mRNA_H-paniculata_contig3338.8945.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig3338.8945.1 vs. uniprot
Match: D7FTC7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTC7_ECTSI) HSP 1 Score: 417 bits (1073), Expect = 1.520e-128 Identity = 257/501 (51.30%), Postives = 318/501 (63.47%), Query Frame = 1
Query: 4 KMLAKERQLMDV----IGAAGSRVGPHHTLGGG----GGAPGVYSVLQAAMGSRPGVGGIVQRPYSQDTGFCVFWDYVLGLPKRNGSRVIGKVRLAFGLYVGSRLQGKMMSTKWASPSASTVMQEDTRNHETCCLLETRNIFAGIPVNVQTRLVVELQFKDEGGNYIKA-KDTLGWGSMHVFKPEKGNAQRLTVRAGLTKLNLFRGRVDLRVANINDAMSALSRSTPTAAFLRLVHSEDINGAAAFVVNPETHNLYVGYGRGHLPQSERRKFMTGTFVRSIVFIAKLKLAVSASKLDKAHLKNAVEGIAPLIHIDAAKENPKLRR-ASSRYDRGTGNHTHFTASLPSSPEVMSETNAE--RGSNIDSQSKAENDIGVSAPADSTRRSNAGSSCTPQEAAAGAGTSEELHMTSSSGGDPSQKASVSGVR--RERRSSSVTSLQTHLAAQKTMAREASLGKRRRSMLSRQPFLKGDGFDLYVDAGVGMPYCCTVVKVVVRRVG 1464
K LAKERQL++V A G VG + LGGG GG V + L AA G RPGVGGIVQRPY++D GFCVFWDY+ GLPKR+GS+VIGKVRLAFGLY+G RL GKM+ST W + V +T ET LETR+ F GIPV++QT+LVVELQFKDE G K K LGWG ++VFKPEKG+ RLT+RAGLT+L LF G VDLR+AN+ND SA+SRSTPTAAF+RLVH D+N AAAFVV+P+T +LY YGRG++PQ ER+K M GTF+R+I+ + K K A+ K +A DAAK++P LRR +SS RG+ T F LP + SET +E D AD + S P E + + SEE ++ G R +ERR SS++S+ + LA QKTMAR ASL KRR+S +SRQPFLKGDGFD+Y+D GMPY CT+ KVVVR +G
Sbjct: 802 KTLAKERQLIEVQQTLTDARGGGVG-NGALGGGRLAGGGFGEVAAALHAAGGWRPGVGGIVQRPYNKDQGFCVFWDYLTGLPKRSGSKVIGKVRLAFGLYIGKRLHGKMLSTPWTDIAPRAVKNGNTGKAETFSKLETRSTFPGIPVHLQTKLVVELQFKDEAGVQRKGGKGNLGWGCIYVFKPEKGSPHRLTLRAGLTRLTLFPGSVDLRIANVNDDKSAVSRSTPTAAFIRLVHGMDMNPAAAFVVDPDTQHLYAAYGRGNIPQMERQKLMAGTFLRAILALGKFKRALVTHKRTRAS------------GGDAAKDHPPLRRRSSSPLRRGSTRRTSFK--LPRTGTFSSETRSEPQAADGTDGXXXXXXXXAKQPKADKQQASK------PDEKRSESPKSEERDSVEXXXXXXXXGSAKGGGRETKERRRSSLSSIHSQLAGQKTMARRASLSKRRQSTVSRQPFLKGDGFDIYIDRACGMPYSCTITKVVVRVIG 1281
BLAST of mRNA_H-paniculata_contig3338.8945.1 vs. uniprot
Match: A0A6H5K786_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K786_9PHAE) HSP 1 Score: 332 bits (852), Expect = 4.270e-99 Identity = 222/504 (44.05%), Postives = 277/504 (54.96%), Query Frame = 1
Query: 4 KMLAKERQLMDVIG----AAGSRVGPHHTLGG---GGGAPGVYSVLQAAMGSRPGVGGIVQRPYSQDTGFCVFWDYVLGLPKRNGSRVIGKVRLAFGLYVGSRLQGKMMSTKWASPSASTVMQEDTRNHETCCLLETRNIFAGIPVNVQTRLVVELQFKDEGGNYIKA-KDTLGWGSMHVFKPEKGNAQRLTVRAGLTKLNLFRGRVDLRVANINDAMSALSRSTPTAAFLRLVHSEDINGAAAFVVNPETHNLYVGYGRGHLPQSERRKFMTGTFVRSIVFIAKLKLAVSASKLDKAHLKNAVEGIAPLIHIDAAKENPK----LRRASSRYDRGTGNHTHFTASLPSSPEVMSETNAERGSNIDSQSKAENDIGVSAPADSTRRSNAGSSCTPQEAAAGAGTSEELHMTSSSGGDPSQKASVSGVRRERRSSSVTSLQTHL-----AAQKTMAREASLGKRRRSMLSRQPFLKGDGFDLYVDAGVGMPYCCTVVKVVVRRVG 1464
K LAKERQL++V A G G GG GGG V + L AA G RPGVGGIV+RPY++D GFCVFWDY+ GLPKR+GS+VIGKVRLAFGLY+G RL GKM ST W TV +T ET LETR+ F GIPV++QT+LVVELQFKDE G K K LGWG ++VFKPEKG+ RLT+RAGLT+L LF G VDLR+AN+ND SA+SRSTPTAAF+RLVH D+N AAAFVV+P+T +LY YGRG++ Q ER+KFM G A ++ P L+R S + R G + T S P + + + D Q AP + +RS + +ERR SS+++LQ L +AR+ +L R + +SRQPFLKGDGFD+Y+D GMPY CT+ KVVVR +G
Sbjct: 537 KTLAKERQLIEVXXTLTDARGGGAGNSVLCGGRLAGGGFSEVAAALHAAGGWRPGVGGIVERPYNKDQGFCVFWDYLTGLPKRSGSKVIGKVRLAFGLYIGKRLHGKMHSTPWTDIEPRTVKNGNTGKAETFSKLETRSTFPGIPVHLQTKLVVELQFKDEAGVQRKGGKGNLGWGCVYVFKPEKGSPHRLTLRAGLTRLTLFPGSVDLRIANVNDDKSAVSRSTPTAAFVRLVHGMDMNPAAAFVVDPDTQHLYAAYGRGNISQMERQKFMAGAC--------------------------------------AGQQGPPRGSCLKRTSFKPPRA-GKFSSETTSEPQAAGGAGDGEVAKQPKTDKQQ---------APEPNEKRSESXXXXXXX-----------XXXXXXXXXXXXXXXXXXSETKERRRSSLSALQDSLWPFCATRSAGVARKHTL-PRVCNQVSRQPFLKGDGFDIYIDRACGMPYSCTISKVVVRVIG 980
BLAST of mRNA_H-paniculata_contig3338.8945.1 vs. uniprot
Match: A0A7S2RR12_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RR12_9STRA) HSP 1 Score: 72.0 bits (175), Expect = 1.640e-9 Identity = 63/202 (31.19%), Postives = 93/202 (46.04%), Query Frame = 1
Query: 145 GVGGIVQRPYSQDTGFCVFWDYVLGLPKRNGSRVIGKVRLAFGLYVGSRLQGKMMSTKWASPSASTVMQEDTRNHETCCLLETRNIFAGIPVNVQTRLVVELQFKDEGGNYIKAKDTLGWGSMHVFKPEKGNAQRLTVRAGLTKLNLFRGRVDLR-VANINDAMSALSRSTPTAAFLRLVHSEDINGAAAFVVNPE-THNLY 744
G G QRPY +GF V++DY+LG+PKR VR+ F +Y G K + P T +ED+ ++ L+ R F +P R+V+ELQ E K ++GW +++F G+ LT G KL + L + N N T F+R++H ED A+ FVV+P T +LY
Sbjct: 577 GKAGAGQRPYDPQSGFVVYFDYILGIPKR-----FPVVRMVFCIYDGQ----KCKTPAKGLPQCET--EEDSPTKQSAMLV-ARKKFQKVPALTSLRMVMELQCVVENPYGGKNYQSIGWTVLNLFS---GDPTNLT--DGPLKLAFRKPPFKLHELENFNSISPDEGHMT---GFIRVIHGEDTEAASDFVVDPHVTQHLY 758
BLAST of mRNA_H-paniculata_contig3338.8945.1 vs. uniprot
Match: A0A7S3RYL9_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3RYL9_EMIHU) HSP 1 Score: 66.6 bits (161), Expect = 7.880e-8 Identity = 57/204 (27.94%), Postives = 91/204 (44.61%), Query Frame = 1
Query: 133 GSRPGVGGIVQRPYSQDTGFCVFWDYVLGLPKRNGSRVIGKVRLAFGLYVGSRLQGKMMSTKWAS--PSASTVMQEDTRNHETCCLLETRNIFAGIPVNVQTRLVVELQ--FKDEGGNYIKAKD-TLGWGSMHVFKPEKGNAQRLTVRAGLTKLNLFRGRVDLRVANINDAMSALSRSTPTAAFLRLVHSEDINGAAAFVVNPE 729
G+ PGV PYS D+GF VFWD+V LP+ + + L + LY G +++G + S P + + L R F P + +LVVE+Q GG K ++GW S+ +F+P L +RAG + L+R + N + + + P + F R+V + D+ AF V+P+
Sbjct: 545 GTLPGV------PYSADSGFVVFWDFVSALPRH-----VAQCNLVYALYDGPKMRGAVKSLPVCDCEPEPGGLAR---------ALFAIRRQFMHTPAHQDLQLVVEVQHVIAPAGGPGAPPKTASVGWTSVPLFEPS------LALRAGFWRAPLYRPPI-----NASTPVPERTPLDPMSLFFRVVLTADMERLRAFAVDPD 717 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3338.8945.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3338.8945.1 >prot_H-paniculata_contig3338.8945.1 ID=prot_H-paniculata_contig3338.8945.1|Name=mRNA_H-paniculata_contig3338.8945.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=486bp MLAKERQLMDVIGAAGSRVGPHHTLGGGGGAPGVYSVLQAAMGSRPGVGGback to top mRNA from alignment at H-paniculata_contig3338:1637..14859+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig3338.8945.1 ID=mRNA_H-paniculata_contig3338.8945.1|Name=mRNA_H-paniculata_contig3338.8945.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=13223bp|location=Sequence derived from alignment at H-paniculata_contig3338:1637..14859+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig3338:1637..14859+ >mRNA_H-paniculata_contig3338.8945.1 ID=mRNA_H-paniculata_contig3338.8945.1|Name=mRNA_H-paniculata_contig3338.8945.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2916bp|location=Sequence derived from alignment at H-paniculata_contig3338:1637..14859+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |