mRNA_H-paniculata_contig3333.8937.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-paniculata_contig3333.8937.1
Unique Name	mRNA_H-paniculata_contig3333.8937.1
Type	mRNA
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)

Homology

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BLAST of mRNA_H-paniculata_contig3333.8937.1 vs. uniprot
Match: A0A6H5KAN7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN7_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 1.470e-29
Identity = 65/98 (66.33%), Postives = 74/98 (75.51%), Query Frame = 1

Query:    1 MTRLAALVGVFSHSAVNNDELKKVQKVVEELDNALGLIRRNETRSTSQRNMMDRLLKLQNAIVGYFRAHPNNTRKLSTNVWRITEEVCSLLDPVAEVT 294
            M RLAA+VGVFSHSAVNNDELK +Q++ EE      LIRRN+TR  SQ  MM RLLKL+ AIV YFR + NN RKLS+  W +T EVCSLLD VAEVT
Sbjct:   78 MKRLAAVVGVFSHSAVNNDELKDIQRLQEEFQIIYELIRRNDTRWASQHAMMVRLLKLKKAIVEYFRDNENNNRKLSSREWTVTNEVCSLLDVVAEVT 175

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BLAST of mRNA_H-paniculata_contig3333.8937.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 3.210e-29
Identity = 65/98 (66.33%), Postives = 74/98 (75.51%), Query Frame = 1

Query:    1 MTRLAALVGVFSHSAVNNDELKKVQKVVEELDNALGLIRRNETRSTSQRNMMDRLLKLQNAIVGYFRAHPNNTRKLSTNVWRITEEVCSLLDPVAEVT 294
            M RLAA+VGVFSHSAVNNDELK +Q++ EE      LIRRN+TR  SQ  MM RLLKL+ AIV YFR + NN RKLS+  W +T EVCSLLD VAEVT
Sbjct:  406 MKRLAAVVGVFSHSAVNNDELKDIQRLQEEFQIIYELIRRNDTRWASQHAMMVRLLKLKKAIVEYFRDNENNNRKLSSREWTVTNEVCSLLDVVAEVT 503

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BLAST of mRNA_H-paniculata_contig3333.8937.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 2.490e-27
Identity = 61/98 (62.24%), Postives = 74/98 (75.51%), Query Frame = 1

Query:    1 MTRLAALVGVFSHSAVNNDELKKVQKVVEELDNALGLIRRNETRSTSQRNMMDRLLKLQNAIVGYFRAHPNNTRKLSTNVWRITEEVCSLLDPVAEVT 294
            M +LAALVGVFSHSAVNND+LK++Q++ E+L     LIRRN+TR TSQ  MMDRLL L+  I  YFR  P+N+RKL+   W IT EVCSLL  V+EVT
Sbjct:  414 MKKLAALVGVFSHSAVNNDKLKELQRLEEDLHAVYQLIRRNDTRWTSQFKMMDRLLALKKPITEYFREQPHNSRKLTQPEWTITNEVCSLLSDVSEVT 511

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BLAST of mRNA_H-paniculata_contig3333.8937.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 2.200e-26
Identity = 58/98 (59.18%), Postives = 72/98 (73.47%), Query Frame = 1

Query:    1 MTRLAALVGVFSHSAVNNDELKKVQKVVEELDNALGLIRRNETRSTSQRNMMDRLLKLQNAIVGYFRAHPNNTRKLSTNVWRITEEVCSLLDPVAEVT 294
            M +LAA+VGVFSHSAVNNDELK++Q++ E       L+RRN+TR TSQ  MMDR+L L+  I  YF+ +P N RKL+ N W IT EVCSLL  V+EVT
Sbjct:  416 MKKLAAMVGVFSHSAVNNDELKELQRLEEGFSRIYELLRRNDTRWTSQFKMMDRVLALKKPISEYFKKYPQNERKLTPNEWTITNEVCSLLSDVSEVT 513

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BLAST of mRNA_H-paniculata_contig3333.8937.1 vs. uniprot
Match: A0A6H5JTB8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB8_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 1.840e-25
Identity = 57/98 (58.16%), Postives = 71/98 (72.45%), Query Frame = 1

Query:    1 MTRLAALVGVFSHSAVNNDELKKVQKVVEELDNALGLIRRNETRSTSQRNMMDRLLKLQNAIVGYFRAHPNNTRKLSTNVWRITEEVCSLLDPVAEVT 294
            M +LAA+VGVFSHSAVNNDELK++Q++ E       L+R N+TR TSQ  MMDR+L L+  I  YF+ +P N RKL+ N W IT EVCSLL  V+EVT
Sbjct:  221 MKKLAAMVGVFSHSAVNNDELKELQRLEEGFSRIYELLRPNDTRWTSQFKMMDRVLALKKPISEYFKKYPQNERKLTPNEWTITNEVCSLLSDVSEVT 318

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BLAST of mRNA_H-paniculata_contig3333.8937.1 vs. uniprot
Match: A0A6H5KZZ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZZ1_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 4.680e-24
Identity = 54/98 (55.10%), Postives = 69/98 (70.41%), Query Frame = 1

Query:    1 MTRLAALVGVFSHSAVNNDELKKVQKVVEELDNALGLIRRNETRSTSQRNMMDRLLKLQNAIVGYFRAHPNNTRKLSTNVWRITEEVCSLLDPVAEVT 294
            M +LAA+VGVF+HSAVNNDELK++Q++ E       L+RRN+TR TSQ  MMDR L L+  I  YF+ +  N RKL+ N W +  EVCSLL  V+EVT
Sbjct:    5 MKKLAAMVGVFNHSAVNNDELKELQRLEEGFSRIYELLRRNDTRWTSQFKMMDRCLALKKPISEYFKKYLQNERKLTPNEWTMINEVCSLLSNVSEVT 102

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BLAST of mRNA_H-paniculata_contig3333.8937.1 vs. uniprot
Match: A0A6H5KAS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS2_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 3.780e-23
Identity = 55/99 (55.56%), Postives = 70/99 (70.71%), Query Frame = 1

Query:    1 MTRLAALVGVFSHSAVNNDELKKVQKVVEELDNALGLIRRNETRS-TSQRNMMDRLLKLQNAIVGYFRAHPNNTRKLSTNVWRITEEVCSLLDPVAEVT 294
            M +LAA+VGVFSHSAVNNDELK++Q++ E       L+RRN+TR  TSQ  MMDR L L+  I  +F+ +P N RKL+ N W I  EVCSLL  V+E+T
Sbjct:   65 MKKLAAMVGVFSHSAVNNDELKELQRLEEGFSRIYELLRRNDTRWWTSQLKMMDRALALKKPISEFFKKYPQNDRKLTPNEWTIINEVCSLLADVSEIT 163

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BLAST of mRNA_H-paniculata_contig3333.8937.1 vs. uniprot
Match: A0A6H5JZU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZU3_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 1.010e-20
Identity = 57/105 (54.29%), Postives = 72/105 (68.57%), Query Frame = 1

Query:    1 MTRLAALVGVFSHSAVNNDELKKVQKVVEELDNALGLIRRNETRSTSQRNMMDRLLKLQNAIVGYFR--AHPNNT-----RKLSTNVWRITEEVCSLLDPVAEVT 294
            M +LAALVGVFSHSAVNND LK++Q++  +L      IRRN+TR TSQ+ MM RLL L+  I  YFR  A  N+      RKL+ + W +T EVCSLL+ V+EVT
Sbjct:  223 MKKLAALVGVFSHSAVNNDMLKELQRLEADLHRIYETIRRNDTRWTSQQKMMGRLLILKKPISEYFRRLAQQNSQNKQLKRKLTAHEWTVTNEVCSLLETVSEVT 327

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BLAST of mRNA_H-paniculata_contig3333.8937.1 vs. uniprot
Match: A0A6H5JQI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQI6_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 1.010e-20
Identity = 57/105 (54.29%), Postives = 72/105 (68.57%), Query Frame = 1

Query:    1 MTRLAALVGVFSHSAVNNDELKKVQKVVEELDNALGLIRRNETRSTSQRNMMDRLLKLQNAIVGYFR--AHPNNT-----RKLSTNVWRITEEVCSLLDPVAEVT 294
            M +LAALVGVFSHSAVNND LK++Q++  +L      IRRN+TR TSQ+ MM RLL L+  I  YFR  A  N+      RKL+ + W +T EVCSLL+ V+EVT
Sbjct:  223 MKKLAALVGVFSHSAVNNDMLKELQRLEADLHRIYETIRRNDTRWTSQQKMMGRLLILKKPISEYFRRLAQQNSQNKQLKRKLTAHEWTVTNEVCSLLETVSEVT 327

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BLAST of mRNA_H-paniculata_contig3333.8937.1 vs. uniprot
Match: A0A6H5JR38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR38_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 2.190e-19
Identity = 51/96 (53.12%), Postives = 64/96 (66.67%), Query Frame = 1

Query:    7 RLAALVGVFSHSAVNNDELKKVQKVVEELDNALGLIRRNETRSTSQRNMMDRLLKLQNAIVGYFRAHPNNTRKLSTNVWRITEEVCSLLDPVAEVT 294
            +LAA+VGVFSHSAVNNDELK++Q++ E       L+RRN+T   SQ  M DR L L+  I  YF+  P N R+L+ N W I  EVCSLL  V+E T
Sbjct:   94 KLAAMVGVFSHSAVNNDELKELQRLEEGFSRIYELLRRNDT---SQFKMTDRSLALKKPISEYFKKSPQNERQLTPNEWTIINEVCSLLSDVSEDT 186

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig3333.8937.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig3333.8937.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12


Match Name	E-value	Identity	Description
A0A6H5KAN7_9PHAE	1.470e-29	66.33	Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec...	[more]
A0A6H5KJ52_9PHAE	3.210e-29	66.33	Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec...	[more]
A0A6H5JRT6_9PHAE	2.490e-27	62.24	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JGG8_9PHAE	2.200e-26	59.18	Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec...	[more]
A0A6H5JTB8_9PHAE	1.840e-25	58.16	Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec...	[more]
A0A6H5KZZ1_9PHAE	4.680e-24	55.10	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KAS2_9PHAE	3.780e-23	55.56	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JZU3_9PHAE	1.010e-20	54.29	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JQI6_9PHAE	1.010e-20	54.29	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JR38_9PHAE	2.190e-19	53.13	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig3333	contig	H-paniculata_contig3333:14347..14841 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	2
Model size	294
Cds size	294
Stop	0
Start	1

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930029.967485-CDS-H-paniculata_contig3333:14346..14477	1622930029.967485-CDS-H-paniculata_contig3333:14346..14477	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig3333 14347..14477 +
1691481117.229767-CDS-H-paniculata_contig3333:14346..14477	1691481117.229767-CDS-H-paniculata_contig3333:14346..14477	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig3333 14347..14477 +
1622930030.0153792-CDS-H-paniculata_contig3333:14678..14841	1622930030.0153792-CDS-H-paniculata_contig3333:14678..14841	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig3333 14679..14841 +
1691481117.2386267-CDS-H-paniculata_contig3333:14678..14841	1691481117.2386267-CDS-H-paniculata_contig3333:14678..14841	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig3333 14679..14841 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig3333.8937.1	prot_H-paniculata_contig3333.8937.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig3333 14347..14841 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig3333:14347..14841+
coding sequence from alignment at H-paniculata_contig3333:14347..14841+

protein sequence of mRNA_H-paniculata_contig3333.8937.1

>prot_H-paniculata_contig3333.8937.1 ID=prot_H-paniculata_contig3333.8937.1|Name=mRNA_H-paniculata_contig3333.8937.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=98bp
MTRLAALVGVFSHSAVNNDELKKVQKVVEELDNALGLIRRNETRSTSQRN
MMDRLLKLQNAIVGYFRAHPNNTRKLSTNVWRITEEVCSLLDPVAEVT

mRNA from alignment at H-paniculata_contig3333:14347..14841+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig3333.8937.1 ID=mRNA_H-paniculata_contig3333.8937.1|Name=mRNA_H-paniculata_contig3333.8937.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=495bp|location=Sequence derived from alignment at H-paniculata_contig3333:14347..14841+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACAAGGCTCGCGGCGTTGGTTGGCGTCTTCAGTCACTCTGCTGTCAA
CAATGATGAGCTGAAGAAGGTCCAGAAGGTGGTGGAAGAACTCGATAATG
CCCTCGGGTTGATCAGGCGCAATGAGACCAGGTGATGTAAAATATTTATG
GGAAAGTAGCGGCTCTTGTGTACATGATGTGCTCGATTGATTCTGCCCAC
ACTTTACTGCAGTGGTATGAAGTATTGCGACTACAGTAGTACGTTTGAGG
TATGGATGCTAGTTTTACCCGTTTAGTTTTTCGTTGTTCTTCGCCTCAGC
AATGTATTGTGTTTCCCTTTCGACTTGCGCAGGTCGACGTCCCAGAGAAA
TATGATGGATCGGCTCCTGAAGTTGCAGAACGCCATCGTGGGGTACTTCA
GAGCCCACCCGAACAACACCCGGAAGCTGAGCACTAACGTGTGGCGGATC
ACCGAGGAGGTATGCAGCTTGCTTGATCCTGTGGCCGAAGTGACG

Coding sequence (CDS) from alignment at H-paniculata_contig3333:14347..14841+

>mRNA_H-paniculata_contig3333.8937.1 ID=mRNA_H-paniculata_contig3333.8937.1|Name=mRNA_H-paniculata_contig3333.8937.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=588bp|location=Sequence derived from alignment at H-paniculata_contig3333:14347..14841+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACAAGGCTCGCGGCGTTGGTTGGCGTCTTCAGTCACTCTGCTGTCAA
CAATGATGAGCTGAAGAAGGTCCAGAAGGTGGTGGAAGAACTCGATAATG
CCCTCGGGTTGATCAGGCGCAATGAGACCAGATGACAAGGCTCGCGGCGT
TGGTTGGCGTCTTCAGTCACTCTGCTGTCAACAATGATGAGCTGAAGAAG
GTCCAGAAGGTGGTGGAAGAACTCGATAATGCCCTCGGGTTGATCAGGCG
CAATGAGACCAGGTCGACGTCCCAGAGAAATATGATGGATCGGCTCCTGA
AGTTGCAGAACGCCATCGTGGGGTACTTCAGAGCCCACCCGAACAACACC
CGGAAGCTGAGCACTAACGTGTGGCGGATCACCGAGGAGGTATGCAGCTT
GCTTGATCCTGTGGCCGAAGTGACGGTCGACGTCCCAGAGAAATATGATG
GATCGGCTCCTGAAGTTGCAGAACGCCATCGTGGGGTACTTCAGAGCCCA
CCCGAACAACACCCGGAAGCTGAGCACTAACGTGTGGCGGATCACCGAGG
AGGTATGCAGCTTGCTTGATCCTGTGGCCGAAGTGACG