mRNA_H-paniculata_contig3330.8927.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3330.8927.1
Unique NamemRNA_H-paniculata_contig3330.8927.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3330.8927.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3330contigH-paniculata_contig3330:14226..15571 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size828
Cds size828
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930028.9963691-CDS-H-paniculata_contig3330:14225..144951622930028.9963691-CDS-H-paniculata_contig3330:14225..14495Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3330 14226..14495 +
1691481116.9255235-CDS-H-paniculata_contig3330:14225..144951691481116.9255235-CDS-H-paniculata_contig3330:14225..14495Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3330 14226..14495 +
1622930029.0136735-CDS-H-paniculata_contig3330:15013..155711622930029.0136735-CDS-H-paniculata_contig3330:15013..15571Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3330 15014..15571 +
1691481116.937873-CDS-H-paniculata_contig3330:15013..155711691481116.937873-CDS-H-paniculata_contig3330:15013..15571Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3330 15014..15571 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3330.8927.1prot_H-paniculata_contig3330.8927.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3330 14226..15571 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3330.8927.1

>prot_H-paniculata_contig3330.8927.1 ID=prot_H-paniculata_contig3330.8927.1|Name=mRNA_H-paniculata_contig3330.8927.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=276bp
MSGLPGRGVPGGMGGGYPMSPQGKARAGGGGLVSTGVPVSQQQHQQHQQH
QHQQHQHPGFGSQQYHPEPQQHQKHQHLGYHGGTSSQQLQDRRLGRVPQQ
QQQQQQQQQHPQPAYRDSSPLRGMGSQSGPLPHNSQPQQPPGTSTVVTFQ
RTSSGGRLGGGSSGGGGGGSGGGSLSQPGLGAAVVPQVGGGSGGPRPPFS
ELLSSQLSSHRGVGTGAGPSPGENPGGGVRGGSPHRTPPKILYGGPSGVV
DPPFAGGAMLHRYHPYGAGAGGGLGG
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mRNA from alignment at H-paniculata_contig3330:14226..15571+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3330.8927.1 ID=mRNA_H-paniculata_contig3330.8927.1|Name=mRNA_H-paniculata_contig3330.8927.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1346bp|location=Sequence derived from alignment at H-paniculata_contig3330:14226..15571+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCTGGACTGCCGGGGAGGGGTGTACCGGGGGGTATGGGGGGAGGCTA
TCCGATGTCCCCCCAGGGTAAGGCGCGGGCGGGAGGTGGAGGGTTGGTGT
CGACTGGGGTTCCGGTGTCACAACAGCAGCACCAGCAGCATCAACAGCAC
CAACACCAGCAGCACCAGCACCCTGGGTTTGGTTCGCAACAGTATCACCC
GGAGCCGCAACAGCACCAGAAGCATCAGCACCTGGGGTATCATGGCGGCA
CGTCGTCGCAGCAACTGCAGGTATGGTGGGTGGCGGGGCGGAAAGAAATG
TAGAATAATTTGGACGATACTGGTGTTTTTGTTTTTTAAAGGCTTCGACC
CCACTAATGAGGGGTCCATTCTAGCAGTACATACATTACTAGCTCTAGTT
AATTTTTGCCTACCTGCTGCGGGAGCGATGTAGGTCCGACCAACAGAACA
CTGGAACCTACTTGTACAGGCTGATTTGGCGGAGTTGTACTAATTGTCTA
TACTGATTTGTTCTTCTCACGTGTGCTATTATGATGACATGAAGCTTGTA
TTTCTGAGATTGGTCTCTCACTTTGTACTGTACTGTACTGTACTGTACAG
TGCCGTGCCGTGCTTACCTGCCGACAAAATTCAAAATTCATACCTTCATC
CTTGGGCGTACATCTCGTCTCCGTTTCGTTTGCGAAAAGAAGATCCACAC
AAGAACCAACAGCGATGAGACAGACTAACATACATGCACACCTGCAAGCT
CCTCTCACACCACGGTTTTTGCACCCTGCCTCCCGTAGGACCGGAGGCTA
GGCCGCGTCCCACAACAACAACAACAGCAACAGCAACAGCAACAGCACCC
TCAGCCGGCTTACCGGGACTCATCCCCTCTCCGGGGGATGGGCAGCCAAT
CCGGCCCTCTGCCTCACAACAGTCAACCCCAACAACCCCCCGGTACGTCA
ACGGTCGTCACATTCCAACGGACCAGCAGCGGCGGACGGTTGGGCGGCGG
AAGCAGCGGGGGCGGTGGTGGCGGAAGCGGGGGAGGGTCTTTGTCTCAGC
CAGGACTCGGGGCAGCAGTCGTCCCGCAAGTTGGCGGAGGGAGCGGGGGC
CCCAGGCCTCCATTTTCAGAACTGTTATCGTCCCAGTTGTCATCTCATAG
GGGGGTAGGAACGGGTGCTGGGCCGTCCCCGGGTGAAAACCCTGGTGGAG
GCGTGCGTGGCGGAAGCCCGCATCGAACTCCACCTAAAATTCTGTATGGG
GGCCCGTCGGGGGTGGTGGATCCTCCTTTCGCTGGAGGAGCGATGCTGCA
TCGATATCACCCATATGGTGCTGGTGCTGGTGGTGGGCTGGGTGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig3330:14226..15571+

>mRNA_H-paniculata_contig3330.8927.1 ID=mRNA_H-paniculata_contig3330.8927.1|Name=mRNA_H-paniculata_contig3330.8927.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1656bp|location=Sequence derived from alignment at H-paniculata_contig3330:14226..15571+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCTGGACTGCCGGGGAGGGGTGTACCGGGGGGTATGGGGGGAGGCTA
TCCGATGTCCCCCCAGGGTAAGGCGCGGGCGGGAGGTGGAGGGTTGGTGT
CGACTGGGGTTCCGGTGTCACAACAGCAGCACCAGCAGCATCAACAGCAC
CAACACCAGCAGCACCAGCACCCTGGGTTTGGTTCGCAACAGTATCACCC
GGAGCCGCAACAGCACCAGAAGCATCAGCACCTGGGGTATCATGGCGGCA
CGTCGTCGCAGCAACTGCAGATGTCTGGACTGCCGGGGAGGGGTGTACCG
GGGGGTATGGGGGGAGGCTATCCGATGTCCCCCCAGGGTAAGGCGCGGGC
GGGAGGTGGAGGGTTGGTGTCGACTGGGGTTCCGGTGTCACAACAGCAGC
ACCAGCAGCATCAACAGCACCAACACCAGCAGCACCAGCACCCTGGGTTT
GGTTCGCAACAGTATCACCCGGAGCCGCAACAGCACCAGAAGCATCAGCA
CCTGGGGTATCATGGCGGCACGTCGTCGCAGCAACTGCAGGACCGGAGGC
TAGGCCGCGTCCCACAACAACAACAACAGCAACAGCAACAGCAACAGCAC
CCTCAGCCGGCTTACCGGGACTCATCCCCTCTCCGGGGGATGGGCAGCCA
ATCCGGCCCTCTGCCTCACAACAGTCAACCCCAACAACCCCCCGGTACGT
CAACGGTCGTCACATTCCAACGGACCAGCAGCGGCGGACGGTTGGGCGGC
GGAAGCAGCGGGGGCGGTGGTGGCGGAAGCGGGGGAGGGTCTTTGTCTCA
GCCAGGACTCGGGGCAGCAGTCGTCCCGCAAGTTGGCGGAGGGAGCGGGG
GCCCCAGGCCTCCATTTTCAGAACTGTTATCGTCCCAGTTGTCATCTCAT
AGGGGGGTAGGAACGGGTGCTGGGCCGTCCCCGGGTGAAAACCCTGGTGG
AGGCGTGCGTGGCGGAAGCCCGCATCGAACTCCACCTAAAATTCTGTATG
GGGGCCCGTCGGGGGTGGTGGATCCTCCTTTCGCTGGAGGAGCGATGCTG
CATCGATATCACCCATATGGTGCTGGTGCTGGTGGTGGGCTGGGTGGGGA
CCGGAGGCTAGGCCGCGTCCCACAACAACAACAACAGCAACAGCAACAGC
AACAGCACCCTCAGCCGGCTTACCGGGACTCATCCCCTCTCCGGGGGATG
GGCAGCCAATCCGGCCCTCTGCCTCACAACAGTCAACCCCAACAACCCCC
CGGTACGTCAACGGTCGTCACATTCCAACGGACCAGCAGCGGCGGACGGT
TGGGCGGCGGAAGCAGCGGGGGCGGTGGTGGCGGAAGCGGGGGAGGGTCT
TTGTCTCAGCCAGGACTCGGGGCAGCAGTCGTCCCGCAAGTTGGCGGAGG
GAGCGGGGGCCCCAGGCCTCCATTTTCAGAACTGTTATCGTCCCAGTTGT
CATCTCATAGGGGGGTAGGAACGGGTGCTGGGCCGTCCCCGGGTGAAAAC
CCTGGTGGAGGCGTGCGTGGCGGAAGCCCGCATCGAACTCCACCTAAAAT
TCTGTATGGGGGCCCGTCGGGGGTGGTGGATCCTCCTTTCGCTGGAGGAG
CGATGCTGCATCGATATCACCCATATGGTGCTGGTGCTGGTGGTGGGCTG
GGTGGG
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