mRNA_H-paniculata_contig33364.8942.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig33364.8942.1
Unique NamemRNA_H-paniculata_contig33364.8942.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig33364.8942.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig33364contigH-paniculata_contig33364:1357..2038 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size661
Cds size342
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig33364.8942.1prot_H-paniculata_contig33364.8942.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig33364 1630..1992 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930030.9612286-UTR-H-paniculata_contig33364:1356..16291622930030.9612286-UTR-H-paniculata_contig33364:1356..1629Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig33364 1357..1629 +
1691481117.7225127-UTR-H-paniculata_contig33364:1356..16291691481117.7225127-UTR-H-paniculata_contig33364:1356..1629Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig33364 1357..1629 +
1622930031.0092802-UTR-H-paniculata_contig33364:1992..20381622930031.0092802-UTR-H-paniculata_contig33364:1992..2038Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig33364 1993..2038 +
1691481117.7536845-UTR-H-paniculata_contig33364:1992..20381691481117.7536845-UTR-H-paniculata_contig33364:1992..2038Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig33364 1993..2038 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930030.9735928-CDS-H-paniculata_contig33364:1629..16901622930030.9735928-CDS-H-paniculata_contig33364:1629..1690Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33364 1630..1690 +
1691481117.735907-CDS-H-paniculata_contig33364:1629..16901691481117.735907-CDS-H-paniculata_contig33364:1629..1690Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33364 1630..1690 +
1622930030.9904041-CDS-H-paniculata_contig33364:1711..19921622930030.9904041-CDS-H-paniculata_contig33364:1711..1992Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33364 1712..1992 +
1691481117.7458482-CDS-H-paniculata_contig33364:1711..19921691481117.7458482-CDS-H-paniculata_contig33364:1711..1992Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33364 1712..1992 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig33364.8942.1

>prot_H-paniculata_contig33364.8942.1 ID=prot_H-paniculata_contig33364.8942.1|Name=mRNA_H-paniculata_contig33364.8942.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=114bp
MARVARVGLGALASVAAIERVMTSFKARLTRCGWKRSCFCTGTRTSLPTT
CLCLPGIKRWVLFLGGCKTRSLIYNISAGHITRYWTTGTERMSMSWIFYR
SRSTKLVYSLYFC*
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mRNA from alignment at H-paniculata_contig33364:1357..2038+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig33364.8942.1 ID=mRNA_H-paniculata_contig33364.8942.1|Name=mRNA_H-paniculata_contig33364.8942.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=682bp|location=Sequence derived from alignment at H-paniculata_contig33364:1357..2038+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGAAGGAGATGGAAACGATGGCGGTGGAAGTACGGTTTCAGTACGTTTT
TCTTTAGGCGGGGAAAGAGACAAGGCGATGCTCAGTGCGTATACCGACCT
CGGACCGGTCCATCGCAGAGACCAAGATTACGGTCCCCGGAGAGAAAACA
CACGAGGAAATCGTAAGGGAGCAGCTGTCGGACTTCCTGCGGATCGAAAA
TTGCAGTTAAGATCGTGTGCCGGTCCGTTACACGCTAGTCTTTTGGAAAG
CGCACGCTGGTCGCTTCCCTTGGATGGCACGAGTGGCGCGTGTGGGACTG
GGGGCTCTGGCTTCGGTGGCTGCAATTGAACGGGATGTCAGCGCCGCCGG
CCGCATGATGACCTCTTTCAAAGCTCGACTGACAAGATGTGGGTGGAAAA
GATCCTGTTTTTGCACGGGAACAAGGACTTCATTGCCGACAACGTGCCTG
TGCTTACCGGGGATCAAGCGTTGGGTGCTATTCCTGGGCGGCTGCAAAAC
CCGGTCTCTGATTTACAACATCTCCGCGGGCCATATCACACGGTATTGGA
CGACGGGGACGGAGAGGATGAGCATGTCTTGGATATTTTATAGATCGCGG
AGCACGAAACTAGTCTATAGTTTGTATTTTTGTTGAGTCAGGTTACGGAG
TCTATTTCGACGGTAATGTCGGTGCAATTACG
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Coding sequence (CDS) from alignment at H-paniculata_contig33364:1357..2038+

>mRNA_H-paniculata_contig33364.8942.1 ID=mRNA_H-paniculata_contig33364.8942.1|Name=mRNA_H-paniculata_contig33364.8942.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at H-paniculata_contig33364:1357..2038+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCACGAGTGGCGCGTGTGGGACTGGGGGCTCTGGCTTCGGTGGCTGC
AATTGAACGGGATGGCACGAGTGGCGCGTGTGGGACTGGGGGCTCTGGCT
TCGGTGGCTGCAATTGAACGGGTGATGACCTCTTTCAAAGCTCGACTGAC
AAGATGTGGGTGGAAAAGATCCTGTTTTTGCACGGGAACAAGGACTTCAT
TGCCGACAACGTGCCTGTGCTTACCGGGGATCAAGCGTTGGGTGCTATTC
CTGGGCGGCTGCAAAACCCGGTCTCTGATTTACAACATCTCCGCGGGCCA
TATCACACGGTATTGGACGACGGGGACGGAGAGGATGAGCATGTCTTGGA
TATTTTATAGATCGCGGAGCACGAAACTAGTCTATAGTTTGTATTTTTGT
TGATGATGACCTCTTTCAAAGCTCGACTGACAAGATGTGGGTGGAAAAGA
TCCTGTTTTTGCACGGGAACAAGGACTTCATTGCCGACAACGTGCCTGTG
CTTACCGGGGATCAAGCGTTGGGTGCTATTCCTGGGCGGCTGCAAAACCC
GGTCTCTGATTTACAACATCTCCGCGGGCCATATCACACGGTATTGGACG
ACGGGGACGGAGAGGATGAGCATGTCTTGGATATTTTATAGATCGCGGAG
CACGAAACTAGTCTATAGTTTGTATTTTTGTTGA
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