mRNA_H-paniculata_contig334.8952.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig334.8952.1 vs. uniprot
Match: D8LBR8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBR8_ECTSI) HSP 1 Score: 485 bits (1249), Expect = 4.040e-163 Identity = 286/541 (52.87%), Postives = 348/541 (64.33%), Query Frame = 1
Query: 1 DPNDPLPRTMEEVYRQLRLNPPVDPRTRDDDCFS--SRDLEIVQDIVSDVCGPLADEHESWWEDNGEELERVVM--GVTSGSLRSETRAGKMPLVWAWSELC-DGVDDRSSKSEVETAFSLTAYKAGGAEM-LEGGDST-------FERTPMALYWDSLPDVASTKRVYAHNAVDRMAALKYMMNCTDNDMHGKAGTRLTGHFLWGYADQLDWMRRSGRLSSTPDSIKIDRDSWWGLRRAQWAAHLESLDAVEALYGASLDALPP-AEREFARGWCRAARLFAAAAAHTNLDRRIYTLGAGYPPERILKARQEKVDVDNEDY--------------SVPHGPPELVAEANADP-VARRNTRRCIRSVRWLGNLPAPAFAAIRLMWRRACMSYPARRTAAQVLHRACYGGVVAKAKAWGRSMLNMFLPNLNYRKLTPPFGVDPAEEVEFDPDFERRDPTKPLPRPPGSHPLNPLQQPWYDGPRPQYRAGGPLEDG----DDGLTGS------YGGMFPPGREISDMGFEASEREEREMEEML 1506
DP+DPLPRTMEE+YR++ PP++ + + ++ +V++ V E ++WW++NG+E +R+ G R E R G + VW + + + E FSL+AYKAG E + G+ + FERTP A YW+S+PD+ + RVYA+NAVDRMAALK++MNCT N MHG A + +GHFLWGY DQLDWMRRSGRLSSTP SIK +R +RRAQWAAHLESLDAVEALYG D LP AEREFARGWCRAARLFA AAAHTNL+R + LGAGY PER+L D++D+ SVP GPP+ VAEA D V NTRRC+ SVRWLG L AP A + +WRR+C SYPARR A+VL ACYGG AKA AW +S L +F+P+LNYRKLT P GVDPAEEVE+DPDFE RD +KP PRP GS PLNPLQ PWY+G RP AG P +G DDGL S GGMFPPGRE D FEA +R E+E+ E L
Sbjct: 53 DPDDPLPRTMEELYRRIASEPPLNLEQQYKKALEPDAEEMGMVEEAVRATF--KCTEDDAWWDENGQEWDRMAENPGKHFALGREEDRGGGV--VWGMQDYFGEEAPEWGLSDEPAVNFSLSAYKAGIPERPAKDGEGSGRQAAELFERTPFAQYWESVPDLRTAGRVYAYNAVDRMAALKFLMNCTYNGMHGSAESMQSGHFLWGYVDQLDWMRRSGRLSSTPGSIK-ER-----IRRAQWAAHLESLDAVEALYGKEFDMLPSRAEREFARGWCRAARLFAVAAAHTNLERCLLPLGAGYAPERLL--------TDDDDFLTAAARKQGPRSLESVPFGPPDSVAEAERDSAVVALNTRRCVTSVRWLGTLRAPVLAGLCRLWRRSCASYPARRRVARVLREACYGGRRAKAAAWAKSFLFLFVPDLNYRKLTFPLGVDPAEEVEYDPDFEPRDFSKPYPRPVGSRPLNPLQWPWYEGRRPDPSAGLPGGEGWGEDDDGLLASPSAVAAAGGMFPPGREPVDGSFEAGQRREQEVMEDL 575
BLAST of mRNA_H-paniculata_contig334.8952.1 vs. uniprot
Match: A0A6H5KEJ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEJ4_9PHAE) HSP 1 Score: 280 bits (716), Expect = 3.230e-84 Identity = 182/445 (40.90%), Postives = 227/445 (51.01%), Query Frame = 1
Query: 1 DPNDPLPRTMEEVYRQLRLNPPVDPRTRDDDCFS--SRDLEIVQDIVSDVCGPLADEHESWWEDNGEELERVVM--GVTSGSLRSETRAGKMPLVWAWSELC-DGVDDRSSKSEVETAFSLTAYKAG----GAEMLEG----GDSTFERTPMALYWDSLPDVASTKRVYAHNAVDRMAALKYMMNCTDNDMHGKAGTRLTGHFLWGYADQLDWMRRSGRLSSTPDSIKIDRDSWWG------------------------------------------------------------------------------------LRRAQWAAHLESLDAVEALYGASLDALPP-AEREFARGWCRAARLFAAAAAHTNLDRRIYTLGAGYPPERILKARQEKVDVDNEDY--------------SVPHGPPELVAEANADPVARRNTRR 999
DP+DPLPRTMEE+YR++ PP++ + + ++ +V++ V E ++WW++NG+E +R+ G R E R G + VW + + + E FSL+AYKAG A+ EG FERTP A YW+S+PD+ + RVYA+NAVDRMAALK++MNCT N MHG A + +GHFLWGY DQLDWMRRSGRLSSTP SIK+D +SWWG +RRAQWAAHLESLDAVEALYG D LP AEREFARGWCRAARLFAAAAAHTNL+R + LGAGY PER+L D++D+ SVP GPP+LVAEA D N R
Sbjct: 53 DPDDPLPRTMEELYRRIASEPPLNLEQQYKKALEPDAEEIGMVEEAVRATF--KCTEDDAWWDENGQEWDRMAENPGEHFALGREEDRGGGV--VWGMQDYFGEEAPEWGLSDEPAVNFSLSAYKAGIPGRAAKDGEGRGREAAELFERTPFAQYWESVPDLRAAGRVYAYNAVDRMAALKFLMNCTYNGMHGSAESMQSGHFLWGYVDQLDWMRRSGRLSSTPGSIKVDPNSWWGRVSFALTIVPLVAAVESGAWDDDQVAAISVLGVSGDGSGRNDDLQLPELRRAVRAWRRVWRFRDPDIADRVVLDMPVHDSLQERVRRAQWAAHLESLDAVEALYGKEFDMLPSKAEREFARGWCRAARLFAAAAAHTNLERCLLPLGAGYAPERLL--------TDDDDFLTAAARKQGPRSLESVPFGPPDLVAEAERDSAVAGNAGR 485
BLAST of mRNA_H-paniculata_contig334.8952.1 vs. uniprot
Match: A0A813LR03_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813LR03_POLGL) HSP 1 Score: 88.6 bits (218), Expect = 7.330e-15 Identity = 87/320 (27.19%), Postives = 129/320 (40.31%), Query Frame = 1
Query: 355 YKAGGAEMLEGGDSTFERTPMALYWDSLP-------DVASTKRVYAHNAVDRMAALKYMMNCTDND---MHGKAGTRLTGHFLWGYADQLDWMRRSGRLSSTPDSIKIDRDSWWGLRR-------------------------------------AQWAAHLESLDAVEALYGASLDALPPAEREFARGWCRAARLFAAAAAHTNLDRRIYTLGAGYPPERILKARQEKVDVDNEDYSVPHGPPELVAEANADPVARRNTRRCIRSVRWLGNLPAPAFAAIRLMWRRACMSYPARRTAAQVLHRACYGGVVAKAKAWGRS 1173
++AGG + E +F TP+A YW+++ D + +YA ++ A + T +D +HG + HFLWGYA QLDW RSGRL I +SWWG A W AH +L+A LY A P +E+ F GW R + AA T+LD I GAGY P +L A + +D +V G + + VAR + ++ R NL AF+ + W+R ++ R A V+ + +K +A GR+
Sbjct: 100 WRAGGWALTE---KSFAATPLAAYWETIDNRPLAADDFFGRQAIYARIMGEKRLAPLF----TRSDGLLLHGLP----SAHFLWGYAVQLDWQWRSGRLGCEVGDSSIAPESWWGRMNYTLCALPYVAAADAGLLELASEFVASGGAEEASRPELAVWKAHTATLNAATPLYSAEFALQPVSEQSFGAGWARFVEVLAALHFRTDLDF-IAQTGAGYLPPHVLDAAGQ-----GDDNTVRGGD-----ACSPEDVAR--IQETVQITRQTNNLGDCAFSLMLGFWQRIGRNFQCRVAAPAVIQSS------SKPEAKGRA 389
BLAST of mRNA_H-paniculata_contig334.8952.1 vs. uniprot
Match: A0A7W0QFG1_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7W0QFG1_9DELT) HSP 1 Score: 81.3 bits (199), Expect = 3.190e-13 Identity = 74/252 (29.37%), Postives = 94/252 (37.30%), Query Frame = 1
Query: 535 HGKAGTRLTGHFLWGYADQLDWMRRSGRLSSTPDSIKIDRDSWWGL---------------------------------------------------------RRAQWAAHLESLDAVEALYGASLDALPPAEREFARGWCRAARLFAAAAAHTNLDRRIYTLGAGYPPERILKARQEKVDVDNEDYSVPHGPPELVAEANADPVARRNTRRCIRSVRWLGNLPAPAFAAIRLMWRRACMSYPARRTAAQVL 1119
HG GT + LWGYA QL W RSGRL +P +I SWWG R A W AHL S+ L+ A+P AE+ FARGW R LFAAAA T+L++ I T G G P R+L+A D+ R R +R V L + PA +AA +WRR + AR A ++L
Sbjct: 55 HGGFGTHDELNPLWGYASQLAWQHRSGRLGESPYAIAPT--SWWGACNYALCVVPYVAAMQLGLVPELAVDVARAYEPALTAWREALRTMTTMTAAVCDHDAARVAIWRAHLASITLAVTLHEREYRAMPEAEQRFARGWVRMVDLFAAAAVRTDLEKLIET-GGGALPSRVLRAGDPHDDLP------------------------RYERSTVRRVGELADHPAWRWAAAMRIWRRMMRTRTARLDAERLL 279
BLAST of mRNA_H-paniculata_contig334.8952.1 vs. uniprot
Match: A0A7Y6PRB0_9DELT (Uncharacterized protein n=1 Tax=Kofleriaceae bacterium TaxID=2212474 RepID=A0A7Y6PRB0_9DELT) HSP 1 Score: 70.9 bits (172), Expect = 7.280e-10 Identity = 65/236 (27.54%), Postives = 84/236 (35.59%), Query Frame = 1
Query: 571 LWGYADQLDWMRRSGRLSSTPDSIKIDRDSWWG-----------------------------------------------------LRRAQWAAHLESLDAVEALYGASLDALPPAEREFARGWCRAARLFAAAAAHTNLDRRIYTLGAGYPPERILKARQEKVDVDNEDYSVPHGPPELVAEANADPVARRNTRRCIRSVRWLGNLPAPAFAAIRLMWRRACMSYPARRTAAQVL 1119
WGYA QL W RSGRL S PDS I+ +SWWG +R + W AH S+ ++ LP E+ FARGW R LFAAA T+LD+ I G G P +L+ K +P R+ R R V LG+ PA + WRR S AR + ++L
Sbjct: 62 FWGYASQLAWQHRSGRLGS-PDSFAIEAESWWGCCNYALSVVPYVAAMHADLVPRLPITVPPRYATVLPLWQDALRAMRAGSDLDAIRLSVWRAHQISITHAVEMHERECARLPAPEQRFARGWTRMVDLFAAAGIRTDLDK-IVESGGGALPSALLEGENVK--------DMP-----------------RHERSSARRVTALGDRPAWRWRLELATWRRIMRSREARADSERLL 270
BLAST of mRNA_H-paniculata_contig334.8952.1 vs. uniprot
Match: A0A813EK21_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813EK21_POLGL) HSP 1 Score: 64.7 bits (156), Expect = 1.750e-7 Identity = 60/202 (29.70%), Postives = 86/202 (42.57%), Query Frame = 1
Query: 355 YKAGGAEMLEGGDSTFERTPMALYWDSL-------PDVASTKRVYAHNAVDRMAALKYMMNCTDND---MHGKAGTRLTGHFLWGYADQLDWMRRSGRLSSTPDSIKIDRDSWWGLRR---------AQWAAHLESLDAVEALYGASLDALPPAEREFARGWCRAARLFAAAAAHTNLDRRIYTLGAGYPPERILKARQEKV 903
++AGG + E +F TP+A YW+++ D + +YA ++ A + T +D +HG + HFLWGYA QLDW RSGRL I +SWWG A A L LD+ +G + +A P EFA A L+ NL R+ + G +R A Q +V
Sbjct: 91 WRAGGWALTE---KSFAATPLAAYWETIGNRPLAADDFFGRQAIYARIMGEKRLAPLF----TRSDGLLLHGLP----SAHFLWGYAVQLDWQWRSGRLGCEAGDSSIAPESWWGRMNYTLCALPYVAAADAGLLELDSEFVAFGGAEEASRP---EFAEARALWAELW------RNLLHRLASAGGAPLTDRERDALQSEV 272
BLAST of mRNA_H-paniculata_contig334.8952.1 vs. uniprot
Match: A0A813HCT4_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813HCT4_POLGL) HSP 1 Score: 62.8 bits (151), Expect = 7.520e-7 Identity = 39/113 (34.51%), Postives = 55/113 (48.67%), Query Frame = 1
Query: 355 YKAGGAEMLEGGDSTFERTPMALYWDSLP-------DVASTKRVYAHNAVDRMAALKYMMNCTDNDM-HGKAGTRLTGHFLWGYADQLDWMRRSGRLSSTPDSIKIDRDSWWG 669
++AGG + E + F TP+A YW+++ D + +YA + R L + +D + HG + HFLWGYA QLDW RSGRL I +SWWG
Sbjct: 107 WRAGGWALTE---TNFASTPLAAYWETIDNRPLVADDFFGRQAIYAR--IMREKRLAPLFTRSDGLLLHGLP----SAHFLWGYAVQLDWQWRSGRLGCEVGDSSIAPESWWG 210
BLAST of mRNA_H-paniculata_contig334.8952.1 vs. uniprot
Match: A0A813EZ43_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813EZ43_POLGL) HSP 1 Score: 62.0 bits (149), Expect = 1.300e-6 Identity = 39/115 (33.91%), Postives = 55/115 (47.83%), Query Frame = 1
Query: 355 YKAGGAEMLEGGDSTFERTPMALYWDSLP-------DVASTKRVYAHNAVDRMAALKYMMNCTDND---MHGKAGTRLTGHFLWGYADQLDWMRRSGRLSSTPDSIKIDRDSWWG 669
++AGG + E F TP+A YW+++ D + +YA ++ A + T +D +HG + HFLWGYA QLDW RSGRL I +SWWG
Sbjct: 100 WRAGGWALTE---KKFAATPLAAYWETIDNRPLAADDFFGRQAIYARIMGEKRLAPLF----TRSDGLLLHGLP----SAHFLWGYAVQLDWQWRSGRLGCEVGDSSIAPESWWG 203
BLAST of mRNA_H-paniculata_contig334.8952.1 vs. uniprot
Match: A0A7S1YVL5_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YVL5_9STRA) HSP 1 Score: 56.6 bits (135), Expect = 5.530e-5 Identity = 36/98 (36.73%), Postives = 49/98 (50.00%), Query Frame = 1
Query: 424 YWDSLPDVA-------STKRVYAHNAVDRMAALKYMM--NCTDNDMHGKAGTRLTGHFLWGYADQLDWMRRSGRLSS-TPDS------IKIDRDSWWG 669
YWD LP + +T + +N + RMA K +M + T + G H+LW Y QLDW RRSGRLS T D+ + I +DSW+G
Sbjct: 6 YWDDLPTLTKKESTTTTTIIIDPYNFLHRMAISKLVMEHHTTAGSVVSIWGKNHEKHWLWAYLGQLDWQRRSGRLSDPTTDTKAVEKDVTISKDSWFG 103 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig334.8952.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig334.8952.1 >prot_H-paniculata_contig334.8952.1 ID=prot_H-paniculata_contig334.8952.1|Name=mRNA_H-paniculata_contig334.8952.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=494bp MEEVYRQLRLNPPVDPRTRDDDCFSSRDLEIVQDIVSDVCGPLADEHESWback to top mRNA from alignment at H-paniculata_contig334:25883..28230- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig334.8952.1 ID=mRNA_H-paniculata_contig334.8952.1|Name=mRNA_H-paniculata_contig334.8952.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2348bp|location=Sequence derived from alignment at H-paniculata_contig334:25883..28230- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig334:25883..28230- >mRNA_H-paniculata_contig334.8952.1 ID=mRNA_H-paniculata_contig334.8952.1|Name=mRNA_H-paniculata_contig334.8952.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2964bp|location=Sequence derived from alignment at H-paniculata_contig334:25883..28230- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |