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Homology
BLAST of mRNA_H-paniculata_contig333.8921.1 vs. uniprot
Match: D8LJW3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJW3_ECTSI) HSP 1 Score: 77.0 bits (188), Expect = 1.740e-14 Identity = 34/54 (62.96%), Postives = 43/54 (79.63%), Query Frame = 1
Query: 400 LGYQLDLDRGCMVTAAEIDIPLEPDGTGLPAVSQWFCDSCASIETGVVACLAKR 561
+GYQLDLDR C++TA+++DIP++ TGLP V QWFCDSC+S TGVVA A R
Sbjct: 1 MGYQLDLDRSCLITASDVDIPID-SVTGLPVVCQWFCDSCSSTVTGVVAATAGR 53
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | PHD-type zinc finger protein |
| Ec32 ortholog | Ec-01_009900.1 |
| Exons | 2 |
| Model size | 848 |
| Cds size | 489 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig333.8921.1 >prot_H-paniculata_contig333.8921.1 ID=prot_H-paniculata_contig333.8921.1|Name=mRNA_H-paniculata_contig333.8921.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=163bp
MAKTTGKRKKQQAAPTVSTAEEEEEGLQGQEEQAGEVGCAICNHDRAVNC
AESPSGSAISSTASMAASNTQPQRMDNTHMEEQQQKEEPSFALRCNSCRK
WYHPWCLGYQLDLDRGCMVTAAEIDIPLEPDGTGLPAVSQWFCDSCASIE
TGVVACLAKRSR* back to topmRNA from alignment at H-paniculata_contig333:20776..23212- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig333.8921.1 ID=mRNA_H-paniculata_contig333.8921.1|Name=mRNA_H-paniculata_contig333.8921.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2437bp|location=Sequence derived from alignment at H-paniculata_contig333:20776..23212- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTGAACTTGGAAGGATCCTATTACGTTGTACTATCCTAACATTCGAAG
GGTGTGCAATATCAACTCGGGGTTAAACATAATGGCAAAAACAACAGGTA
AAAGGAAGAAGCAACAAGCGGCGCCCACAGTGTCGACGGCAGAAGAAGAA
GAGGAAGGACTGCAAGGACAAGAAGAACAAGCAGGAGAAGTTGGCTGCGC
GATTTGCAACCACGACAGGGCCGTCAACTGTGCTGAGAGCCCGAGTGGAA
GTGCCATCAGCTCTACTGCTAGTATGGCAGCATCAAATACACAACCACAA
CGCATGGATAACACGCACATGGAAGAACAGCAGCAGAAAGAGGAACCATC
GTTTGCCCTGAGGTGCAACAGCTGCAGGAAGTGGTACCATCCATGGTGTC
TGGGATATCAGCTCGATCTAGACCGCGGCTGCATGGTTACCGCCGCTGAA
ATCGATATTCCGCTCGAGCCGGACGGGACAGGCCTTCCTGCTGTATCCCA
GTGGTTCTGCGACTCATGCGCATCCATCGAGACTGGAGTTGTAGCGTGCT
TGGCAAAACGGTCTCGATGACTGCACTGACTTGCTACTAAAGGCTCTGTA
GCGTTGAATTTCCTGCATGACCACCGCACGTGATATGTTCCATCTCAAGT
ACATGAAGATGTCTGCCCGTGTGGGGAATCGAAGCATTGATGGATATCCT
ACCTGTGTGGTGTGCTTCTTGGGAACGTCCCAACAGCGCTTTTCTAGTCC
GGTGAGATGGAGGAGATGCGTTTGTGTCCAACAATGGCTTGTATAGCCAC
ACAAAATAGTTGCCTCACAGCTGAGTACTCTAGACCCATGTTCACTGACT
CGTATACTTGAATTTACTGGCGAGGTGCACACATAGTCGAATTGCGTACT
AATTTGTCGATGTGCAGTCAGTACAGAACAGTACTGTAGTGAGCAGTACA
GTTATCTTTCTGCCTGAGACAGATGCATGTCACAAACTACTATATTTGAG
TAAAACCACAAACCGCGAGTGTGCTCGTTGTGACCTTGATGCCAAAGGTT
GTTTTGGAACAACAATGGAATTGACACCCGGAACAACAGAGGCATCGAAT
AAGAACTGCCGTATGTTGCAGTCCTTGTAGGTAGAACCACGCCAACTGCT
ACCTGTCGGAGCTTTGTGTGTACTGTCGATCTGGACATGCTACCTGTCGG
TTCTGTGTGTGTGCTGTCTGTCTGGACATGCTACCTGCCGGTGCTGTGTG
TGCACTGTCTGTCTGAATAGCATCAACTTTCTATCCCAAATTACTGCGTC
ATCGGCGCAGGGAGAGGAATAGCTTCAAGTTTTGACACCTATGCCCTGAA
AACTGATGAGGCCCCAGAAAAACAAACGCGGGGGGGGGGAGGGAGATGTT
GAGCACGTGGGCTACGACCTTCACAACACAGCATCACTGTATCGTTCGGT
TTATGTATTGTATATAAACATGAAATAATGTTCACAAAAACGAACCCCTC
CTTCCACCTACTTGCCATAGTCGGTAAAATACTCCCGACCACGCATTTTG
AGGTTGTGCAGCTGCCCTCAAACTTCAATTTTGTGTTACTATCAGCAAAA
AATTATCAACGGGGTAGACAAGGCGTTGAGGTTATGCGGCCAATCTGAAG
ACTCATTTGTGTACACTTCCCAGCTGAACTAGATTGAATTGGGCGGGGGG
GGGCGGAGGTGTCAAAATTGAGAGATATGGCAAGCATCGTCTGTCCCTGT
TTTTACGCTTCGGTTCAGATGGGACTGACTGGATTGGGGCCGGCGCTAAA
ATGTCCAATATGCTGTTCCGTACTCAGCCACTTTCAAGCCTTCACCCCTA
GGACGAAACGTCCAAGCATCGTGCGCCCTTGATATGTTGCAGTATAAATG
CGTGTGCTGAGGAATATTTCCTAGGCTCCTTGCGCCTGATGATGTCTCTA
CAAGCAAAGAACAAGAGTAGTGATTCTTCGTTACAGACCCCGCGCAGGGG
AAGTACATGAGAGTAACTGGTGGGGGCAACGCACCCCAAAAACAAAGCTC
TCAGCCTGCAACTTGACGGAACCAATTCCAAACTGAACCGAATCAAAACC
CTAATAACTATGTTTTTAGTAGTTGTTCCCAGAACGCCTCCCTCAAATAT
TATAGTATAGCGTCACAGCAGCTAATCTCTCATCTGAACCTTGGATGGGA
AAACAACACAAACAATCGAACTTGTGCCTACTATTTATTCCTCAAAGCTC
CGCATTGGCTGAAGTCGTCTACATTCCCTAACTTGTTACTCTCGTGTACC
ATCTCCATTACTCCTCGTCTTATCGCTACCCCGAATACAGAGGCCGGGCA
CCAGCGAAGCATAATGAGCCGGCAGACGGGATGGCCTTGTTGACTTGGCC
GAGAAGCCATGCACCCTGTAGATATTAAGAGGCAGGA back to topCoding sequence (CDS) from alignment at H-paniculata_contig333:20776..23212- >mRNA_H-paniculata_contig333.8921.1 ID=mRNA_H-paniculata_contig333.8921.1|Name=mRNA_H-paniculata_contig333.8921.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=978bp|location=Sequence derived from alignment at H-paniculata_contig333:20776..23212- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCAAAAACAACAGGTAAAAGGAAGAAGCAACAAGCGGCGCCCACAGT
GTCGACGGCAGAAGAAGAAGAGGAAGGACTGCAAGGACAAGAAGAACAAG
CAGGAGAAGTTGGCTGCGCGATTTGCAACCACGACAGGGCCGTCAACTGT
GCTGAGAGCCCGAGTGGAAGTGCCATCAGCTCTACTGCTAGTATGGCAGC
ATCAAATACACAACCACAACGCATGGATAACACGCACATGGAAGAACAGC
AGCAGAAAGAGGAACCATCGTTTGCCCTGAGGTGCAACAGCTGCAGGAAG
TGGTACCATCCATGGTGTCTGGGATATCAGCTCGATCTAGACCGCGGCTG
CATGGTTACCGCCGCTGAAATCGATATTCCGCTCGAGCCGGACGGGACAG
GCCTTCCTGCTGTATCCCAGTGGTTCTGCGACTCATGCGCATCCATCGAG
ACTGGAGTTGTAGCGTGCTTGGCAAAACGGTCTCGATGAATGGCAAAAAC
AACAGGTAAAAGGAAGAAGCAACAAGCGGCGCCCACAGTGTCGACGGCAG
AAGAAGAAGAGGAAGGACTGCAAGGACAAGAAGAACAAGCAGGAGAAGTT
GGCTGCGCGATTTGCAACCACGACAGGGCCGTCAACTGTGCTGAGAGCCC
GAGTGGAAGTGCCATCAGCTCTACTGCTAGTATGGCAGCATCAAATACAC
AACCACAACGCATGGATAACACGCACATGGAAGAACAGCAGCAGAAAGAG
GAACCATCGTTTGCCCTGAGGTGCAACAGCTGCAGGAAGTGGTACCATCC
ATGGTGTCTGGGATATCAGCTCGATCTAGACCGCGGCTGCATGGTTACCG
CCGCTGAAATCGATATTCCGCTCGAGCCGGACGGGACAGGCCTTCCTGCT
GTATCCCAGTGGTTCTGCGACTCATGCGCATCCATCGAGACTGGAGTTGT
AGCGTGCTTGGCAAAACGGTCTCGATGA back to top
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