mRNA_H-paniculata_contig33326.8935.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig33326.8935.1
Unique NamemRNA_H-paniculata_contig33326.8935.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig33326.8935.1 vs. uniprot
Match: A0A453SJJ3_AEGTS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453SJJ3_AEGTS)

HSP 1 Score: 68.6 bits (166), Expect = 3.100e-12
Identity = 32/54 (59.26%), Postives = 40/54 (74.07%), Query Frame = 1
Query:    1 HCRTKHIGVRWHGIREWIREGVFVLKYVQTGDQLADILTKGLSRVKFQRLRNSL 162
            H RTKHI  R+H IRE +++G  V+ Y+ TG+QLADI+TK L RVKFQ LR  L
Sbjct:  270 HDRTKHIETRFHFIRECVQDGRIVVDYIHTGEQLADIMTKALPRVKFQELREKL 323          
BLAST of mRNA_H-paniculata_contig33326.8935.1 vs. uniprot
Match: UPI001E1CA6F9 (LOW QUALITY PROTEIN: uncharacterized protein LOC109774810 n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=UPI001E1CA6F9)

HSP 1 Score: 67.0 bits (162), Expect = 1.400e-11
Identity = 31/54 (57.41%), Postives = 39/54 (72.22%), Query Frame = 1
Query:    1 HCRTKHIGVRWHGIREWIREGVFVLKYVQTGDQLADILTKGLSRVKFQRLRNSL 162
            H RTKHI  R+H IRE +++G   + Y+ TG+QLADI+TK L RVKFQ LR  L
Sbjct: 1371 HDRTKHIETRFHFIRECVQDGRIAVDYIHTGEQLADIMTKALPRVKFQELREKL 1424          
BLAST of mRNA_H-paniculata_contig33326.8935.1 vs. uniprot
Match: A0A453LP72_AEGTS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453LP72_AEGTS)

HSP 1 Score: 66.2 bits (160), Expect = 2.600e-11
Identity = 32/54 (59.26%), Postives = 41/54 (75.93%), Query Frame = 1
Query:    1 HCRTKHIGVRWHGIREWIREGVFVLKYVQTGDQLADILTKGLSRVKFQRLRNSL 162
            H R+KHI VR+H IRE + EG   +++V+TGDQLADILTK L+RVKF  LR  +
Sbjct:  482 HDRSKHIDVRYHFIRECVEEGRVTVEHVRTGDQLADILTKPLARVKFLELRERI 535          
BLAST of mRNA_H-paniculata_contig33326.8935.1 vs. uniprot
Match: UPI001E1BA65C (secreted RxLR effector protein 161-like n=1 Tax=Daphnia magna TaxID=35525 RepID=UPI001E1BA65C)

HSP 1 Score: 64.7 bits (156), Expect = 2.750e-11
Identity = 33/54 (61.11%), Postives = 38/54 (70.37%), Query Frame = 1
Query:    1 HCRTKHIGVRWHGIREWIREGVFVLKYVQTGDQLADILTKGLSRVKFQRLRNSL 162
            H RTKHI VR+H IRE   +GV   KYV T +QLADILTK L+  +FQRLR  L
Sbjct:  147 HQRTKHIDVRYHFIRELQEQGVIDAKYVNTNEQLADILTKPLAAPRFQRLRQEL 200          
BLAST of mRNA_H-paniculata_contig33326.8935.1 vs. uniprot
Match: A0A2K3K827_TRIPR (Gag-pol polyprotein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3K827_TRIPR)

HSP 1 Score: 61.2 bits (147), Expect = 5.890e-11
Identity = 28/54 (51.85%), Postives = 38/54 (70.37%), Query Frame = 1
Query:    1 HCRTKHIGVRWHGIREWIREGVFVLKYVQTGDQLADILTKGLSRVKFQRLRNSL 162
            H RTKHI +R H IR+ + EGV  L+++ T +QLADI TK L  V+F++LR  L
Sbjct:   28 HSRTKHIDIRHHFIRDLVEEGVVKLEHIATEEQLADIFTKALDAVQFEKLRGKL 81          
BLAST of mRNA_H-paniculata_contig33326.8935.1 vs. uniprot
Match: A0A7H4LHQ9_WHEAT (Genome assembly, chromosome: II n=1 Tax=Triticum aestivum TaxID=4565 RepID=A0A7H4LHQ9_WHEAT)

HSP 1 Score: 64.7 bits (156), Expect = 8.020e-11
Identity = 30/54 (55.56%), Postives = 38/54 (70.37%), Query Frame = 1
Query:    1 HCRTKHIGVRWHGIREWIREGVFVLKYVQTGDQLADILTKGLSRVKFQRLRNSL 162
            H R+KHI +R+H IRE + EG   + YV T DQLADILTK L R+KFQ +R  +
Sbjct:  285 HNRSKHIDIRYHYIRECVEEGKVEVDYVSTKDQLADILTKSLGRLKFQEMREKI 338          
BLAST of mRNA_H-paniculata_contig33326.8935.1 vs. uniprot
Match: A0A409WC63_9AGAR (Uncharacterized protein n=2 Tax=Panaeolus cyanescens TaxID=181874 RepID=A0A409WC63_9AGAR)

HSP 1 Score: 63.5 bits (153), Expect = 2.330e-10
Identity = 30/54 (55.56%), Postives = 38/54 (70.37%), Query Frame = 1
Query:    1 HCRTKHIGVRWHGIREWIREGVFVLKYVQTGDQLADILTKGLSRVKFQRLRNSL 162
            H RTKHI V++H  R+ IR G+  L+YVQT DQ+ADI TK L RVK ++ R  L
Sbjct: 1214 HMRTKHIDVQFHYTRQVIRRGIVKLEYVQTEDQVADIFTKALGRVKLEKFRGML 1267          
BLAST of mRNA_H-paniculata_contig33326.8935.1 vs. uniprot
Match: A0A6V7M3Q4_9HYME (Uncharacterized protein (Fragment) n=1 Tax=Bracon brevicornis TaxID=1563983 RepID=A0A6V7M3Q4_9HYME)

HSP 1 Score: 60.5 bits (145), Expect = 4.360e-10
Identity = 27/54 (50.00%), Postives = 37/54 (68.52%), Query Frame = 1
Query:    1 HCRTKHIGVRWHGIREWIREGVFVLKYVQTGDQLADILTKGLSRVKFQRLRNSL 162
            H +TKHI +++H IR+ I +G+ +LKYV TG QL D LTK L  +KF  LR  +
Sbjct:   92 HKKTKHIDIKYHIIRKQIEKGLIILKYVPTGKQLTDALTKSLPAIKFVELRGQM 145          
BLAST of mRNA_H-paniculata_contig33326.8935.1 vs. uniprot
Match: A0A061ED65_THECC (Uncharacterized protein n=1 Tax=Theobroma cacao TaxID=3641 RepID=A0A061ED65_THECC)

HSP 1 Score: 60.1 bits (144), Expect = 4.470e-10
Identity = 29/54 (53.70%), Postives = 38/54 (70.37%), Query Frame = 1
Query:    1 HCRTKHIGVRWHGIREWIREGVFVLKYVQTGDQLADILTKGLSRVKFQRLRNSL 162
            H RTKHI V++H +R+ ++     LKY  T DQLADI TKGLSR +F+ LR+ L
Sbjct:   65 HGRTKHIQVKFHALRDAMKNNEVDLKYCSTEDQLADIFTKGLSRERFEFLRSGL 118          
BLAST of mRNA_H-paniculata_contig33326.8935.1 vs. uniprot
Match: A0A5E8C5Q4_9ASCO (Uncharacterized protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8C5Q4_9ASCO)

HSP 1 Score: 62.4 bits (150), Expect = 5.980e-10
Identity = 30/55 (54.55%), Postives = 39/55 (70.91%), Query Frame = 1
Query:    1 HCRTKHIGVRWHGIREWIREGVFVLKYVQTGDQLADILTKGLSRVKFQRLRNSLM 165
            H RTKHI VR+H +R +IR GV  L+Y+ T   LAD+ TK L RVKF+ LR+ L+
Sbjct: 1706 HRRTKHIDVRYHVVRHYIRSGVIHLEYLDTQVMLADMFTKNLGRVKFETLRDYLV 1760          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig33326.8935.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A453SJJ3_AEGTS3.100e-1259.26Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI001E1CA6F91.400e-1157.41LOW QUALITY PROTEIN: uncharacterized protein LOC10... [more]
A0A453LP72_AEGTS2.600e-1159.26Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI001E1BA65C2.750e-1161.11secreted RxLR effector protein 161-like n=1 Tax=Da... [more]
A0A2K3K827_TRIPR5.890e-1151.85Gag-pol polyprotein (Fragment) n=1 Tax=Trifolium p... [more]
A0A7H4LHQ9_WHEAT8.020e-1155.56Genome assembly, chromosome: II n=1 Tax=Triticum a... [more]
A0A409WC63_9AGAR2.330e-1055.56Uncharacterized protein n=2 Tax=Panaeolus cyanesce... [more]
A0A6V7M3Q4_9HYME4.360e-1050.00Uncharacterized protein (Fragment) n=1 Tax=Bracon ... [more]
A0A061ED65_THECC4.470e-1053.70Uncharacterized protein n=1 Tax=Theobroma cacao Ta... [more]
A0A5E8C5Q4_9ASCO5.980e-1054.55Uncharacterized protein n=1 Tax=Saprochaete ingens... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig33326contigH-paniculata_contig33326:1945..2112 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score66.2
Seed ortholog evalue5.4e-09
Seed eggNOG ortholog4513.MLOC_79484.1
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37THH@33090,3GG2K@35493,3IKX9@38820,3M2IR@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Exons1
Model size168
Cds size168
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930029.6867435-CDS-H-paniculata_contig33326:1944..21121622930029.6867435-CDS-H-paniculata_contig33326:1944..2112Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33326 1945..2112 -
1691481117.2195525-CDS-H-paniculata_contig33326:1944..21121691481117.2195525-CDS-H-paniculata_contig33326:1944..2112Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33326 1945..2112 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig33326.8935.1prot_H-paniculata_contig33326.8935.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig33326 1945..2112 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig33326.8935.1

>prot_H-paniculata_contig33326.8935.1 ID=prot_H-paniculata_contig33326.8935.1|Name=mRNA_H-paniculata_contig33326.8935.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=56bp
HCRTKHIGVRWHGIREWIREGVFVLKYVQTGDQLADILTKGLSRVKFQRL
RNSLM*
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mRNA from alignment at H-paniculata_contig33326:1945..2112-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig33326.8935.1 ID=mRNA_H-paniculata_contig33326.8935.1|Name=mRNA_H-paniculata_contig33326.8935.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=168bp|location=Sequence derived from alignment at H-paniculata_contig33326:1945..2112- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACTGCAGGACAAAACACATCGGAGTGCGCTGGCACGGAATCCGAGAGTG GATCCGGGAAGGAGTATTCGTGTTGAAATACGTGCAGACCGGCGATCAAC TTGCTGACATTTTAACGAAAGGATTAAGCAGAGTAAAGTTTCAGAGACTG AGAAATTCACTCATGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig33326:1945..2112-

>mRNA_H-paniculata_contig33326.8935.1 ID=mRNA_H-paniculata_contig33326.8935.1|Name=mRNA_H-paniculata_contig33326.8935.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=336bp|location=Sequence derived from alignment at H-paniculata_contig33326:1945..2112- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACTGCAGGACAAAACACATCGGAGTGCGCTGGCACGGAATCCGAGAGTG
GATCCGGGAAGGAGTATTCGTGTTGAAATACGTGCAGACCGGCGATCAAC
TTGCTGACATTTTAACGAAAGGATTAAGCAGAGTAAAGTTTCAGAGACTG
AGAAATTCACTCATGTGACACTGCAGGACAAAACACATCGGAGTGCGCTG
GCACGGAATCCGAGAGTGGATCCGGGAAGGAGTATTCGTGTTGAAATACG
TGCAGACCGGCGATCAACTTGCTGACATTTTAACGAAAGGATTAAGCAGA
GTAAAGTTTCAGAGACTGAGAAATTCACTCATGTGA
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