mRNA_H-paniculata_contig33449.8959.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig33449.8959.1 vs. uniprot
Match: A0A6D2JBX5_9BRAS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JBX5_9BRAS) HSP 1 Score: 150 bits (379), Expect = 1.300e-40 Identity = 79/184 (42.93%), Postives = 111/184 (60.33%), Query Frame = 1
Query: 13 TGTRPDIAYTVHQTTRRMEDPCREVFSTCKRILRYVSTVPDLDITFGGKSNGHGLEGFVDADWVEDVEDPKSTKGYIFKLNGCAISWCSREQQLVTWSSTEAEYLAAEEAVKETVYLRELLGSTGFGCRESTMLFEDNKSAINLSKEFSAHGRIKHIGVHWHGIREWIREGILALNTCRSATNL 564
T TRPD+ Y+V+ +R ME+P + KRILRYV I + + G L GFVD+D+ DV+D KST GY+F L G A+SW S++Q +VT S+TEAE++AA + ++LR +LG G+ E T LF DN S I LSK HGR KHI V ++ +R+ + E ++ L C + L
Sbjct: 167 TATRPDLIYSVNLVSRYMENPNEQHLLAAKRILRYVQGTCGFGIRYK-QGEGEKLVGFVDSDYAGDVDDRKSTSGYVFMLGGGAVSWASKKQPIVTLSTTEAEFVAAAYGACQAMWLRNILGEIGWAQEEGTTLFCDNSSTIKLSKNPVLHGRSKHIHVRYYFLRDLVNEEVILLKFCGTEDQL 349
BLAST of mRNA_H-paniculata_contig33449.8959.1 vs. uniprot
Match: H3G557_PHYRM (Uncharacterized protein n=3 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G557_PHYRM) HSP 1 Score: 144 bits (364), Expect = 5.790e-40 Identity = 76/179 (42.46%), Postives = 109/179 (60.89%), Query Frame = 1
Query: 1 MYVSTGTRPDIAYTVHQTTRRMEDPCREVFSTCKRILRYVSTVPDLDITFGGKSNGHGLEGFVDADWVEDVEDPKSTKGYIFKLNGCAISWCSREQQLVTWSSTEAEYLAAEEAVKETVYLRELLGSTGFGCRESTMLFEDNKSAINLSKEFSAHGRIKHIGVHWHGIREWIREGILAL 537
MY++T TRPDIA V + + E + KRIL+Y+ T DL + F G + G L G+ DA+W D++ +ST GY+F LNG AISW S+ Q V SSTEAEY+A A +E V+LR+LL G C +T +F+DN+ I L+K + H R KHI + +H +RE + + ++ L
Sbjct: 43 MYLATCTRPDIAQAVGEVAKFCEWYNKSHRVAAKRILKYLKTTQDLGLVFNGGTKGE-LIGYADANWAGDLDSRRSTTGYVFFLNGSAISWKSKRQPTVATSSTEAEYMALYNATQEAVWLRQLLLDVGCECVGATTIFQDNQGCIALAKNPAYHSRTKHIDLKYHFLREKVEDKVIVL 220
BLAST of mRNA_H-paniculata_contig33449.8959.1 vs. uniprot
Match: H3GB69_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GB69_PHYRM) HSP 1 Score: 145 bits (367), Expect = 1.880e-39 Identity = 76/179 (42.46%), Postives = 109/179 (60.89%), Query Frame = 1
Query: 1 MYVSTGTRPDIAYTVHQTTRRMEDPCREVFSTCKRILRYVSTVPDLDITFGGKSNGHGLEGFVDADWVEDVEDPKSTKGYIFKLNGCAISWCSREQQLVTWSSTEAEYLAAEEAVKETVYLRELLGSTGFGCRESTMLFEDNKSAINLSKEFSAHGRIKHIGVHWHGIREWIREGILAL 537
MY++T TRPDIA V + + E + + KRIL+Y+ T DL + F G + G L G+ DA+W D++ +ST GY+F LNG AISW S+ Q V SSTEAEY+A A +E V+LR+LL G C +T F+DN+ I L+K + H R KHI + +H +RE + + ++ L
Sbjct: 102 MYLATCTRPDIAQAVGEVAKFCERYNKSHWVAAKRILKYLKTTQDLGLVFNGGTKGE-LIGYADANWAGDLDTRRSTTGYVFFLNGSAISWKSKRQPTVATSSTEAEYMALYNATQEAVWLRQLLLDVGCECVGATTFFQDNQGCIALAKNPAYHSRTKHIDLKYHFLREKVEDKVIVL 279
BLAST of mRNA_H-paniculata_contig33449.8959.1 vs. uniprot
Match: UPI0018F839FC (secreted RxLR effector protein 161-like n=1 Tax=Tripterygium wilfordii TaxID=458696 RepID=UPI0018F839FC) HSP 1 Score: 142 bits (359), Expect = 2.410e-39 Identity = 75/182 (41.21%), Postives = 109/182 (59.89%), Query Frame = 1
Query: 1 MYVSTGTRPDIAYTVHQTTRRMEDPCREVFSTCKRILRYVSTVPDLDITFGGKSNGHGLEGFVDADWVEDVEDPKSTKGYIFKLNGCAISWCSREQQLVTWSSTEAEYLAAEEAVKETVYLRELLGSTGFGCRESTMLFEDNKSAINLSKEFSAHGRIKHIGVHWHGIREWIREGILALNTC 546
MY+ TRPDIA++V +R ME+P + KRILRY+ D + + K G L + D+D+ D+ED KST GY+F L A+SW S++Q +VT S+TEAE++AA + V++R +LG E+T++F DN S I LSK HGR KHI V +H +RE +G++ + C
Sbjct: 1 MYLK-ATRPDIAFSVSLISRYMENPTQLHLQAAKRILRYLKGTIDFGVLYS-KGGGSNLIAYADSDYAGDLEDMKSTSGYVFMLGSGAVSWSSKKQPIVTLSTTEAEFIAAASCSCQAVWMRRILGEVDHEQSEATVVFCDNSSTIKLSKNPVLHGRSKHIDVRFHFLRELTNDGVVEMVHC 180
BLAST of mRNA_H-paniculata_contig33449.8959.1 vs. uniprot
Match: A0A034V8I0_BACDO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Bactrocera dorsalis TaxID=27457 RepID=A0A034V8I0_BACDO) HSP 1 Score: 150 bits (379), Expect = 3.310e-39 Identity = 81/175 (46.29%), Postives = 112/175 (64.00%), Query Frame = 1
Query: 1 MYVSTGTRPDIAYTVHQTTRRMEDPCREVFSTCKRILRYVSTVPDLDITFGGKSNGHGLEGFVDADWVEDVEDPKSTKGYIFKLNGCAISWCSREQQLVTWSSTEAEYLAAEEAVKETVYLRELLGSTGFGCRESTMLFEDNKSAINLSKEFSAHGRIKHIGVHWHGIREWIREG 525
MY+S TRPDI ++V + +R DP E + K ILRY+++ DL + + + G ++GFVDADW D+ D KS GY F L+G AI+W S++QQ V SSTEAEY+A E VKE ++LR LL G +E T+++ DN SA +LSK HGR KHI + H IR+ I++G
Sbjct: 404 MYLSVCTRPDIMHSVSKLAQRNADPHTEHVAGVKHILRYLASTADLKLRYS--ACGKPVQGFVDADWGNDMMDRKSFSGYAFVLSGSAITWQSKKQQTVALSSTEAEYVALAEGVKEALFLRNLLNEIGCEQQEPTIIYGDNLSAQHLSKNQMFHGRSKHIDIKHHFIRDVIKDG 576
BLAST of mRNA_H-paniculata_contig33449.8959.1 vs. uniprot
Match: A0A2P4XPH2_9STRA (RxLR effector candidate protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XPH2_9STRA) HSP 1 Score: 143 bits (360), Expect = 3.390e-39 Identity = 73/179 (40.78%), Postives = 110/179 (61.45%), Query Frame = 1
Query: 1 MYVSTGTRPDIAYTVHQTTRRMEDPCREVFSTCKRILRYVSTVPDLDITFGGKSNGHGLEGFVDADWVEDVEDPKSTKGYIFKLNGCAISWCSREQQLVTWSSTEAEYLAAEEAVKETVYLRELLGSTGFGCRESTMLFEDNKSAINLSKEFSAHGRIKHIGVHWHGIREWIREGILAL 537
MY++T TRP+IAY V + + E + + KRIL+Y+ T D+ + F G G L G+ DA+W D++ +ST GY+F LNG AISW S+ Q V SSTEAEY+A A++E V+LR+LL G+ + +T +++DN+ I L+K + H R KHI + +H +RE + + L
Sbjct: 30 MYLATSTRPNIAYAVGEVAKFCERYNKSHWVAAKRILKYLKTTQDVGLVFNGGIKGE-LVGYADANWAGDLDTRRSTTGYVFFLNGSAISWKSKRQPTVATSSTEAEYMALYNAIQEAVWLRQLLKDLGYENKGATTIYQDNQGCIALAKNPAYHTRTKHIDIKFHFLREKVESKTVEL 207
BLAST of mRNA_H-paniculata_contig33449.8959.1 vs. uniprot
Match: UPI001C093D0F (LOW QUALITY PROTEIN: secreted RxLR effector protein 161-like n=1 Tax=Alosa sapidissima TaxID=34773 RepID=UPI001C093D0F) HSP 1 Score: 142 bits (359), Expect = 5.770e-39 Identity = 71/184 (38.59%), Postives = 112/184 (60.87%), Query Frame = 1
Query: 1 MYVSTGTRPDIAYTVHQTTRRMEDPCREVFSTCKRILRYVSTVPDLDITFGGKSNGHGLEGFVDADWVEDVEDPKSTKGYIFKLNGCAISWCSREQQLVTWSSTEAEYLAAEEAVKETVYLRELLGSTGFGCRESTMLFEDNKSAINLSKEFSAHGRIKHIGVHWHGIREWIREGILALNTCRS 552
+Y+ST TRPDIA+ V DP ++ ++ KRILRY++ L + + K+ G+ DADW D++D KS GY+FK++G A+SW S++Q V S+ EAEY+A A +E V++R+LL +T+++EDN+SAI +++ HGR KHI + H IR+ + G + L C++
Sbjct: 35 LYLSTRTRPDIAFAVSNVASFCSDPTKQHWTAVKRILRYLNGTQPLGLLYS-KNTEKECIGYSDADWAGDLDDRKSVSGYMFKMSGAAVSWKSKKQSXVLLSTAEAEYMALASAAQEAVWMRQLLSDLKNCPAGATVIYEDNQSAICMARNPQFHGRAKHIDIKHHFIRDQVASGAVDLKDCKT 217
BLAST of mRNA_H-paniculata_contig33449.8959.1 vs. uniprot
Match: H3GB17_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GB17_PHYRM) HSP 1 Score: 146 bits (369), Expect = 7.240e-39 Identity = 76/179 (42.46%), Postives = 109/179 (60.89%), Query Frame = 1
Query: 1 MYVSTGTRPDIAYTVHQTTRRMEDPCREVFSTCKRILRYVSTVPDLDITFGGKSNGHGLEGFVDADWVEDVEDPKSTKGYIFKLNGCAISWCSREQQLVTWSSTEAEYLAAEEAVKETVYLRELLGSTGFGCRESTMLFEDNKSAINLSKEFSAHGRIKHIGVHWHGIREWIREGILAL 537
MY++T TRPDIA V + + E + + KRIL+Y+ T DL + F G + G L G+ DA W D++ +ST GY+F LNG AISW S+ Q V SSTEAEY+A A +E V+LR+LL G C +T +F+DN+ I L+K + H R KHI + +H +RE + + ++ L
Sbjct: 198 MYLATCTRPDIAQAVGEVAKFCERYNKSHWVAAKRILKYLKTTQDLGLVFNGGTKGE-LIGYADASWAGDLDTRRSTTGYVFFLNGSAISWKSKRQPTVATSSTEAEYMALYNATQEAVWLRQLLLDVGCECVAATTIFQDNQGCIALAKNPAYHSRTKHIDLKYHFLREKVEDKVIVL 375
BLAST of mRNA_H-paniculata_contig33449.8959.1 vs. uniprot
Match: A0A1X7STY0_AMPQE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7STY0_AMPQE) HSP 1 Score: 145 bits (365), Expect = 1.510e-38 Identity = 73/182 (40.11%), Postives = 109/182 (59.89%), Query Frame = 1
Query: 1 MYVSTGTRPDIAYTVHQTTRRMEDPCREVFSTCKRILRYVSTVPDLDITFGGKSNGHGLEGFVDADWVEDVEDPKSTKGYIFKLNGCAISWCSREQQLVTWSSTEAEYLAAEEAVKETVYLRELLGSTGFGCRESTMLFEDNKSAINLSKEFSAHGRIKHIGVHWHGIREWIREGILALNTC 546
+Y+ST TRPDIA+ V + DP + + K I+RY++ + F K +EG+ DADW D++D KS GY+FKL+G +ISW SR+Q V S+ EAEY++ A +E ++L +L+ G + L+EDN++AI LSK HGR KHI + +H IR+ I++G L + C
Sbjct: 187 LYLSTTTRPDIAFAVSSVAKYTSDPTVQHWKAVKHIIRYLTGTVGYGLMFRKKKTAE-VEGYSDADWAGDIDDRKSILGYLFKLSGASISWRSRKQSCVALSTAEAEYISLATAGQEAIWLSQLINELKRGTEKPVTLYEDNQAAICLSKNPQFHGRSKHIAIKYHFIRDEIQKGTLTVQYC 367
BLAST of mRNA_H-paniculata_contig33449.8959.1 vs. uniprot
Match: A0A5S6QJX2_TRIMR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6QJX2_TRIMR) HSP 1 Score: 146 bits (369), Expect = 2.700e-38 Identity = 76/185 (41.08%), Postives = 112/185 (60.54%), Query Frame = 1
Query: 1 MYVSTGTRPDIAYTVHQTTRRMEDPCREVFSTCKRILRYVSTVPDLDITFGGKSNGH-GLEGFVDADWVEDVEDPKSTKGYIFKLNGCAISWCSREQQLVTWSSTEAEYLAAEEAVKETVYLRELLGSTGFGCRESTMLFEDNKSAINLSKEFSAHGRIKHIGVHWHGIREWIREGILALNTCRS 552
+Y++T TRPDI++ V Q R ME P + + KR++RY++ P + F +NG L GFVDADW D D KST GY FK+ ++W SR+Q V SSTEAEY+AA EA ++ +++R++L G E T+++EDN+ I +++ R KHI + +H +RE GI+AL C S
Sbjct: 279 LYLATATRPDISFAVGQLCRCMEHPTQRDWKAVKRVMRYLAGSPYRKLRFS--ANGSIKLSGFVDADWAGDQADRKSTSGYAFKVGTSTVAWSSRKQSFVALSSTEAEYIAASEACRDLLWIRQVLEDIGIEQVEPTIVYEDNQGCIKMAQSERHTRRTKHIDIRYHQLRELQESGIIALTYCPS 461 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig33449.8959.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig33449.8959.1 >prot_H-paniculata_contig33449.8959.1 ID=prot_H-paniculata_contig33449.8959.1|Name=mRNA_H-paniculata_contig33449.8959.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=192bp MYVSTGTRPDIAYTVHQTTRRMEDPCREVFSTCKRILRYVSTVPDLDITFback to top mRNA from alignment at H-paniculata_contig33449:346..921+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig33449.8959.1 ID=mRNA_H-paniculata_contig33449.8959.1|Name=mRNA_H-paniculata_contig33449.8959.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=576bp|location=Sequence derived from alignment at H-paniculata_contig33449:346..921+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig33449:346..921+ >mRNA_H-paniculata_contig33449.8959.1 ID=mRNA_H-paniculata_contig33449.8959.1|Name=mRNA_H-paniculata_contig33449.8959.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1152bp|location=Sequence derived from alignment at H-paniculata_contig33449:346..921+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |