mRNA_H-paniculata_contig3330.8925.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3330.8925.1
Unique NamemRNA_H-paniculata_contig3330.8925.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3330.8925.1 vs. uniprot
Match: D8LN70_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN70_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 2.030e-9
Identity = 126/364 (34.62%), Postives = 154/364 (42.31%), Query Frame = 1 
Query:  556 AAASGHLV---RVEQGP--RAGEGDTMPGLSSSGLGLMPDNWGILQYGLTLENPVA-----ASSLDASPGRKHRLRSGEHTDGLGGS----GHGGRGEDRSSGTGNDNSRLNGRVGVDGSPS---STVAMMMDSLSISDDTPHGDPRRSYAGKAKPREGAAGGALMFGRKGNSGHEGSDLAFPDGGASSGRLHEANHADEAGGGGLEGNGGGASFGFLDSRSPKFEPMSDERTSLRQXXXXXXLSHRK-QSIPP--PLHPTRALGGSPSLGPRHPRRSRPPRVNLDTGRFSPSVGGLP--------------DNVHGTDGSGRXXXXXXXXXXXXXXXSGRFRWSFPPPGMSG---GEVGDGPG 1536
            AAA GH +     E+ P   A EG+ + G SS+  G   DNWGILQYGLTLE+PVA     A S  A+ G + + R  E  D  G S    G GG G   S        R +GR+G  G+ S   ++VAMMM SLSI+ D       +S AG+   R GA       GR G  G +      P+ G         N AD+    G           FLD                  XXXXXX      QS  P  PLHP R +GGSPSL P+      P R+  D G F  S                   D++HG+  +G                SG  RWSFPPPGM G   G  G+G G
Sbjct:  394 AAAGGHQLPSMATEKPPPGAAAEGNAVHGGSSTA-GPPVDNWGILQYGLTLEDPVAGHGSDAPSAAAADGSQRQQRLSEKMDSAGRSTAAEGRGGGGGQFSXXXXXXXXRGSGRLGGQGASSXXXASVAMMMGSLSIAGD-------QSAAGQ---RYGAGN---ELGRGGGGGGQ------PEDGV--------NFADDYDLVGPPDGXXXXXXXFLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSTAPRTPLHPRRGVGGSPSLTPQ------PRRLPHDVGGFPASGASAATXXXXXXNVTAMSTDHLHGSGSNGAVGGGAPLA-------SGLLRWSFPPPGMPGHPGGVTGEGDG 716
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3330.8925.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LN70_ECTSI2.030e-934.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3330contigH-paniculata_contig3330:7803..9880 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1647
Cds size1647
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930028.7945583-CDS-H-paniculata_contig3330:7802..78651622930028.7945583-CDS-H-paniculata_contig3330:7802..7865Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3330 7803..7865 +
1691481116.8564496-CDS-H-paniculata_contig3330:7802..78651691481116.8564496-CDS-H-paniculata_contig3330:7802..7865Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3330 7803..7865 +
1622930028.8372836-CDS-H-paniculata_contig3330:8296..98801622930028.8372836-CDS-H-paniculata_contig3330:8296..9880Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3330 8297..9880 +
1691481116.8660326-CDS-H-paniculata_contig3330:8296..98801691481116.8660326-CDS-H-paniculata_contig3330:8296..9880Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3330 8297..9880 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3330.8925.1prot_H-paniculata_contig3330.8925.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3330 7803..9880 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3330.8925.1

>prot_H-paniculata_contig3330.8925.1 ID=prot_H-paniculata_contig3330.8925.1|Name=mRNA_H-paniculata_contig3330.8925.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=549bp
LNLGGFPVVRGGGRGRHGNFQDHASLSQQVTDEHGGRHETGGGRTPGLSK
SGRYLRNDSCGRGRHEALGAFHEAAEQEHSQLGAEAVNMRGNNQSNPLSY
ETYTVDGGGRRYDGSSSGGGGGGGASAAEASFTSAARESSSSFRISEGAV
EEVAATGDRDRTDFGDLRKPSSSSTDAAVAGVASVAAASGHLVRVEQGPR
AGEGDTMPGLSSSGLGLMPDNWGILQYGLTLENPVAASSLDASPGRKHRL
RSGEHTDGLGGSGHGGRGEDRSSGTGNDNSRLNGRVGVDGSPSSTVAMMM
DSLSISDDTPHGDPRRSYAGKAKPREGAAGGALMFGRKGNSGHEGSDLAF
PDGGASSGRLHEANHADEAGGGGLEGNGGGASFGFLDSRSPKFEPMSDER
TSLRQQQQQQQLSHRKQSIPPPLHPTRALGGSPSLGPRHPRRSRPPRVNL
DTGRFSPSVGGLPDNVHGTDGSGRGGAGAGAGTGAGAGSSGRFRWSFPPP
GMSGGEVGDGPGGALHQASMTHRLDELGATDGHGVGTGTGSGSSGDGNS
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mRNA from alignment at H-paniculata_contig3330:7803..9880+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3330.8925.1 ID=mRNA_H-paniculata_contig3330.8925.1|Name=mRNA_H-paniculata_contig3330.8925.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2078bp|location=Sequence derived from alignment at H-paniculata_contig3330:7803..9880+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGAATCTTGGCGGGTTTCCAGTTGTTAGAGGCGGAGGCCGAGGGAGACA
TGGGAACTTTCAGGTGAGAACTTATATTGTAGTTAGCGTGGCCGCGCAGG
GTTGAATTATTGTAGACAGATGGCTAGTGGTTGCGGTGGTCGATGACAGA
AGAGGGTCAACCCGCAACATTTCCGTGTTGTTGTGCTGTGCCTAGGCTAT
TCTGGCATTTCTCTGTTTCTCGGTTTGCTAGTTTATTGTTGGCATTTCAG
TGACCTTGAGGCTTCACTGTGCGTTCAACGCTGGGATCTAATTGTACGTT
CGTGCAGCCTTACAGCCTCTTGAGTTTTTTCAGTACCGTAAACGCACCAC
GTCTTCGTCACAGAGTGCTGTGCCTATCGTTGCCTCTGCCTTTGTACATG
TTTCCATCGTATGTTCTATCGAGCCCCCGTGGTACTTCGTCATTACCCCG
TGCATACCCTTACCCCCCCACACGCGCACGCAATGTATTCACAGGATCAC
GCTTCCTTGTCTCAGCAGGTTACAGATGAGCATGGCGGTCGCCATGAAAC
GGGCGGTGGGAGAACGCCCGGACTGTCCAAGAGCGGGCGATATTTGAGGA
ATGATTCTTGCGGACGGGGAAGACACGAGGCTCTGGGAGCGTTTCACGAG
GCTGCGGAACAAGAGCACTCGCAGCTTGGAGCGGAGGCCGTAAACATGCG
TGGAAACAATCAAAGTAACCCTCTGTCTTACGAGACCTACACCGTTGACG
GGGGGGGAAGGCGATACGATGGCAGCAGCAGCGGCGGCGGTGGCGGTGGT
GGAGCTAGTGCGGCCGAGGCTTCGTTTACATCTGCTGCCCGCGAATCGTC
ATCATCGTTCCGTATTAGCGAAGGAGCCGTGGAGGAGGTTGCAGCGACAG
GGGATAGGGATAGGACGGACTTCGGCGATTTACGGAAACCATCTTCATCA
AGCACAGATGCGGCCGTAGCGGGGGTGGCGAGTGTAGCGGCGGCGAGCGG
GCATTTAGTAAGGGTAGAGCAGGGGCCACGCGCAGGGGAAGGCGACACAA
TGCCGGGTCTCAGCAGCAGCGGGTTGGGTCTTATGCCTGACAACTGGGGT
ATATTGCAGTACGGTCTGACGCTGGAGAACCCGGTTGCTGCTTCTAGCTT
AGACGCGTCGCCAGGACGGAAGCACCGTCTGCGCTCAGGCGAACATACTG
ATGGCCTTGGCGGGTCAGGACATGGGGGGCGAGGGGAAGACAGAAGCAGT
GGGACAGGCAATGATAATAGTAGACTCAACGGGAGAGTTGGGGTGGATGG
GTCACCTTCTTCAACAGTGGCCATGATGATGGATTCGCTGTCTATAAGCG
ATGACACACCGCATGGCGACCCGCGGCGCTCGTATGCGGGCAAGGCGAAG
CCTAGAGAAGGTGCCGCCGGCGGGGCGCTCATGTTCGGTCGCAAAGGTAA
CTCTGGCCACGAGGGGAGTGACCTAGCATTTCCAGACGGCGGTGCTAGTT
CGGGACGATTGCACGAGGCTAACCACGCGGACGAGGCCGGCGGAGGCGGC
CTTGAGGGTAATGGCGGTGGCGCCAGCTTCGGCTTTCTCGACAGCCGCTC
GCCAAAATTTGAGCCCATGAGTGACGAACGCACCTCGCTGCGACAGCAGC
AGCAGCAGCAGCAGCTGTCTCATAGAAAACAATCCATTCCACCGCCCTTA
CATCCCACACGAGCGCTTGGAGGTTCCCCATCCCTCGGGCCGAGGCACCC
CCGACGCAGTCGACCCCCGCGCGTGAACCTCGACACCGGAAGATTTTCCC
CTTCCGTAGGTGGACTCCCCGACAATGTCCACGGTACAGACGGTTCGGGC
AGAGGCGGCGCCGGCGCCGGGGCCGGGACCGGGGCTGGTGCGGGGTCATC
CGGGCGATTCCGCTGGTCTTTCCCTCCACCCGGAATGTCTGGGGGCGAGG
TCGGTGACGGACCCGGAGGAGCGCTGCACCAGGCTTCTATGACTCATCGG
TTGGACGAGCTAGGGGCGACAGACGGTCACGGAGTCGGGACGGGAACGGG
GTCGGGATCGAGCGGCGATGGGAATTCC
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Coding sequence (CDS) from alignment at H-paniculata_contig3330:7803..9880+

>mRNA_H-paniculata_contig3330.8925.1 ID=mRNA_H-paniculata_contig3330.8925.1|Name=mRNA_H-paniculata_contig3330.8925.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3294bp|location=Sequence derived from alignment at H-paniculata_contig3330:7803..9880+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGAATCTTGGCGGGTTTCCAGTTGTTAGAGGCGGAGGCCGAGGGAGACA
TGGGAACTTTCAGTTGAATCTTGGCGGGTTTCCAGTTGTTAGAGGCGGAG
GCCGAGGGAGACATGGGAACTTTCAGGATCACGCTTCCTTGTCTCAGCAG
GTTACAGATGAGCATGGCGGTCGCCATGAAACGGGCGGTGGGAGAACGCC
CGGACTGTCCAAGAGCGGGCGATATTTGAGGAATGATTCTTGCGGACGGG
GAAGACACGAGGCTCTGGGAGCGTTTCACGAGGCTGCGGAACAAGAGCAC
TCGCAGCTTGGAGCGGAGGCCGTAAACATGCGTGGAAACAATCAAAGTAA
CCCTCTGTCTTACGAGACCTACACCGTTGACGGGGGGGGAAGGCGATACG
ATGGCAGCAGCAGCGGCGGCGGTGGCGGTGGTGGAGCTAGTGCGGCCGAG
GCTTCGTTTACATCTGCTGCCCGCGAATCGTCATCATCGTTCCGTATTAG
CGAAGGAGCCGTGGAGGAGGTTGCAGCGACAGGGGATAGGGATAGGACGG
ACTTCGGCGATTTACGGAAACCATCTTCATCAAGCACAGATGCGGCCGTA
GCGGGGGTGGCGAGTGTAGCGGCGGCGAGCGGGCATTTAGTAAGGGTAGA
GCAGGGGCCACGCGCAGGGGAAGGCGACACAATGCCGGGTCTCAGCAGCA
GCGGGTTGGGTCTTATGCCTGACAACTGGGGTATATTGCAGTACGGTCTG
ACGCTGGAGAACCCGGTTGCTGCTTCTAGCTTAGACGCGTCGCCAGGACG
GAAGCACCGTCTGCGCTCAGGCGAACATACTGATGGCCTTGGCGGGTCAG
GACATGGGGGGCGAGGGGAAGACAGAAGCAGTGGGACAGGCAATGATAAT
AGTAGACTCAACGGGAGAGTTGGGGTGGATGGGTCACCTTCTTCAACAGT
GGCCATGATGATGGATTCGCTGTCTATAAGCGATGACACACCGCATGGCG
ACCCGCGGCGCTCGTATGCGGGCAAGGCGAAGCCTAGAGAAGGTGCCGCC
GGCGGGGCGCTCATGTTCGGTCGCAAAGGTAACTCTGGCCACGAGGGGAG
TGACCTAGCATTTCCAGACGGCGGTGCTAGTTCGGGACGATTGCACGAGG
CTAACCACGCGGACGAGGCCGGCGGAGGCGGCCTTGAGGGTAATGGCGGT
GGCGCCAGCTTCGGCTTTCTCGACAGCCGCTCGCCAAAATTTGAGCCCAT
GAGTGACGAACGCACCTCGCTGCGACAGCAGCAGCAGCAGCAGCAGCTGT
CTCATAGAAAACAATCCATTCCACCGCCCTTACATCCCACACGAGCGCTT
GGAGGTTCCCCATCCCTCGGGCCGAGGCACCCCCGACGCAGTCGACCCCC
GCGCGTGAACCTCGACACCGGAAGATTTTCCCCTTCCGTAGGTGGACTCC
CCGACAATGTCCACGGTACAGACGGTTCGGGCAGAGGCGGCGCCGGCGCC
GGGGCCGGGACCGGGGCTGGTGCGGGGTCATCCGGGCGATTCCGCTGGTC
TTTCCCTCCACCCGGAATGTCTGGGGGCGAGGTCGGTGACGGACCCGGAG
GAGCGCTGCACCAGGCTTCTATGACTCATCGGTTGGACGAGCTAGGGGCG
ACAGACGGTCACGGAGTCGGGACGGGAACGGGGTCGGGATCGAGCGGCGA
TGGGAATTCCGATCACGCTTCCTTGTCTCAGCAGGTTACAGATGAGCATG
GCGGTCGCCATGAAACGGGCGGTGGGAGAACGCCCGGACTGTCCAAGAGC
GGGCGATATTTGAGGAATGATTCTTGCGGACGGGGAAGACACGAGGCTCT
GGGAGCGTTTCACGAGGCTGCGGAACAAGAGCACTCGCAGCTTGGAGCGG
AGGCCGTAAACATGCGTGGAAACAATCAAAGTAACCCTCTGTCTTACGAG
ACCTACACCGTTGACGGGGGGGGAAGGCGATACGATGGCAGCAGCAGCGG
CGGCGGTGGCGGTGGTGGAGCTAGTGCGGCCGAGGCTTCGTTTACATCTG
CTGCCCGCGAATCGTCATCATCGTTCCGTATTAGCGAAGGAGCCGTGGAG
GAGGTTGCAGCGACAGGGGATAGGGATAGGACGGACTTCGGCGATTTACG
GAAACCATCTTCATCAAGCACAGATGCGGCCGTAGCGGGGGTGGCGAGTG
TAGCGGCGGCGAGCGGGCATTTAGTAAGGGTAGAGCAGGGGCCACGCGCA
GGGGAAGGCGACACAATGCCGGGTCTCAGCAGCAGCGGGTTGGGTCTTAT
GCCTGACAACTGGGGTATATTGCAGTACGGTCTGACGCTGGAGAACCCGG
TTGCTGCTTCTAGCTTAGACGCGTCGCCAGGACGGAAGCACCGTCTGCGC
TCAGGCGAACATACTGATGGCCTTGGCGGGTCAGGACATGGGGGGCGAGG
GGAAGACAGAAGCAGTGGGACAGGCAATGATAATAGTAGACTCAACGGGA
GAGTTGGGGTGGATGGGTCACCTTCTTCAACAGTGGCCATGATGATGGAT
TCGCTGTCTATAAGCGATGACACACCGCATGGCGACCCGCGGCGCTCGTA
TGCGGGCAAGGCGAAGCCTAGAGAAGGTGCCGCCGGCGGGGCGCTCATGT
TCGGTCGCAAAGGTAACTCTGGCCACGAGGGGAGTGACCTAGCATTTCCA
GACGGCGGTGCTAGTTCGGGACGATTGCACGAGGCTAACCACGCGGACGA
GGCCGGCGGAGGCGGCCTTGAGGGTAATGGCGGTGGCGCCAGCTTCGGCT
TTCTCGACAGCCGCTCGCCAAAATTTGAGCCCATGAGTGACGAACGCACC
TCGCTGCGACAGCAGCAGCAGCAGCAGCAGCTGTCTCATAGAAAACAATC
CATTCCACCGCCCTTACATCCCACACGAGCGCTTGGAGGTTCCCCATCCC
TCGGGCCGAGGCACCCCCGACGCAGTCGACCCCCGCGCGTGAACCTCGAC
ACCGGAAGATTTTCCCCTTCCGTAGGTGGACTCCCCGACAATGTCCACGG
TACAGACGGTTCGGGCAGAGGCGGCGCCGGCGCCGGGGCCGGGACCGGGG
CTGGTGCGGGGTCATCCGGGCGATTCCGCTGGTCTTTCCCTCCACCCGGA
ATGTCTGGGGGCGAGGTCGGTGACGGACCCGGAGGAGCGCTGCACCAGGC
TTCTATGACTCATCGGTTGGACGAGCTAGGGGCGACAGACGGTCACGGAG
TCGGGACGGGAACGGGGTCGGGATCGAGCGGCGATGGGAATTCC
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