTACCCAAGCATGTCTACATTTCCTTTA
ACAGAAAGTTATTTATTCCTCTGCGGGATAGGCGCCACCCCGGTTCGGCT
GAATCAAGTAGGCCTTGACAGAAGCTGCGGCCCTCTTTTGCCCTAGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig3346:12785..18232+

>mRNA_H-paniculata_contig3346.8963.1 ID=mRNA_H-paniculata_contig3346.8963.1|Name=mRNA_H-paniculata_contig3346.8963.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1950bp|location=Sequence derived from alignment at H-paniculata_contig3346:12785..18232+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTGAGCATGTCTCCCTCCAAGCGGCGGGACACGGATATGATGAAGCT
ATGTTGAGCATGTCTCCCTCCAAGCGGCGGGACACGGATATGATGAAGCT
AATGATGAGCGACTTTGAAGTGCACATCCCCGACGAATCGAGTATGCACG
ACTTCCTGGTGGCTTTCCCGGGACCGGAAGACAAATGATGAGCGACTTTG
AAGTGCACATCCCCGACGAATCGAGTATGCACGACTTCCTGGTGGCTTTC
CCGGGACCGGAAGACACACCGTATCAGGGAGGGATCTGGAAAGTTCATGT
GACTTTGCCCAAGGAGTATCCCTTCAAGTCTCCCTCGATTGGCTTTGAAA
ATCGCATGTTCCACCCTAACGTGGACGAGCTGTCCGGGTCAGTTTGCCTG
GACGTCATCAACCAGACGTGGAGCCCGATGTTTGCACCGTATCAGGGAGG
GATCTGGAAAGTTCATGTGACTTTGCCCAAGGAGTATCCCTTCAAGTCTC
CCTCGATTGGCTTTGAAAATCGCATGTTCCACCCTAACGTGGACGAGCTG
TCCGGGTCAGTTTGCCTGGACGTCATCAACCAGACGTGGAGCCCGATGTT
TGATCTGGTAAACATCTTCAAGCTTTTTATTCCCCAGCTTCTGTCCTACC
CGAACCCAACTGATCCCTTGAACGGCGAGGCCGCAGCGCTTTTGATGCGC
GACCCGGATGCTTACGCTAAGCGCATCAAAGAGTGTGTGCGCCTTCACGC
ATCAGACCCGGTACACCTCGATGGTACGCCTGTTGTTCCGCCTCCGCCTC
CTGCCACGGGTACCCCAATGACGCCAACGGTGTCACGGATTAGCTCCGCG
ACAGGCCTGGGCTCTGGGGGAGGAACGCCCATAGCTCGTGTCCGCATTGA
TGGCGCAGCTTCTGCCGTCCCGGCGGCGGGAAGAGAAGCGGAGGACGACA
GTGACAAACCGGCCGAGTCATCAGTTGAAGCGAACTGTAGTGGCTCCGGT
TCCAGTCCGGCTTCGGCAAGGAGTAGTGGTGCACGAGACGCGTCAGGGGG
TGTGGATGATATGGTGATTGCTGGCGAAGAACACGACAGCGGTGTTGGGG
TTGGTGTTTCGGGTAACAAGGTAGGCGGACACGAAGAGCACATGAAGCGA
AGAAAGTTATCCTCGGCGGACACGAACGATGGCGCCGGAAGCAGCAGTGC
GAGCGAGTACATGATGGAGATCTGGTAAACATCTTCAAGCTTTTTATTCC
CCAGCTTCTGTCCTACCCGAACCCAACTGATCCCTTGAACGGCGAGGCCG
CAGCGCTTTTGATGCGCGACCCGGATGCTTACGCTAAGCGCATCAAAGAG
TGTGTGCGCCTTCACGCATCAGACCCGGTACACCTCGATGGTACGCCTGT
TGTTCCGCCTCCGCCTCCTGCCACGGGTACCCCAATGACGCCAACGGTGT
CACGGATTAGCTCCGCGACAGGCCTGGGCTCTGGGGGAGGAACGCCCATA
GCTCGTGTCCGCATTGATGGCGCAGCTTCTGCCGTCCCGGCGGCGGGAAG
AGAAGCGGAGGACGACAGTGACAAACCGGCCGAGTCATCAGTTGAAGCGA
ACTGTAGTGGCTCCGGTTCCAGTCCGGCTTCGGCAAGGAGTAGTGGTGCA
CGAGACGCGTCAGGGGGTGTGGATGATATGGTGATTGCTGGCGAAGAACA
CGACAGCGGTGTTGGGGTTGGTGTTTCGGGTAACAAGGTAGGCGGACACG
AAGAGCACATGAAGCGAAGAAAGTTATCCTCGGCGGACACGAACGATGGC
GCCGGAAGCAGCAGTGCGAGCGAGTACATGATGGAGATGGAGATGGACGA
AACCGCCAGTGACGTGAGCGCGCTGAGCGACGTGGAGGCGTGAATGGAGA
TGGACGAAACCGCCAGTGACGTGAGCGCGCTGAGCGACGTGGAGGCGTGA
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