mRNA_H-paniculata_contig33388.8946.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig33388.8946.1
Unique NamemRNA_H-paniculata_contig33388.8946.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig33388.8946.1 vs. uniprot
Match: A0A8F0F7A5_9PHAE (Uncharacterized protein ycf35 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F7A5_9PHAE)

HSP 1 Score: 204 bits (518), Expect = 1.780e-65
Identity = 107/134 (79.85%), Postives = 115/134 (85.82%), Query Frame = 1
Query:    1 MSHYTSIQTKYTNKGILRKVLKTLSYAYTENKSGNNIEILLLPTKKLSNSIYNNDCNDYLSLKLNLNDLSYNLITDSQSWTQKTLITGFLKDLELNYGYSETISQALELGFTRSKIINNDNNTKFIFQRCVEIK 402
            MSHYTSIQTKYT+  IL+KVLK LSYAYTE+K G NIEIL LP KKLSNSIYNN+ NDYLSL LN  + SYN+ITDSQSW QK LI  FLKDLELNYGYSETI QAL+LGF RSKII+NDNN KFIFQRCVEIK
Sbjct:    1 MSHYTSIQTKYTSFKILKKVLKNLSYAYTEDKLGKNIEILFLPYKKLSNSIYNNNYNDYLSLSLN--NKSYNMITDSQSWAQKELIAEFLKDLELNYGYSETIFQALQLGFIRSKIISNDNNIKFIFQRCVEIK 132          
BLAST of mRNA_H-paniculata_contig33388.8946.1 vs. uniprot
Match: A0A8F0F8T3_9PHAE (Uncharacterized protein ycf35 n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0F8T3_9PHAE)

HSP 1 Score: 167 bits (423), Expect = 5.390e-51
Identity = 83/135 (61.48%), Postives = 106/135 (78.52%), Query Frame = 1
Query:    1 MSHYTSIQTKYTNKGILRKVLKTLSYAYTENKSGNNIEILLLPTKKLSNSIYNNDCNDYLSLKLNLNDLSYNLITDSQSWTQKTLITGFLKDLELNYGYSETISQALELGFTRSKIINNDN-NTKFIFQRCVEIK 402
            MSHYTSI+TKYTN  +L+KV+  L Y Y E+K   +IE+ L+ +K L +SIYNN C +YLS K +  +LSY++ITDSQSWTQK +I  FLK LELNYGYSETI+QALELGF RSK++  +N N +F+FQRCVE+K
Sbjct:    1 MSHYTSIKTKYTNSNVLKKVINKLGYPYIEHKYNKDIEVPLVFSKNLKSSIYNNSCQNYLSFKFD--NLSYSIITDSQSWTQKEVINRFLKKLELNYGYSETITQALELGFVRSKVLTTNNKNNRFVFQRCVEVK 133          
BLAST of mRNA_H-paniculata_contig33388.8946.1 vs. uniprot
Match: A0A0R6M4I4_UNDPI (Uncharacterized protein ycf35 n=27 Tax=Laminariales TaxID=2886 RepID=A0A0R6M4I4_UNDPI)

HSP 1 Score: 157 bits (396), Expect = 6.700e-47
Identity = 79/135 (58.52%), Postives = 104/135 (77.04%), Query Frame = 1
Query:    1 MSHYTSIQTKYTNKGILRKVLKTLSYAYTENKSGNNIEILLLPTKKLSNSIYNNDCNDYLSLKLNLNDLSYNLITDSQSWTQKTLITGFLKDLELNYGYSETISQALELGFTRSKIINNDN-NTKFIFQRCVEIK 402
            MSHYTSI+TKYTN  +L+KV+  L Y Y E+ + NNIE+ ++  K L +SIY N   +YL+ K N  +LSY++ITDSQSWTQK +I+ FLK LELNYGYSETI QAL+LGF RSK++  +N N +F+FQRC+E+K
Sbjct:    1 MSHYTSIKTKYTNSNVLKKVINKLGYPYIEHNN-NNIEVPVIFPKNLKSSIYENSDQNYLAFKSN--NLSYDIITDSQSWTQKEIISNFLKKLELNYGYSETIHQALDLGFVRSKVLTTNNKNNRFVFQRCIEVK 132          
BLAST of mRNA_H-paniculata_contig33388.8946.1 vs. uniprot
Match: A0A8F0JZI3_9PHAE (Uncharacterized protein ycf35 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0JZI3_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 1.320e-44
Identity = 77/136 (56.62%), Postives = 100/136 (73.53%), Query Frame = 1
Query:    1 MSHYTSIQTKYTNKGILRKVLKTLSYAYTENKSGNNIEILLLPTKKLSNSIYNNDCNDYLSLKLNLNDLSYNLITDSQSWTQKTLITGFLKDLELNYGYSETISQALELGFTRSKIINNDN-NTKFIFQRCVEIKS 405
            MSHYTSI+TKYTN  +L+KV+  L Y YTE      IE+ ++  K L +SIY++   +YL+ +     LSY+++TDSQSWTQK +I  FLK LELNYGY ETI+QAL+LGF RSK+I  +N N +FIFQRCVE+KS
Sbjct:    1 MSHYTSIKTKYTNLNVLKKVINKLGYPYTEQNFAKKIEVSIIHPKDLKSSIYDSYSQNYLAFQST--KLSYDMVTDSQSWTQKEIINTFLKKLELNYGYLETINQALDLGFIRSKVITTNNKNNRFIFQRCVEVKS 134          
BLAST of mRNA_H-paniculata_contig33388.8946.1 vs. uniprot
Match: A0A6B7EZ45_9PHAE (Uncharacterized protein ycf35 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EZ45_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 7.600e-44
Identity = 81/135 (60.00%), Postives = 98/135 (72.59%), Query Frame = 1
Query:    1 MSHYTSIQTKYTNKGILRKVLKTLSYAYTENKSGNNIEILLLPTKKLSNSIYNNDCNDYLSLKLNLNDLSYNLITDSQSWTQKTLITGFLKDLELNYGYSETISQALELGFTRSKIIN-NDNNTKFIFQRCVEIK 402
            MSHYTSI+TKYTN  IL+KV+  L + Y E+    NIEI +  +K L + IY N  ++YLS +L   DLSYN+ITDSQSWTQK     FLK +ELNYGYSETI+QALELGF RSK++  N NN +FIFQR VE K
Sbjct:    1 MSHYTSIKTKYTNPVILKKVINKLGHPYVEHNFNKNIEIPMHFSKTLKSKIYENSNDNYLSFELR--DLSYNIITDSQSWTQKEKTNVFLKKIELNYGYSETIAQALELGFIRSKVLTTNKNNNRFIFQRYVETK 133          
BLAST of mRNA_H-paniculata_contig33388.8946.1 vs. uniprot
Match: A0A8F0JYK6_9PHAE (Uncharacterized protein ycf35 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0JYK6_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 2.520e-42
Identity = 74/135 (54.81%), Postives = 99/135 (73.33%), Query Frame = 1
Query:    1 MSHYTSIQTKYTNKGILRKVLKTLSYAYTENKSGNNIEILLLPTKKLSNSIYNNDCNDYLSLKLNLNDLSYNLITDSQSWTQKTLITGFLKDLELNYGYSETISQALELGFTRSKIIN-NDNNTKFIFQRCVEIK 402
            MSHYTSI+TKYTN  +L++ +  L Y + E+    NIE+ L  +  L +SIY+N  N+YL LK    DLSYN+ITD QSWT+K +I  FLK LELNYGY+ETI+QA++LGF RSK++  N+ N +F+FQR VE+K
Sbjct:    1 MSHYTSIKTKYTNSRVLKEAINKLGYPFVEHHFNKNIEVSLNFSGNLKSSIYDNSQNNYLGLKKK--DLSYNIITDHQSWTEKEVINIFLKKLELNYGYAETINQAIDLGFVRSKVLTANNKNNRFVFQRYVEVK 133          
BLAST of mRNA_H-paniculata_contig33388.8946.1 vs. uniprot
Match: D1J707_ECTSI (Uncharacterized protein ycf35 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J707_ECTSI)

HSP 1 Score: 145 bits (365), Expect = 3.570e-42
Identity = 79/135 (58.52%), Postives = 99/135 (73.33%), Query Frame = 1
Query:    1 MSHYTSIQTKYTNKGILRKVLKTLSYAYTENKSGNNIEILLLPTKKLSNSIYNNDCNDYLSLKLNLNDLSYNLITDSQSWTQKTLITGFLKDLELNYGYSETISQALELGFTRSKIIN-NDNNTKFIFQRCVEIK 402
            MSHYTSI+TKYTN  IL+KV+  L + Y E+    NIE+ L  +K L ++IY+N   +YL+  LN  +LSY++ITDSQSWTQK  I  FLK +ELNYGYSETI+QAL+LGF RSK+   N  N +FIFQR VEIK
Sbjct:    1 MSHYTSIKTKYTNPTILKKVITKLGHPYVEHNFNKNIEVPLNSSKTLKSNIYSNLNQNYLAFVLN--NLSYSIITDSQSWTQKERINIFLKKIELNYGYSETITQALDLGFIRSKVFTTNKKNNRFIFQRYVEIK 133          
BLAST of mRNA_H-paniculata_contig33388.8946.1 vs. uniprot
Match: A0A7T8G5F1_SCYLO (Uncharacterized protein ycf35 n=4 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A7T8G5F1_SCYLO)

HSP 1 Score: 144 bits (363), Expect = 7.190e-42
Identity = 78/135 (57.78%), Postives = 99/135 (73.33%), Query Frame = 1
Query:    1 MSHYTSIQTKYTNKGILRKVLKTLSYAYTENKSGNNIEILLLPTKKLSNSIYNNDCNDYLSLKLNLNDLSYNLITDSQSWTQKTLITGFLKDLELNYGYSETISQALELGFTRSKIIN-NDNNTKFIFQRCVEIK 402
            MSHYTSI+TKYTN  IL+KV+  L + Y E+     IE+ +  +K L +SIYN+   +YL+    L +LSY++ITDSQSWTQK  I  FLK +ELNYGYSETI+QAL+LGF RSK++  N NN +FIFQR VEIK
Sbjct:    1 MSHYTSIKTKYTNPNILKKVINKLGHPYVEHNLNKTIEVPINFSKSLKSSIYNDLNQNYLAF--GLRNLSYDIITDSQSWTQKERINIFLKKIELNYGYSETITQALDLGFIRSKVLTTNRNNNRFIFQRYVEIK 133          
BLAST of mRNA_H-paniculata_contig33388.8946.1 vs. uniprot
Match: A0A2I4Q2L8_9PHAE (Uncharacterized protein ycf35 n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2L8_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 2.740e-41
Identity = 74/134 (55.22%), Postives = 101/134 (75.37%), Query Frame = 1
Query:    1 MSHYTSIQTKYTNKGILRKVLKTLSYAYTENKSGNNIEILLLPTKKLSNSIYNNDCNDYLSLKLNLNDLSYNLITDSQSWTQKTLITGFLKDLELNYGYSETISQALELGFTRS-KIINNDNNTKFIFQRCVEI 399
            MSHYT+I+TKY N  +L+K +  L++ YTE+K   NIEI  +P+K+LS  +Y  + +DY+S +LN   L+Y++++D QSWTQK  +  FLK LE+NYGYSETISQALELGFTRS K++ N  N KFIFQR V++
Sbjct:    1 MSHYTAIRTKYKNSLLLKKCINKLNHPYTEHKR--NIEIYTIPSKQLSVGLYQKNYSDYISFQLN--KLNYDMVSDLQSWTQKDSLNEFLKKLEVNYGYSETISQALELGFTRSRKVLGNKENNKFIFQRYVQV 130          
BLAST of mRNA_H-paniculata_contig33388.8946.1 vs. uniprot
Match: A0A2R4QPY7_9PHAE (Uncharacterized protein ycf35 n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QPY7_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 8.850e-41
Identity = 76/137 (55.47%), Postives = 99/137 (72.26%), Query Frame = 1
Query:    1 MSHYTSIQTKYTNKGILRKVLKTLSYAYTENK--SGNNIEILLLPTKKLSNSIYNNDCNDYLSLKLNLNDLSYNLITDSQSWTQKTLITGFLKDLELNYGYSETISQALELGFTRSKIINNDN-NTKFIFQRCVEIK 402
            MSHYT I+TKYTN  IL+KV+  L Y Y ENK     NIE+ ++ ++ L ++IY  +  +Y++ K +   L Y++ITDSQSWT+K +IT FLK LELNYGYSETI QAL+LGF RSK+I  +N N +FIFQR VE K
Sbjct:    1 MSHYTCIKTKYTNSNILKKVINKLGYPYIENKCQKNQNIEVPVIFSENLKSTIYQKNHRNYVAFKSD--KLDYDIITDSQSWTKKEIITRFLKKLELNYGYSETIYQALDLGFVRSKVITTNNKNNRFIFQRFVETK 135          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig33388.8946.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A8F0F7A5_9PHAE1.780e-6579.85Uncharacterized protein ycf35 n=1 Tax=Protohalopte... [more]
A0A8F0F8T3_9PHAE5.390e-5161.48Uncharacterized protein ycf35 n=2 Tax=Laminariales... [more]
A0A0R6M4I4_UNDPI6.700e-4758.52Uncharacterized protein ycf35 n=27 Tax=Laminariale... [more]
A0A8F0JZI3_9PHAE1.320e-4456.62Uncharacterized protein ycf35 n=1 Tax=Desmarestia ... [more]
A0A6B7EZ45_9PHAE7.600e-4460.00Uncharacterized protein ycf35 n=1 Tax=Cladosiphon ... [more]
A0A8F0JYK6_9PHAE2.520e-4254.81Uncharacterized protein ycf35 n=1 Tax=Chorda asiat... [more]
D1J707_ECTSI3.570e-4258.52Uncharacterized protein ycf35 n=2 Tax=Ectocarpus s... [more]
A0A7T8G5F1_SCYLO7.190e-4257.78Uncharacterized protein ycf35 n=4 Tax=Scytosiphona... [more]
A0A2I4Q2L8_9PHAE2.740e-4155.22Uncharacterized protein ycf35 n=1 Tax=Dictyopteris... [more]
A0A2R4QPY7_9PHAE8.850e-4155.47Uncharacterized protein ycf35 n=3 Tax=Fucaceae Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig33388contigH-paniculata_contig33388:533..940 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size408
Cds size408
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930031.4593544-CDS-H-paniculata_contig33388:532..9401622930031.4593544-CDS-H-paniculata_contig33388:532..940Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33388 533..940 +
1691481117.9673095-CDS-H-paniculata_contig33388:532..9401691481117.9673095-CDS-H-paniculata_contig33388:532..940Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33388 533..940 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig33388.8946.1prot_H-paniculata_contig33388.8946.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig33388 533..940 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig33388.8946.1

>prot_H-paniculata_contig33388.8946.1 ID=prot_H-paniculata_contig33388.8946.1|Name=mRNA_H-paniculata_contig33388.8946.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=136bp
MSHYTSIQTKYTNKGILRKVLKTLSYAYTENKSGNNIEILLLPTKKLSNS
IYNNDCNDYLSLKLNLNDLSYNLITDSQSWTQKTLITGFLKDLELNYGYS
ETISQALELGFTRSKIINNDNNTKFIFQRCVEIKS*
back to top

mRNA from alignment at H-paniculata_contig33388:533..940+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig33388.8946.1 ID=mRNA_H-paniculata_contig33388.8946.1|Name=mRNA_H-paniculata_contig33388.8946.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=408bp|location=Sequence derived from alignment at H-paniculata_contig33388:533..940+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCTCATTATACTTCTATTCAAACGAAATATACTAATAAAGGTATACT AAGAAAAGTTCTTAAAACTTTAAGTTATGCTTACACTGAAAATAAATCAG GCAACAATATTGAAATTCTTCTATTACCTACTAAGAAGTTATCTAATAGT ATATATAATAATGATTGTAATGATTATTTATCACTTAAACTAAATTTAAA TGACCTATCATATAATCTAATTACTGATTCTCAATCTTGGACGCAAAAAA CATTGATTACTGGTTTTTTAAAAGATCTAGAACTAAATTATGGTTATTCT GAAACAATTTCTCAAGCTCTTGAGTTAGGTTTTACTAGATCTAAAATCAT AAATAATGATAATAATACAAAATTTATCTTTCAAAGATGTGTTGAAATTA AATCATAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig33388:533..940+

>mRNA_H-paniculata_contig33388.8946.1 ID=mRNA_H-paniculata_contig33388.8946.1|Name=mRNA_H-paniculata_contig33388.8946.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=816bp|location=Sequence derived from alignment at H-paniculata_contig33388:533..940+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCTCATTATACTTCTATTCAAACGAAATATACTAATAAAGGTATACT
AAGAAAAGTTCTTAAAACTTTAAGTTATGCTTACACTGAAAATAAATCAG
GCAACAATATTGAAATTCTTCTATTACCTACTAAGAAGTTATCTAATAGT
ATATATAATAATGATTGTAATGATTATTTATCACTTAAACTAAATTTAAA
TGACCTATCATATAATCTAATTACTGATTCTCAATCTTGGACGCAAAAAA
CATTGATTACTGGTTTTTTAAAAGATCTAGAACTAAATTATGGTTATTCT
GAAACAATTTCTCAAGCTCTTGAGTTAGGTTTTACTAGATCTAAAATCAT
AAATAATGATAATAATACAAAATTTATCTTTCAAAGATGTGTTGAAATTA
AATCATAGATGTCTCATTATACTTCTATTCAAACGAAATATACTAATAAA
GGTATACTAAGAAAAGTTCTTAAAACTTTAAGTTATGCTTACACTGAAAA
TAAATCAGGCAACAATATTGAAATTCTTCTATTACCTACTAAGAAGTTAT
CTAATAGTATATATAATAATGATTGTAATGATTATTTATCACTTAAACTA
AATTTAAATGACCTATCATATAATCTAATTACTGATTCTCAATCTTGGAC
GCAAAAAACATTGATTACTGGTTTTTTAAAAGATCTAGAACTAAATTATG
GTTATTCTGAAACAATTTCTCAAGCTCTTGAGTTAGGTTTTACTAGATCT
AAAATCATAAATAATGATAATAATACAAAATTTATCTTTCAAAGATGTGT
TGAAATTAAATCATAG
back to top