mRNA_H-paniculata_contig33317.8934.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig33317.8934.1 vs. uniprot
Match: D7G354_ECTSI (COP9 signalosome complex subunit 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G354_ECTSI) HSP 1 Score: 164 bits (415), Expect = 6.210e-47 Identity = 83/102 (81.37%), Postives = 93/102 (91.18%), Query Frame = 1
Query: 1 KAKGFEIADGDLLELLGKAITCAVLGKAGPQRSRQMGVLLKDERVESLSRVPGLSTHAQVLTKMYTEQILRKHEMEAFEESLMPHQKAITAEGLPIPVSAMV 306
++KG E+ DLL+LLGKAITCAVLGKAGPQRSRQMGVLL+DERV SL+RVPG STH+QVLTKMYTEQILRKH+MEAFEESLM HQKAITAEGLPIP A++
Sbjct: 215 QSKGLEVDPDDLLQLLGKAITCAVLGKAGPQRSRQMGVLLRDERVGSLARVPGFSTHSQVLTKMYTEQILRKHDMEAFEESLMDHQKAITAEGLPIPERAVM 316
BLAST of mRNA_H-paniculata_contig33317.8934.1 vs. uniprot
Match: A0A7S2FBM7_9STRA (COP9 signalosome complex subunit 4 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FBM7_9STRA) HSP 1 Score: 116 bits (291), Expect = 3.930e-29 Identity = 57/92 (61.96%), Postives = 74/92 (80.43%), Query Frame = 1
Query: 31 DLLELLGKAITCAVLGKAGPQRSRQMGVLLKDERVESLSRVPGLSTHAQVLTKMYTEQILRKHEMEAFEESLMPHQKAITAEGLPIPVSAMV 306
+LLEL GKA TCA+LGKAGPQR R +G L KDER+ +L ++ G STHAQVLTKMY +QILR+ E+ AFE+SL PHQKA+T++ + IP A++
Sbjct: 188 ELLELFGKATTCAILGKAGPQRDRILGSLYKDERLGTLEQLEGYSTHAQVLTKMYMQQILRRTELRAFEDSLSPHQKAMTSDKMTIPQRAVI 279
BLAST of mRNA_H-paniculata_contig33317.8934.1 vs. uniprot
Match: A0A835ZDX9_9STRA (COP9 signalosome complex subunit 4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDX9_9STRA) HSP 1 Score: 110 bits (276), Expect = 7.930e-27 Identity = 58/97 (59.79%), Postives = 70/97 (72.16%), Query Frame = 1
Query: 16 EIADGDLLELLGKAITCAVLGKAGPQRSRQMGVLLKDERVESLSRVPGLSTHAQVLTKMYTEQILRKHEMEAFEESLMPHQKAITAEGLPIPVSAMV 306
+IA DLLELLG+ ITCAVLGKAGPQR+R + KD R+ SL VP H+QVLTKMY Q+LRK+EM+AFEE L HQKA +GL IP A++
Sbjct: 207 QIAAEDLLELLGRGITCAVLGKAGPQRTRILANFYKDPRLASLENVPPFQAHSQVLTKMYKCQVLRKNEMKAFEEGLAEHQKAKMGDGLTIPERAVI 303
BLAST of mRNA_H-paniculata_contig33317.8934.1 vs. uniprot
Match: A0A7S3H9J9_9STRA (COP9 signalosome complex subunit 4 n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H9J9_9STRA) HSP 1 Score: 110 bits (274), Expect = 1.770e-26 Identity = 51/93 (54.84%), Postives = 70/93 (75.27%), Query Frame = 1
Query: 10 GFEIADGDLLELLGKAITCAVLGKAGPQRSRQMGVLLKDERVESLSRVPGLSTHAQVLTKMYTEQILRKHEMEAFEESLMPHQKAITAEGLPI 288
G+ + DLLELLGKA+TCA+LGKAG QRSR +G+L+KDER+ L ++H VLTKM+ EQIL++HE++ F ++LMPHQKA+ +G I
Sbjct: 221 GYNVLQEDLLELLGKAVTCAILGKAGQQRSRVLGLLIKDERLADLDNTAKYTSHRVVLTKMHLEQILKRHELDLFVQALMPHQKAVAGDGYSI 313
BLAST of mRNA_H-paniculata_contig33317.8934.1 vs. uniprot
Match: A0A7S0SZ10_9STRA (COP9 signalosome complex subunit 4 (Fragment) n=2 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SZ10_9STRA) HSP 1 Score: 107 bits (267), Expect = 2.110e-26 Identity = 54/97 (55.67%), Postives = 69/97 (71.13%), Query Frame = 1
Query: 16 EIADGDLLELLGKAITCAVLGKAGPQRSRQMGVLLKDERVESLSRVPGLSTHAQVLTKMYTEQILRKHEMEAFEESLMPHQKAITAEGLPIPVSAMV 306
EI DLLELLGKAITC +L KAGPQR+R + + KD+R+ L ++P S H+ VL KM EQ+LRK E+ F ESL PHQKA+T+EG IP A++
Sbjct: 108 EIVQDDLLELLGKAITCVILAKAGPQRTRILAQINKDDRLGQLEQLPKYSIHSNVLNKMSNEQLLRKDELNQFIESLAPHQKAMTSEGFTIPEKAVI 204
BLAST of mRNA_H-paniculata_contig33317.8934.1 vs. uniprot
Match: A0A6V1T605_HETAK (COP9 signalosome complex subunit 4 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1T605_HETAK) HSP 1 Score: 107 bits (268), Expect = 1.160e-25 Identity = 54/95 (56.84%), Postives = 69/95 (72.63%), Query Frame = 1
Query: 16 EIADGDLLELLGKAITCAVLGKAGPQRSRQMGVLLKDERVESLSRVPGLSTHAQVLTKMYTEQILRKHEMEAFEESLMPHQKAITAEGLPIPVSA 300
E+ DL+ELLGKA+TCA+LG+AGPQRSR +G L +DER + L L+ HA +L KMYTEQI+R + AF ESLMPHQKA+ G+ IP +A
Sbjct: 213 EVVQDDLVELLGKAVTCALLGRAGPQRSRTLGALYQDERTQGLP----LAAHADILAKMYTEQIIRPGNLTAFVESLMPHQKALLGNGMTIPEAA 303
BLAST of mRNA_H-paniculata_contig33317.8934.1 vs. uniprot
Match: A0A7S4HIZ8_9STRA (COP9 signalosome complex subunit 4 n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HIZ8_9STRA) HSP 1 Score: 102 bits (254), Expect = 1.750e-24 Identity = 50/102 (49.02%), Postives = 68/102 (66.67%), Query Frame = 1
Query: 1 KAKGFEIADGDLLELLGKAITCAVLGKAGPQRSRQMGVLLKDERVESLSRVPGLSTHAQVLTKMYTEQILRKHEMEAFEESLMPHQKAITAEGLPIPVSAMV 306
+A+ I DLL +LG+A TCA+L +GPQR R +G++ KDER+ L +P TH+ VLTKMY Q+LRK E+ FE SL PHQKA+ +GL I A++
Sbjct: 80 QARSDMIDSDDLLNMLGRAATCAILAPSGPQRQRILGLVFKDERLSQLDSLPEFETHSAVLTKMYMNQVLRKDELTKFENSLAPHQKAVMGDGLTIVERAVI 181
BLAST of mRNA_H-paniculata_contig33317.8934.1 vs. uniprot
Match: A0A7S4HJB9_9STRA (COP9 signalosome complex subunit 4 n=2 Tax=Odontellaceae TaxID=2749909 RepID=A0A7S4HJB9_9STRA) HSP 1 Score: 102 bits (254), Expect = 1.070e-23 Identity = 50/102 (49.02%), Postives = 68/102 (66.67%), Query Frame = 1
Query: 1 KAKGFEIADGDLLELLGKAITCAVLGKAGPQRSRQMGVLLKDERVESLSRVPGLSTHAQVLTKMYTEQILRKHEMEAFEESLMPHQKAITAEGLPIPVSAMV 306
+A+ I DLL +LG+A TCA+L +GPQR R +G++ KDER+ L +P TH+ VLTKMY Q+LRK E+ FE SL PHQKA+ +GL I A++
Sbjct: 202 QARSDMIDSDDLLNMLGRAATCAILAPSGPQRQRILGLVFKDERLSQLDSLPEFETHSAVLTKMYMNQVLRKDELTKFENSLAPHQKAVMGDGLTIVERAVI 303
BLAST of mRNA_H-paniculata_contig33317.8934.1 vs. uniprot
Match: F0Y2X5_AURAN (COP9 signalosome complex subunit 4 (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y2X5_AURAN) HSP 1 Score: 101 bits (251), Expect = 2.480e-23 Identity = 52/103 (50.49%), Postives = 73/103 (70.87%), Query Frame = 1
Query: 1 KAKGFEIADGDLLELLGKAITCAVLGKAGPQRSRQMGVLLKDERVES-LSRVPGLSTHAQVLTKMYTEQILRKHEMEAFEESLMPHQKAITAEGLPIPVSAMV 306
+A+ E+ DLL LL KA+TCA+LG AGPQRSR +G+L KDERV S + + + HA+VL +M+T Q++R E+ AF +L+PHQKA+ +GL IP AM+
Sbjct: 190 QARHEEVNQDDLLALLSKAVTCALLGNAGPQRSRILGLLYKDERVTSQMEQSDAFAAHARVLKRMFTGQVVRTPEIAAFTATLLPHQKALLGDGLTIPEKAMI 292
BLAST of mRNA_H-paniculata_contig33317.8934.1 vs. uniprot
Match: A0A7S1ZHU0_TRICV (COP9 signalosome complex subunit 4 (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZHU0_TRICV) HSP 1 Score: 100 bits (250), Expect = 4.460e-23 Identity = 48/96 (50.00%), Postives = 65/96 (67.71%), Query Frame = 1
Query: 19 IADGDLLELLGKAITCAVLGKAGPQRSRQMGVLLKDERVESLSRVPGLSTHAQVLTKMYTEQILRKHEMEAFEESLMPHQKAITAEGLPIPVSAMV 306
I +LL +LG+A TCA+L +GPQR R +G++ KDER+ L +P TH+ VLTKMY Q+LRK E+ FE SL PHQKA+ +GL I A++
Sbjct: 221 IESDELLNMLGRAATCAILAPSGPQRQRILGLVFKDERLSQLDAMPEFETHSAVLTKMYMNQVLRKEELTKFENSLAPHQKAVMGDGLTIVERAVI 316 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig33317.8934.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig33317.8934.1 >prot_H-paniculata_contig33317.8934.1 ID=prot_H-paniculata_contig33317.8934.1|Name=mRNA_H-paniculata_contig33317.8934.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=102bp KAKGFEIADGDLLELLGKAITCAVLGKAGPQRSRQMGVLLKDERVESLSRback to top mRNA from alignment at H-paniculata_contig33317:541..2145- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig33317.8934.1 ID=mRNA_H-paniculata_contig33317.8934.1|Name=mRNA_H-paniculata_contig33317.8934.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1605bp|location=Sequence derived from alignment at H-paniculata_contig33317:541..2145- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig33317:541..2145- >mRNA_H-paniculata_contig33317.8934.1 ID=mRNA_H-paniculata_contig33317.8934.1|Name=mRNA_H-paniculata_contig33317.8934.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at H-paniculata_contig33317:541..2145- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |