mRNA_H-paniculata_contig33344.8940.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig33344.8940.1
Unique NamemRNA_H-paniculata_contig33344.8940.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig33344.8940.1 vs. uniprot
Match: D7FLS6_ECTSI (Polynucleotide kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLS6_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 2.590e-30
Identity = 67/108 (62.04%), Postives = 72/108 (66.67%), Query Frame = 1 
Query:    1 QDFSAGDLKLALNLGIPFQTPEQFFMRSTQSIHKDRSLAVLGFDPSTLLSDSPSSELENLSAPNGGVGVGGGGSGEVGEGLLEVVVLVGPPASGKSTLCKSRLSGHVR 324
            +DFSAGDLKLALN  IPFQTPEQFFMRST  +HK+RSLA+LGFDPSTLL        E+LS   G  G             LEVVVLVGPP  GKSTLCK RL  H R
Sbjct:  418 KDFSAGDLKLALNAKIPFQTPEQFFMRSTVPLHKNRSLAMLGFDPSTLLGKGSGGSAESLSRREGDGGX-----------XLEVVVLVGPPGGGKSTLCKDRLPDHAR 514
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BLAST of mRNA_H-paniculata_contig33344.8940.1 vs. uniprot
Match: A0A7S2Y1Q1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1Q1_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 5.540e-19
Identity = 50/108 (46.30%), Postives = 61/108 (56.48%), Query Frame = 1 
Query:    1 QDFSAGDLKLALNLGIPFQTPEQFFMRSTQSIHKDRSLAVLGFDPSTLLSDSPSSELENLSAPNGGVGVGGGGSGEVGEGLLEVVVLVGPPASGKSTLCKSRLSGHVR 324
            +DFSAGDLK ALNLGI F TPE+FF+ STQS+H  R  A++GF PSTL   +  +                           EV+VLVG PASGKST C+  L+ H R
Sbjct:   21 KDFSAGDLKFALNLGIRFYTPEEFFLGSTQSLHCSRQKALMGFQPSTLQPTTTGTVYFFQEQ--------------------EVLVLVGSPASGKSTFCQQVLTEHTR 108
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BLAST of mRNA_H-paniculata_contig33344.8940.1 vs. uniprot
Match: A0A1V9YPP6_9STRA (Bifunctional polynucleotide phosphatase/kinase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YPP6_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 5.340e-18
Identity = 50/108 (46.30%), Postives = 63/108 (58.33%), Query Frame = 1 
Query:    1 QDFSAGDLKLALNLGIPFQTPEQFFMRSTQSIHKDRSLAVLGFDPSTLLSDSPSSELENLSAPNGGVGVGGGGSGEVGEGLLEVVVLVGPPASGKSTLCKSRLSGHVR 324
            +DFSAGD K ALN+G+ FQTPEQ F+ S  S+H D SL  LGFDP +LL+D+ + E E  S P                   E+VVLVG PA+GKST C +    + R
Sbjct:  284 KDFSAGDYKFALNVGVSFQTPEQLFLGSKLSLHCDTSLRDLGFDPRSLLTDARAFEPEPASNP-------------------EMVVLVGSPAAGKSTFCATYFGTYAR 372
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BLAST of mRNA_H-paniculata_contig33344.8940.1 vs. uniprot
Match: A0A067C1U0_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067C1U0_SAPPC)

HSP 1 Score: 84.7 bits (208), Expect = 5.580e-17
Identity = 48/108 (44.44%), Postives = 62/108 (57.41%), Query Frame = 1 
Query:    1 QDFSAGDLKLALNLGIPFQTPEQFFMRSTQSIHKDRSLAVLGFDPSTLLSDSPSSELENLSAPNGGVGVGGGGSGEVGEGLLEVVVLVGPPASGKSTLCKSRLSGHVR 324
            +DFSAGD K ALNLG+PF TPEQ F+ S  S+H D +L  LGFDP +LL D   + ++    P+                  E+VVLVG PASGKST C++    + R
Sbjct:  232 KDFSAGDYKFALNLGVPFWTPEQLFLNSKLSLHCDPTLRDLGFDPRSLLQDV--NAIDATCRPSD---------------ATEMVVLVGSPASGKSTFCRTYFGDYAR 322
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BLAST of mRNA_H-paniculata_contig33344.8940.1 vs. uniprot
Match: A0A1V9ZVQ6_9STRA (Bifunctional polynucleotide phosphatase/kinase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZVQ6_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 1.090e-15
Identity = 49/108 (45.37%), Postives = 59/108 (54.63%), Query Frame = 1 
Query:    1 QDFSAGDLKLALNLGIPFQTPEQFFMRSTQSIHKDRSLAVLGFDPSTLLSDSPSSELENLSAPNGGVGVGGGGSGEVGEGLLEVVVLVGPPASGKSTLCKSRLSGHVR 324
            +DFSAGD K ALNLGI F+TPEQFF+ S QSIH D  +  L FDP  LL  +   E      P  G                E++VLVG PA+GKST C+   S + R
Sbjct:  302 KDFSAGDYKFALNLGIIFKTPEQFFLGSKQSIHCDPKIRELDFDPRKLLEVAKQVEAAWQCGPVKG---------------QEMIVLVGSPAAGKSTFCQKYFSDYKR 394
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BLAST of mRNA_H-paniculata_contig33344.8940.1 vs. uniprot
Match: T0QN25_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QN25_SAPDV)

HSP 1 Score: 80.9 bits (198), Expect = 1.480e-15
Identity = 45/108 (41.67%), Postives = 61/108 (56.48%), Query Frame = 1 
Query:    1 QDFSAGDLKLALNLGIPFQTPEQFFMRSTQSIHKDRSLAVLGFDPSTLLSDSPSSELENLSAPNGGVGVGGGGSGEVGEGLLEVVVLVGPPASGKSTLCKSRLSGHVR 324
            +DFSAGD K ALNLG+PF TPEQ F+ S  S+H D  L  LGFDP +L  D  +  ++    P+                  E++VLVG PA+GKST C++    ++R
Sbjct:  294 KDFSAGDYKFALNLGVPFWTPEQLFLNSKLSLHCDPKLRDLGFDPRSLFQDVQA--VDATCRPSD---------------ATEMIVLVGSPAAGKSTFCRTYFGEYMR 384
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BLAST of mRNA_H-paniculata_contig33344.8940.1 vs. uniprot
Match: W4GG15_9STRA (Polynucleotide kinase 3'-phosphatase, variant 3 n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GG15_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 6.810e-15
Identity = 47/108 (43.52%), Postives = 61/108 (56.48%), Query Frame = 1 
Query:    1 QDFSAGDLKLALNLGIPFQTPEQFFMRSTQSIHKDRSLAVLGFDPSTLLSDSPSSELENLSAPNGGVGVGGGGSGEVGEGLLEVVVLVGPPASGKSTLCKSRLSGHVR 324
            +DFS  D K ALN+G+PF TPE+ F++ST S+H   S   LGFDP TLL   P + L  +  P+                  E+VVLVG PASGKS+ CK+   G+ R
Sbjct:   77 KDFSCADYKFALNVGVPFHTPERLFLQSTLSLHCKESSFDLGFDPRTLL--HPVTTL--IVTPHD---------------AQEMVVLVGSPASGKSSFCKAYFPGYAR 165
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BLAST of mRNA_H-paniculata_contig33344.8940.1 vs. uniprot
Match: W4GGB4_9STRA (Polynucleotide kinase 3'-phosphatase, variant 2 n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GGB4_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 7.910e-15
Identity = 47/108 (43.52%), Postives = 61/108 (56.48%), Query Frame = 1 
Query:    1 QDFSAGDLKLALNLGIPFQTPEQFFMRSTQSIHKDRSLAVLGFDPSTLLSDSPSSELENLSAPNGGVGVGGGGSGEVGEGLLEVVVLVGPPASGKSTLCKSRLSGHVR 324
            +DFS  D K ALN+G+PF TPE+ F++ST S+H   S   LGFDP TLL   P + L  +  P+                  E+VVLVG PASGKS+ CK+   G+ R
Sbjct:  207 KDFSCADYKFALNVGVPFHTPERLFLQSTLSLHCKESSFDLGFDPRTLL--HPVTTL--IVTPHD---------------AQEMVVLVGSPASGKSSFCKAYFPGYAR 295
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BLAST of mRNA_H-paniculata_contig33344.8940.1 vs. uniprot
Match: A0A485L0I8_9STRA (Aste57867_14265 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L0I8_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.180e-14
Identity = 44/108 (40.74%), Postives = 61/108 (56.48%), Query Frame = 1 
Query:    1 QDFSAGDLKLALNLGIPFQTPEQFFMRSTQSIHKDRSLAVLGFDPSTLLSDSPSSELENLSAPNGGVGVGGGGSGEVGEGLLEVVVLVGPPASGKSTLCKSRLSGHVR 324
            +DFS GD K ALNLGI F TPE+FF+ S QS+H +++   L FDP +LLS +   +     AP+                  E++VLVG P +GKST C++  S + R
Sbjct:  199 KDFSCGDYKFALNLGITFYTPEKFFLGSKQSLHSNKTSFELDFDPRSLLSHAVPLDAAWKVAPSS---------------TQEMIVLVGSPGAGKSTFCQAYFSSYGR 291
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BLAST of mRNA_H-paniculata_contig33344.8940.1 vs. uniprot
Match: W4GFG6_9STRA (Polynucleotide kinase 3'-phosphatase n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GFG6_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.230e-14
Identity = 47/108 (43.52%), Postives = 61/108 (56.48%), Query Frame = 1 
Query:    1 QDFSAGDLKLALNLGIPFQTPEQFFMRSTQSIHKDRSLAVLGFDPSTLLSDSPSSELENLSAPNGGVGVGGGGSGEVGEGLLEVVVLVGPPASGKSTLCKSRLSGHVR 324
            +DFS  D K ALN+G+PF TPE+ F++ST S+H   S   LGFDP TLL   P + L  +  P+                  E+VVLVG PASGKS+ CK+   G+ R
Sbjct:  207 KDFSCADYKFALNVGVPFHTPERLFLQSTLSLHCKESSFDLGFDPRTLL--HPVTTL--IVTPHD---------------AQEMVVLVGSPASGKSSFCKAYFPGYAR 295
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig33344.8940.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLS6_ECTSI2.590e-3062.04Polynucleotide kinase n=2 Tax=Ectocarpus TaxID=287... [more]
A0A7S2Y1Q1_9STRA5.540e-1946.30Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A1V9YPP6_9STRA5.340e-1846.30Bifunctional polynucleotide phosphatase/kinase n=1... [more]
A0A067C1U0_SAPPC5.580e-1744.44Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
A0A1V9ZVQ6_9STRA1.090e-1545.37Bifunctional polynucleotide phosphatase/kinase n=1... [more]
T0QN25_SAPDV1.480e-1541.67Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
W4GG15_9STRA6.810e-1543.52Polynucleotide kinase 3'-phosphatase, variant 3 n=... [more]
W4GGB4_9STRA7.910e-1543.52Polynucleotide kinase 3'-phosphatase, variant 2 n=... [more]
A0A485L0I8_9STRA1.180e-1440.74Aste57867_14265 protein n=1 Tax=Aphanomyces stella... [more]
W4GFG6_9STRA1.230e-1443.52Polynucleotide kinase 3'-phosphatase n=2 Tax=Aphan... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig33344contigH-paniculata_contig33344:15..1823 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score122.9
Seed ortholog evalue9.5e-26
Seed eggNOG ortholog2880.D7FLS6
KEGG koko:K08073
Hectar predicted targeting categoryother localisation
EggNOG free text desc.DNA-3'-diphospho-5'-guanosine diphosphatase
EggNOG OGsCOG0241@1,KOG2134@2759
EC2.7.1.78,3.1.3.32
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009,ko03400
Exons2
Model size327
Cds size327
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930030.7798748-CDS-H-paniculata_contig33344:14..2341622930030.7798748-CDS-H-paniculata_contig33344:14..234Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33344 15..234 -
1691481117.6165555-CDS-H-paniculata_contig33344:14..2341691481117.6165555-CDS-H-paniculata_contig33344:14..234Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33344 15..234 -
1622930030.794826-CDS-H-paniculata_contig33344:1716..18231622930030.794826-CDS-H-paniculata_contig33344:1716..1823Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33344 1717..1823 -
1691481117.6301033-CDS-H-paniculata_contig33344:1716..18231691481117.6301033-CDS-H-paniculata_contig33344:1716..1823Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33344 1717..1823 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig33344.8940.1prot_H-paniculata_contig33344.8940.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig33344 15..1823 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig33344.8940.1

>prot_H-paniculata_contig33344.8940.1 ID=prot_H-paniculata_contig33344.8940.1|Name=mRNA_H-paniculata_contig33344.8940.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=109bp
QDFSAGDLKLALNLGIPFQTPEQFFMRSTQSIHKDRSLAVLGFDPSTLLS
DSPSSELENLSAPNGGVGVGGGGSGEVGEGLLEVVVLVGPPASGKSTLCK
SRLSGHVR*
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mRNA from alignment at H-paniculata_contig33344:15..1823-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig33344.8940.1 ID=mRNA_H-paniculata_contig33344.8940.1|Name=mRNA_H-paniculata_contig33344.8940.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1809bp|location=Sequence derived from alignment at H-paniculata_contig33344:15..1823- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGACTTTTCTGCGGGAGATTTAAAGCTCGCCCTGAATCTAGGGATCCC
CTTTCAGACCCCCGAACAGTTCTTCATGCGCTCTACGCAAAGCATTCACA
AAGACAGGTGAGGTGCACACCGTTGGCGAGCAGGAAATCGAAATCTACTG
AAAGCAGCGATGGGGCAATATCCCAATCAAGTGTGGTGGTATATAGGGAA
TTTGTCATATGCCGAAGCTCTTTTTGTTGCACGCCAAAAGCACAACTTGT
ACGTCGAACAAACCTCGGAGGTCAACTTTCAATAATCTCGCGGGGTCAAA
ATAGGCCAACAACCTGGCGACCCCGGGGATTATTCGTCAGCATTATCCCC
CTGTATATTTTCCATTGGCTTCGTTATATACTGCAACGCCTTGACGAAGT
GGTAACGGGCTATTCCCGGCTGGGGATAACCTCGACTTGGGGGGGAAATT
TTATGTGTCTCTCCACTCGTGATCCTACGGCATTGCTAATGAAGTTTAAC
ATGTGAGAGGTTCATATCGAATGGCCTTCCACGGACCTACTACGCTCGAA
CGGGTAGGGTAGCTCGTGAACTAAGCATGACTGGAAGTCTAGTCGGAGGT
CTTTTAGTGGGTGCAACCCCCACACTGCCTACTTGGTTCGGCCGAAACGG
GGTGGCGCCTACCCCGCAGAGGAATAAATAACTCTGTTCTGTTAAACTGA
AATGTCGAAATACTTTGATAAAATACTCAAGTATGGAAGCATCGGAGGAA
GGTTTTTGCCTCAGCCTTCCTTCCGGGGGTTAAAAATAAAATAAAATCGA
ATGACCTTTTGAGCACCTACTACCCCCGACTTTGAGCTTTTGTTCCCATG
GCCTGCTCAATTTATGGAATCGATGTCTTTTTGTGTTCCGTGTTTAGTTG
TTTTCACTCACTTTGTTCGGCTGTACCTCACCACCTATAGTCGTACTCCC
TGGAGATTTTCGCACGTTATGGTGCTTGCTTCCTGTCTTTTTTTTATGCA
GTCATTTCGCCACCTATGGTCACACACTCTAGTCAAAGATTAGTTATCGC
TCATGTTCTGATACTGTCGTCATGCAGCAATGTGTACCGGTATTATATTC
GTCATCTGAGAGCCAACGTTCAGACCTTGAATACATACGCCACTGAATAT
ATATATCTATATATGTTTAATAACCCACTTTTTTTTCTTTTTTTTAACAT
GCCTGTGTTATGAGATTTTGATTGCGGGACGTGAGTCATTGTCTAATGTG
ACGCTTCCATCCCCAATCCCCAGGTTTATGTAAGGTAGCCTCAGTTGAGC
TGGGAGCAGAAAGCACGGACCGTGTGACCATCCCACCCAACTGACAGACT
TGTATGAACCCAGGGCTTTTCCTGACGTACAGCAATATACAGCTAATACA
AGAGGCCAGACCATTGCCAAGGACTACTTCTACCACCCCAGCCGTACCGC
TCTGAGAGTATTGTGCAGCATAGTCAGTAACAGGAAACAATAACCTATGT
GTGTGAGATACTCCGCAGTACGAACAGCAGTTATCATCACGCCTGTCCTG
AAATGTTTCGTCCTTTTTTCTTTTTTTATCACTTGTCAGGTCTTTGGCCG
TGCTAGGCTTCGACCCTTCCACCCTACTGTCCGACAGCCCCTCTTCAGAA
CTGGAAAACCTATCAGCTCCCAACGGCGGCGTCGGGGTTGGGGGCGGGGG
TAGCGGCGAAGTCGGGGAGGGGTTGCTGGAGGTGGTGGTGCTAGTTGGCC
CGCCGGCATCGGGCAAAAGCACCCTCTGCAAGAGTAGACTCTCCGGCCAC
GTGAGGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig33344:15..1823-

>mRNA_H-paniculata_contig33344.8940.1 ID=mRNA_H-paniculata_contig33344.8940.1|Name=mRNA_H-paniculata_contig33344.8940.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at H-paniculata_contig33344:15..1823- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGACTTTTCTGCGGGAGATTTAAAGCTCGCCCTGAATCTAGGGATCCC
CTTTCAGACCCCCGAACAGTTCTTCATGCGCTCTACGCAAAGCATTCACA
AAGACAGCAGGACTTTTCTGCGGGAGATTTAAAGCTCGCCCTGAATCTAG
GGATCCCCTTTCAGACCCCCGAACAGTTCTTCATGCGCTCTACGCAAAGC
ATTCACAAAGACAGGTCTTTGGCCGTGCTAGGCTTCGACCCTTCCACCCT
ACTGTCCGACAGCCCCTCTTCAGAACTGGAAAACCTATCAGCTCCCAACG
GCGGCGTCGGGGTTGGGGGCGGGGGTAGCGGCGAAGTCGGGGAGGGGTTG
CTGGAGGTGGTGGTGCTAGTTGGCCCGCCGGCATCGGGCAAAAGCACCCT
CTGCAAGAGTAGACTCTCCGGCCACGTGAGGTAGGTCTTTGGCCGTGCTA
GGCTTCGACCCTTCCACCCTACTGTCCGACAGCCCCTCTTCAGAACTGGA
AAACCTATCAGCTCCCAACGGCGGCGTCGGGGTTGGGGGCGGGGGTAGCG
GCGAAGTCGGGGAGGGGTTGCTGGAGGTGGTGGTGCTAGTTGGCCCGCCG
GCATCGGGCAAAAGCACCCTCTGCAAGAGTAGACTCTCCGGCCACGTGAG
GTAG
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