mRNA_H-paniculata_contig33411.8954.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig33411.8954.1
Unique NamemRNA_H-paniculata_contig33411.8954.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig33411.8954.1 vs. uniprot
Match: D7G554_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G554_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 3.650e-11
Identity = 33/48 (68.75%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:   31 PLVPPF--SLCSWDGQGAAWAIRSLRLAIEEQGDERPGPVFTALLRYS 168
            PL+ P+   LCSWDGQG+A A+RSLRLAIEEQG ERPG  FT LL  S
Sbjct:   11 PLLAPYWPGLCSWDGQGSARAVRSLRLAIEEQGGERPGSAFTMLLSES 58
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig33411.8954.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G554_ECTSI3.650e-1168.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig33411contigH-paniculata_contig33411:83..274 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.1
Seed ortholog evalue1.4e-08
Seed eggNOG ortholog2880.D7G554
KEGG koko:K06642,ko:K07203,ko:K08873
KEGG Pathwayko01521,ko01522,ko03015,ko03450,ko04012,ko04066,ko04072,ko04110,ko04136,ko04138,ko04139,ko04140,ko04150,ko04151,ko04152,ko04211,ko04212,ko04213,ko04218,ko04371,ko04630,ko04659,ko04714,ko04910,ko04919,ko04920,ko04930,ko04931,ko05165,ko05167,ko05200,ko05205,ko05206,ko05210,ko05212,ko05214,ko05215,ko05221,ko05224,ko05225,ko05226,ko05230,ko05231,map01521,map01522,map03015,map03450,map04012,map04066,map04072,map04110,map04136,map04138,map04139,map04140,map04150,map04151,map04152,map04211,map04212,map04213,map04218,map04371,map04630,map04659,map04714,map04910,map04919,map04920,map04930,map04931,map05165,map05167,map05200,map05205,map05206,map05210,map05212,map05214,map05215,map05221,map05224,map05225,map05226,map05230,map05231
KEGG ModuleM00297
Hectar predicted targeting categoryother localisation
EggNOG free text desc.phosphatidylinositol kinase activity
EggNOG OGsCOG5032@1,KOG0891@2759
Ec32 ortholog descriptionArmadillo-like fold protein
Ec32 orthologEc-00_008550.1
EC2.7.11.1
COG Functional cat.BDLTU
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03019,ko03032,ko03400,ko04131
Exons1
Model size192
Cds size192
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930032.5610695-CDS-H-paniculata_contig33411:82..2741622930032.5610695-CDS-H-paniculata_contig33411:82..274Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33411 83..274 +
1691481118.4896348-CDS-H-paniculata_contig33411:82..2741691481118.4896348-CDS-H-paniculata_contig33411:82..274Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33411 83..274 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig33411.8954.1prot_H-paniculata_contig33411.8954.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig33411 83..274 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig33411.8954.1

>prot_H-paniculata_contig33411.8954.1 ID=prot_H-paniculata_contig33411.8954.1|Name=mRNA_H-paniculata_contig33411.8954.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=64bp
MQKINCPPPPPLVPPFSLCSWDGQGAAWAIRSLRLAIEEQGDERPGPVFT
ALLRYSTYIYTRT*
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mRNA from alignment at H-paniculata_contig33411:83..274+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig33411.8954.1 ID=mRNA_H-paniculata_contig33411.8954.1|Name=mRNA_H-paniculata_contig33411.8954.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=192bp|location=Sequence derived from alignment at H-paniculata_contig33411:83..274+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAAAAAATAAATTGCCCCCCCCCCCCCCCCCTCGTCCCCCCCTTCAG
CTTGTGCAGCTGGGATGGCCAGGGAGCAGCGTGGGCCATCCGTTCCCTCA
GGCTAGCCATCGAGGAACAGGGTGACGAAAGACCCGGGCCAGTCTTTACC
GCCCTTCTGAGGTACAGTACATATATATATACACGCACATAG
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Coding sequence (CDS) from alignment at H-paniculata_contig33411:83..274+

>mRNA_H-paniculata_contig33411.8954.1 ID=mRNA_H-paniculata_contig33411.8954.1|Name=mRNA_H-paniculata_contig33411.8954.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=384bp|location=Sequence derived from alignment at H-paniculata_contig33411:83..274+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAAAAAATAAATTGCCCCCCCCCCCCCCCCCTCGTCCCCCCCTTCAG
CTTGTGCAGCTGGGATGGCCAGGGAGCAGCGTGGGCCATCCGTTCCCTCA
GGCTAGCCATCGAGGAACAGGGTGACGAAAGACCCGGGCCAGTCTTTACC
GCCCTTCTGAGGTACAGTACATATATATATACACGCACATAGATGCAAAA
AATAAATTGCCCCCCCCCCCCCCCCCTCGTCCCCCCCTTCAGCTTGTGCA
GCTGGGATGGCCAGGGAGCAGCGTGGGCCATCCGTTCCCTCAGGCTAGCC
ATCGAGGAACAGGGTGACGAAAGACCCGGGCCAGTCTTTACCGCCCTTCT
GAGGTACAGTACATATATATATACACGCACATAG
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