mRNA_H-paniculata_contig333.8919.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig333.8919.1
Unique NamemRNA_H-paniculata_contig333.8919.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig333.8919.1 vs. uniprot
Match: D8LJX0_ECTSI (MutS protein homolog 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJX0_ECTSI)

HSP 1 Score: 331 bits (849), Expect = 1.050e-98
Identity = 181/264 (68.56%), Postives = 207/264 (78.41%), Query Frame = 3 
Query:    3 GLIVLMAQMGSFVPADVAVIPVRDRLLSRIGTGDDMENNVSTFLMEMREVSQALERVTSRSLVLIDELGRGTSNQEGLAIAWAVAEKLLSSCAYTLFVTHYTQIPGLADLYPNVKNIHLETAVMTSSAG---------KTTGLRYLHKAQEGRCNPGDAYGIRTAEMCGLPWEIVEDARALRAQVIANAKAKSIQGSTGALSQGEYDAHELLRTLAMLKGSTMDDSTLREFLHVLSLDY-KASKTERITATLSAVTRSVGATAA 764
            GLIVLMAQMG +VPA++AVIPVR  LLSRIGTGDD+ENNVSTFLMEMRE++Q          V+IDELGRGTSN+EGLA+AWAVAEKLLSS AYTLFVTHY+Q+PGLADLYPNV+NIHL+TA+  ++A          +T  LRYLHKA +GRC+PGD YGIRTAEMCGLPWEIVE+AR LR QVI   KAK I+GS GA S+ E DA+ELLRTLA LKGSTMD   LREFLHVLSL+Y K  K  RI A+L   T + G  AA
Sbjct:  570 GLIVLMAQMGCYVPAEMAVIPVRTSLLSRIGTGDDLENNVSTFLMEMREIAQ----------VMIDELGRGTSNREGLAVAWAVAEKLLSSSAYTLFVTHYSQMPGLADLYPNVENIHLQTALAPAAAXXXXXXXXXXQTGALRYLHKALDGRCDPGDGYGIRTAEMCGLPWEIVEEARVLRTQVIDATKAKEIKGSAGAPSEAEKDAYELLRTLATLKGSTMDPIALREFLHVLSLEYGKGPKGARILASLPPSTTTHGTDAA 823
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BLAST of mRNA_H-paniculata_contig333.8919.1 vs. uniprot
Match: A0A6H5JUC5_9PHAE (DNA_MISMATCH_REPAIR_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUC5_9PHAE)

HSP 1 Score: 317 bits (812), Expect = 6.720e-98
Identity = 161/215 (74.88%), Postives = 184/215 (85.58%), Query Frame = 3 
Query:    3 GLIVLMAQMGSFVPADVAVIPVRDRLLSRIGTGDDMENNVSTFLMEMREVSQALERVTSRSLVLIDELGRGTSNQEGLAIAWAVAEKLLSSCAYTLFVTHYTQIPGLADLYPNVKNIHLETAVMTSSA---------GKTTGLRYLHKAQEGRCNPGDAYGIRTAEMCGLPWEIVEDARALRAQVIANAKAKSIQGSTGALSQGEYDAHELLRTL 620
            GLIVLMAQMG +VPA++AVIPVR  LLSRIGTGDD+ENNVSTFLMEMRE++Q LERVTSRSLV+IDELGRGTSN+EGLA+AWAVAE+LLSS AYTLFVTHY+Q+PGLADLYPNV+NIHL+TA+  ++          G T  LRYLHKA +GRC+PGD YGIRTAEMCGLPWEIVE+AR LR QVI   KAK I+GS GALS+ E DA+ELLRTL
Sbjct:  233 GLIVLMAQMGCYVPAEMAVIPVRTSLLSRIGTGDDLENNVSTFLMEMREIAQVLERVTSRSLVMIDELGRGTSNREGLAVAWAVAEQLLSSSAYTLFVTHYSQMPGLADLYPNVENIHLQTALAPAATATGATGGMGGHTGALRYLHKALDGRCDPGDGYGIRTAEMCGLPWEIVEEARVLRTQVIDATKAKEIKGSAGALSEAEKDAYELLRTL 447
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BLAST of mRNA_H-paniculata_contig333.8919.1 vs. uniprot
Match: A0A812XQZ9_SYMMI (MSH4 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812XQZ9_SYMMI)

HSP 1 Score: 198 bits (503), Expect = 9.540e-55
Identity = 108/228 (47.37%), Postives = 150/228 (65.79%), Query Frame = 3 
Query:    6 LIVLMAQMGSFVPADVAVIPVRDRLLSRIGTGDDMENNVSTFLMEMREVSQALERVTSRSLVLIDELGRGTSNQEGLAIAWAVAEKLLSSCAYTLFVTHYTQIPGLADLYPNVKNIHLETAVMTSSAGKTTGLRYLHKAQEGRCNPGDAYGIRTAEMCGLPWEIVEDARALRAQVIANAKAKSIQGSTGALSQGE--YDAHELLRTLAMLKGSTMDDSTLREFLHVLS 683
            +IV+MAQMG +VPA  AV+P+RD++ SRIGTGDDMENN+S+F +EM+E +  L  ++ +SLV++DELGRGTSN +G+AIA AV E LLS+ AYT FVTHY+Q+  LA +Y NVKN+H  T V   S+     L YLHK  EG C+    YG+  AE CGL  E +  AR  + + +      +++   G +S     + A  L++ L +LK ST+DD  +R +L  LS
Sbjct:   78 IIVIMAQMGCYVPARHAVVPIRDQIFSRIGTGDDMENNLSSFQVEMKETAHVLRSLSDQSLVIVDELGRGTSNADGVAIALAVGEYLLSTAAYTFFVTHYSQVAALAAMYANVKNVHFLTTVDVGSSA----LGYLHKIAEGPCDMKSGYGLLVAESCGLSEEFIAMARDFQRR-LRRTYPLALRTREGVVSAAARMHRATALVQRLVILKDSTLDDGGIRSYLAGLS 300
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BLAST of mRNA_H-paniculata_contig333.8919.1 vs. uniprot
Match: A0A7S2UJ16_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UJ16_9STRA)

HSP 1 Score: 182 bits (463), Expect = 6.650e-48
Identity = 89/173 (51.45%), Postives = 120/173 (69.36%), Query Frame = 3 
Query:   12 VLMAQMGSFVPADVAVIPVRDRLLSRIGTGDDMENNVSTFLMEMREVSQALERVTSRSLVLIDELGRGTSNQEGLAIAWAVAEKLLSSCAYTLFVTHYTQIPGLADLYPNVKNIHLETAVMTSSAGKTTGLRYLHKAQEGRCNPGDAYGIRTAEMCGLPWEIVEDARALRAQV 530
            V++AQ GS++PA+ A IPVRDRL +RIGT DD E+N+STF++EM+E +      T +SL+L+DELGR TSN++G+AIAWAV+E LL   A+T FVTHY Q+  LAD+YPNV+N HL   +    +G+   +RY HK   G C     YG+  A  CG P +IV++AR LR  V
Sbjct:   13 VVLAQCGSYIPAEEAFIPVRDRLCTRIGTADDQEHNISTFMLEMKETAFICRNATHKSLILMDELGRATSNEDGVAIAWAVSEFLLVKRAFTFFVTHYPQLSSLADVYPNVQNQHLGATISAERSGE---IRYTHKIMPGPCIMSTDYGVEMAATCGWPADIVKEARLLRTHV 182
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BLAST of mRNA_H-paniculata_contig333.8919.1 vs. uniprot
Match: A0A485LLE7_9STRA (Aste57867_22902 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LLE7_9STRA)

HSP 1 Score: 173 bits (439), Expect = 1.790e-44
Identity = 97/218 (44.50%), Postives = 135/218 (61.93%), Query Frame = 3 
Query:    9 IVLMAQMGSFVPADVAVIPVRDRLLSRIGTGDDMENNVSTFLMEMREVSQALERVTSRSLVLIDELGRGTSNQEGLAIAWAVAEKLLSSCAYTLFVTHYTQIPGLADLYPNVKNIHLETAVMTSSAGKTTGLRYLHKAQEGRCNPGDAYGIRTAEMCGLPWEIVEDARALRAQVIANAKAKSIQGSTGALSQGEYDAHELLRTLAMLKGSTMDDSTLR 662
            + ++A +G +VPA  A IP+RDRL +R GT DDM+ N STF +EM+E +  L+  T+RSLVL+DELGRGTSN EG AIAW+V E L+++ AY LF TH+  +  LADLYPN +N HL+     +S   T  LR+ +K Q+G       YG++ A +CGLP EI EDA  L   V     A+  +    A  +     + LL++L  L+ S +D+  LR
Sbjct:  190 VTILAHIGCYVPAIEATIPLRDRLFTRFGTSDDMQENASTFTVEMQETAFILDNCTTRSLVLMDELGRGTSNDEGFAIAWSVCETLMNTGAYCLFSTHFHGLRELADLYPNCRNCHLQ-----ASTTDTNILRFQYKLQDGPTELRHGYGLKMARVCGLPKEICEDAEMLHPHV-----AQREENLVAANDETCALQNMLLQSLMALRYSKLDEKELR 397
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BLAST of mRNA_H-paniculata_contig333.8919.1 vs. uniprot
Match: D0N2V3_PHYIT (DNA mismatch repair protein mutS, putative n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0N2V3_PHYIT)

HSP 1 Score: 170 bits (430), Expect = 4.990e-43
Identity = 98/236 (41.53%), Postives = 139/236 (58.90%), Query Frame = 3 
Query:    6 LIVLMAQMGSFVPADVAVIPVRDRLLSRIGTGDDMENNVSTFLMEMREVSQALERVTSRSLVLIDELGRGTSNQEGLAIAWAVAEKLLSSCAYTLFVTHYTQIPGLADLYPNVKNIHLETAVMTSSAGKTTGLRYLHKAQEGRCNPGDAYGIRTAEMCGLPWEIVEDARALRAQVIANAKA-KSIQGSTGALSQGEYDAHELLRTLAMLKGSTMDDSTLREFLHVLSLDYKASKTE 710
            LI +MAQMG +VPA  A+IP+RDR+ +R GT DDME N STF +EM E +  LE  T +SL+LIDELGRGTSN EG AIAW++AE+++   +YT F THY Q+  LA +YP  +  H+ T   TSS       RY+ K  +G       YGI+TA +CGLP E++ +A     ++ ++ +A ++      A +        LL  L  L+ + +D++ LR  L  L   +    TE
Sbjct:  199 LITIMAQMGCYVPASKAIIPIRDRICTRFGTSDDMEENASTFAVEMTETAFILEASTPKSLILIDELGRGTSNDEGAAIAWSIAEEIIDRGSYTCFATHYHQLNRLAQMYPRCRCYHMGTESNTSSVS----FRYILK--DGPFPSTGMYGIKTAALCGLPAELIREAERTYEKLRSDREAAETATNQDSATNDTSKINRNLLHHLYALRYADLDNAGLRRQLQYLRNRFLVPATE 428
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BLAST of mRNA_H-paniculata_contig333.8919.1 vs. uniprot
Match: A0A024FYL5_9STRA (DNA_MISMATCH_REPAIR_2 domain-containing protein n=7 Tax=Albugo candida TaxID=65357 RepID=A0A024FYL5_9STRA)

HSP 1 Score: 167 bits (424), Expect = 1.470e-42
Identity = 93/225 (41.33%), Postives = 137/225 (60.89%), Query Frame = 3 
Query:    6 LIVLMAQMGSFVPADVAVIPVRDRLLSRIGTGDDMENNVSTFLMEMREVSQALERVTSRSLVLIDELGRGTSNQEGLAIAWAVAEKLLSSCAYTLFVTHYTQIPGLADLYPNVKNIHLETAVMTSSAGKTTGLRYLHKAQEGRCNPGDAYGIRTAEMCGLPWEIVEDARALRAQVIANAKAKSIQGSTGALSQGEYDAHELLRTLAMLKGSTMDDSTLREFLHVL 680
            +I ++A MG +VPA  A +P+RDR+ +R GT DDME N STF +EM E +  LE+ T  SLVL+DELGRGT++ EG A+AW+++E L++   YT F TH+ Q+  LA++Y N K  HL      +++   T +RY H   +G C     YGI+ A+MCGLP +I+ DA  +  ++ +N    SI+ ST  +S G  ++  L   LA++    +D   LR  L  L
Sbjct:  167 IITILAHMGCYVPAVAAFLPLRDRICTRFGTSDDMEENASTFKVEMTETAFILEKATKASLVLVDELGRGTASDEGCALAWSISENLIAKGIYTCFATHFRQLNELANVYINCKCYHL------AASFSETNVRYFHTLNDGACPEYPKYGIQAAKMCGLPMQIIRDAEEIYDRLKSNQH--SIKTSTS-VSVGRVESRLLHHLLALIHAG-LDKKALRVQLQSL 381
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BLAST of mRNA_H-paniculata_contig333.8919.1 vs. uniprot
Match: A0A225X3Z3_9STRA (DNA mismatch repair protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X3Z3_9STRA)

HSP 1 Score: 162 bits (409), Expect = 2.560e-42
Identity = 92/215 (42.79%), Postives = 129/215 (60.00%), Query Frame = 3 
Query:   18 MAQMGSFVPADVAVIPVRDRLLSRIGTGDDMENNVSTFLMEMREVSQALERVTSRSLVLIDELGRGTSNQEGLAIAWAVAEKLLSSCAYTLFVTHYTQIPGLADLYPNVKNIHLETAVMTSSAGKTTGLRYLHKAQEGRCNPGDAYGIRTAEMCGLPWEIVEDARALRAQVIANAKAKSIQGSTGALSQGEYDAHELLRTLAMLKGSTMDDSTLR 662
            MAQMG +VPA  A IP+RDR+ +R GT DDME N S+F +EM E +  LE  T+RSLVLIDELGRGT+N EG AIAW++AE+++   +YT F THY Q+  LA LYP  +  H+ T + T+S      + + H  ++G       YGI+TA + GLP EI+ +A  +  ++  N +A     ST   +        LL  L  L+ + +D + LR
Sbjct:    1 MAQMGCYVPATQASIPIRDRICTRFGTSDDMEENASSFAVEMTETAFILEACTTRSLVLIDELGRGTANDEGAAIAWSIAEEIIQRGSYTCFATHYHQLNRLAQLYPRCRCYHMGTELNTNS------VHFRHVLKDGPYPSTGLYGIKTAALSGLPVEIIREAERIYEKLRINREATENAVST--TNNATRINRNLLHHLYALRYADLDYAGLR 207
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BLAST of mRNA_H-paniculata_contig333.8919.1 vs. uniprot
Match: A0A2D4BPU4_PYTIN (DNA mismatch repair protein mutS, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BPU4_PYTIN)

HSP 1 Score: 167 bits (424), Expect = 3.860e-42
Identity = 93/221 (42.08%), Postives = 137/221 (61.99%), Query Frame = 3 
Query:    6 LIVLMAQMGSFVPADVAVIPVRDRLLSRIGTGDDMENNVSTFLMEMREVSQALERVTSRSLVLIDELGRGTSNQEGLAIAWAVAEKLLSSCAYTLFVTHYTQIPGLADLYPNVKNIHLETAVMTSSAGKTTGLRYLHKAQEGRCNPGDAYGIRTAEMCGLPWEIVEDARALRAQVIANAKAKSIQGSTGAL--SQGEYDAHELLRTLAMLKGSTMDDSTLR 662
            LI ++AQMG +VPA  AVIP+RDR+ +R GT DDME N STFL+EM E S  L+  T++SLV  DELGRGTS+ EG A+AW+VAE+L+S   YT F THY  +  L+ LY N ++ H+ + V T+S      L++ +K  +G     + YGI+TA +CG+P  I+++A+    Q++ N    S  G++  +  +  + +A +L+  L  L       ST R
Sbjct:  216 LITILAQMGCYVPASDAVIPLRDRICTRFGTSDDMEENASTFLVEMNETSFILDTCTTKSLVXXDELGRGTSSDEGFALAWSVAEELISRRVYTCFATHYHGLHRLSXLYSNCRSYHMTSRVATTS------LQFQYKLVDGPSRSVEMYGIQTARVCGIPPAIIQEAQVFYEQLVRN----SASGTSDEIVTTSTDSEASQLIHQLLALHDWKSYTSTYR 426
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BLAST of mRNA_H-paniculata_contig333.8919.1 vs. uniprot
Match: A0A1V9Y5B5_9STRA (DNA mismatch repair protein mutS n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Y5B5_9STRA)

HSP 1 Score: 161 bits (407), Expect = 3.890e-42
Identity = 89/218 (40.83%), Postives = 135/218 (61.93%), Query Frame = 3 
Query:   27 MGSFVPADVAVIPVRDRLLSRIGTGDDMENNVSTFLMEMREVSQALERVTSRSLVLIDELGRGTSNQEGLAIAWAVAEKLLSSCAYTLFVTHYTQIPGLADLYPNVKNIHLETAVMTSSAGKTTGLRYLHKAQEGRCNPGDAYGIRTAEMCGLPWEIVEDARALRAQVIANAKAKSIQGSTGALSQGEYDAHELLRTLAMLKGSTMDDSTLREFLHVL 680
            MG FVPA  A IP+R R+ +R GT DDME N STF +EM E++  L+ ++S+SL+LIDELGRGTSN+EGLAIAW+  E L+ + AYT F TH+  +  L+ +Y N +N HLE +  +++      L + +K   G  +    YGI+ A++CGLP E V DA  L+  ++A+   +++  +    ++ +   ++LL  L  L  + +D+  LR  LH L
Sbjct:    1 MGCFVPAAEAHIPLRTRIFTRFGTSDDMEENASTFTVEMLELAFILDNLSSKSLILIDELGRGTSNEEGLAIAWSTCETLMHTKAYTCFATHFHGLRELSTMYANCRNFHLEASNTSANL-----LAFKYKLSNGPSDRSHGYGIQMAKVCGLPTETVRDAEQLKEAMLAS---QNMDPNIIVDTRNKNLNNKLLHHLMALGHANLDNDALRRRLHRL 210
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig333.8919.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJX0_ECTSI1.050e-9868.56MutS protein homolog 4 n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5JUC5_9PHAE6.720e-9874.88DNA_MISMATCH_REPAIR_2 domain-containing protein n=... [more]
A0A812XQZ9_SYMMI9.540e-5547.37MSH4 protein (Fragment) n=1 Tax=Symbiodinium micro... [more]
A0A7S2UJ16_9STRA6.650e-4851.45Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A485LLE7_9STRA1.790e-4444.50Aste57867_22902 protein n=1 Tax=Aphanomyces stella... [more]
D0N2V3_PHYIT4.990e-4341.53DNA mismatch repair protein mutS, putative n=1 Tax... [more]
A0A024FYL5_9STRA1.470e-4241.33DNA_MISMATCH_REPAIR_2 domain-containing protein n=... [more]
A0A225X3Z3_9STRA2.560e-4242.79DNA mismatch repair protein n=1 Tax=Phytophthora m... [more]
A0A2D4BPU4_PYTIN3.860e-4242.08DNA mismatch repair protein mutS, putative n=1 Tax... [more]
A0A1V9Y5B5_9STRA3.890e-4240.83DNA mismatch repair protein mutS n=1 Tax=Achlya hy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig333contigH-paniculata_contig333:5378..10490 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score325.1
Seed ortholog evalue4.5e-86
Seed eggNOG ortholog2880.D8LJX0
Preferred nameMSH4
KEGG koko:K08740
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000228,GO:0000280,GO:0000710,GO:0000793,GO:0000794,GO:0000795,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005911,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007127,GO:0007129,GO:0007131,GO:0008094,GO:0008150,GO:0008152,GO:0009506,GO:0009987,GO:0010777,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022402,GO:0022414,GO:0022607,GO:0030054,GO:0030983,GO:0031974,GO:0031981,GO:0033554,GO:0034641,GO:0035825,GO:0042623,GO:0043073,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0045132,GO:0045143,GO:0046483,GO:0048285,GO:0050896,GO:0051026,GO:0051276,GO:0051321,GO:0051716,GO:0055044,GO:0061982,GO:0070013,GO:0070192,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0098813,GO:0099086,GO:0140013,GO:1901360,GO:1901363,GO:1903046
EggNOG free text desc.chiasma assembly
EggNOG OGsCOG0249@1,KOG0220@2759
Ec32 ortholog descriptionMutS protein homolog 4
Ec32 orthologEc-01_009980.1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03400
Exons6
Model size1899
Cds size1182
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig333.8919.1prot_H-paniculata_contig333.8919.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig333 5395..9790 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930028.0098772-UTR-H-paniculata_contig333:5377..53941622930028.0098772-UTR-H-paniculata_contig333:5377..5394Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig333 5378..5394 +
1691481116.4828212-UTR-H-paniculata_contig333:5377..53941691481116.4828212-UTR-H-paniculata_contig333:5377..5394Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig333 5378..5394 +
1622930028.1230512-UTR-H-paniculata_contig333:9790..104901622930028.1230512-UTR-H-paniculata_contig333:9790..10490Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig333 9791..10490 +
1691481116.5664194-UTR-H-paniculata_contig333:9790..104901691481116.5664194-UTR-H-paniculata_contig333:9790..10490Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig333 9791..10490 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930028.026484-CDS-H-paniculata_contig333:5394..55351622930028.026484-CDS-H-paniculata_contig333:5394..5535Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig333 5395..5535 +
1691481116.4963822-CDS-H-paniculata_contig333:5394..55351691481116.4963822-CDS-H-paniculata_contig333:5394..5535Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig333 5395..5535 +
1622930028.0517828-CDS-H-paniculata_contig333:6178..62081622930028.0517828-CDS-H-paniculata_contig333:6178..6208Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig333 6179..6208 +
1691481116.5055897-CDS-H-paniculata_contig333:6178..62081691481116.5055897-CDS-H-paniculata_contig333:6178..6208Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig333 6179..6208 +
1622930028.067362-CDS-H-paniculata_contig333:6690..68541622930028.067362-CDS-H-paniculata_contig333:6690..6854Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig333 6691..6854 +
1691481116.5175593-CDS-H-paniculata_contig333:6690..68541691481116.5175593-CDS-H-paniculata_contig333:6690..6854Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig333 6691..6854 +
1622930028.0841792-CDS-H-paniculata_contig333:7493..76671622930028.0841792-CDS-H-paniculata_contig333:7493..7667Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig333 7494..7667 +
1691481116.527288-CDS-H-paniculata_contig333:7493..76671691481116.527288-CDS-H-paniculata_contig333:7493..7667Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig333 7494..7667 +
1622930028.0985591-CDS-H-paniculata_contig333:8424..85181622930028.0985591-CDS-H-paniculata_contig333:8424..8518Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig333 8425..8518 +
1691481116.5442843-CDS-H-paniculata_contig333:8424..85181691481116.5442843-CDS-H-paniculata_contig333:8424..8518Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig333 8425..8518 +
1622930028.1109335-CDS-H-paniculata_contig333:9211..97901622930028.1109335-CDS-H-paniculata_contig333:9211..9790Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig333 9212..9790 +
1691481116.5548484-CDS-H-paniculata_contig333:9211..97901691481116.5548484-CDS-H-paniculata_contig333:9211..9790Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig333 9212..9790 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig333.8919.1

>prot_H-paniculata_contig333.8919.1 ID=prot_H-paniculata_contig333.8919.1|Name=mRNA_H-paniculata_contig333.8919.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=394bp
MAQMGSFVPADVAVIPVRDRLLSRIGTGDDMENNVSTFLMEMREVSQALE
RVTSRSLVLIDELGRGTSNQEGLAIAWAVAEKLLSSCAYTLFVTHYTQIP
GLADLYPNVKNIHLETAVMTSSAGKTTGLRYLHKAQEGRCNPGDAYGIRT
AEMCGLPWEIVEDARALRAQVIANAKAKSIQGSTGALSQGEYDAHELLRT
LAMLKGSTMDDSTLREFLHVLSLDYKASKTERITATLSAVTRSVGATAAS
KTTTEPDAALGYEKDGVGLAQEGGPHSPAAAPTYSGEMLDATGATERGLP
SPPTQDLSTSTISAAAQTTGCIDAVDGRATVRDRNVGSGSGDGGECVGAA
TISSTELDMSPANTRTDEFSGNFGSIAEAGTAIGKVSISGGGW*
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mRNA from alignment at H-paniculata_contig333:5378..10490+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig333.8919.1 ID=mRNA_H-paniculata_contig333.8919.1|Name=mRNA_H-paniculata_contig333.8919.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5113bp|location=Sequence derived from alignment at H-paniculata_contig333:5378..10490+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTCTGATCGTGCTGATGGCCCAAATGGGGTCCTTCGTACCGGCGGAC
GTTGCTGTCATTCCCGTGCGCGATCGGCTCTTGTCACGCATAGGCACCGG
CGATGACATGGAAAACAACGTCTCTACCTTTCTCATGGAAATGAGAGAGG
TGTCTCAGGTGTGCAACAATGAAACGCCTCTCCCTGATCATGTTTACCCG
CTGTTAACGCACTGCTTTTACTCGGCCTTTGTCATGTCTATAATGGGTGA
TTATTTCTGCTTGCCCTTCTCAAATAAAAACAATCAAGACAGTGTGCGAA
GATGAAAGGGCCGAGGGAGCACAGCAGGGTTGGGTCGGGGAGACGGCAAC
AAAGCAGACGTTTCTACTCTCTTCTCGTTGTTTGTTTTCTAGAACGAACG
TGCAGCTGTTATTTCTTGGGGAGAAGGGGATTTCGAAACACTCGATCGTT
ACACAGCAGCGTTCGAAAATACGCTAGTGACTGAGGCTTTAGTCTGTTGA
GAAAGCGGCCTACCCAATATAGGTAGTCGAGTCAACGCTGACTCTACTTT
TAATGGTTGAGCTGCTTTCTGCTTTCTCCCCAAAATTTGTCATTGGCTCG
ATTAGCAATGTGGCTTCCTCTTTGGTGTTCAACCATAGCATAGGAAATCT
GGGGCGAAAAGAAAAGCATGCCTCATGACCTCAGCTCAAAACCCACATAA
TAGAGAACTGCTCCCGCGCATTTCCTTACGTACGGCATGACACGCTCGCT
CTTGCTCTCGTGTTCTTCGTTCGTGTGCCGTATAATATTGATGGCCGGCA
GGCGCTGGAACGAGTAACGAGCAGATCACTGGTAAGCTAGGTCTACGCCA
TCTGCCGCGGGCACGAGAATGTTTTTGTACCGTGCCCCCAACACAGAAAG
AGCGTGAATGGCATCCAACCCACTCCGCTTTCACAGGCCCAGACTCGTAT
CGCTCCCCCTTTCTCTCCATTTCCCCGGTGGTATCATCGTTGAGGTATCA
TTATTGATATCTGCGAAGCGGCGACGTGTTCACCACATTGTAGGTGTTGG
GTGCCCAAGCGTTGCTTTTTTGGAAGTGTGCGCTGGTGCTTTGAAGGAAC
AATGACGGAGTGACGCCGTAGAGTTGATACGCCCGTTCATGCTCTAACTG
CAAACTGATTGACCCTTCATTTTTGCGCGGTGAACGACCAGTCGCCCTCG
CCAGGGTATCCCATACGCGCGACTTCTACAAACGATTACTGAAAAAGCAC
CTGTATGGAGGCACTTGGTACAAACTTTGTATGCACTTCACATACGGCCG
GCTGTTCGCGTAGGTCCTGATTGACGAGCTTGGGCGAGGCACGTCTAACC
AGGAGGGATTGGCGATAGCGTGGGCAGTGGCCGAAAAGCTGCTGTCCTCG
TGTGCCTACACCCTGTTCGTGACGCACTACACTCAGATTCCCGGATTGGC
GGATCTCTACCCTAACGTTAAGAACATGTGAGTTGGGTTACTCGTTTCTG
GGGTGGGGCATTGAGGGAAGGGGGGGGGGGGACGGAGGCGCCGGGGGGGC
AGCAGGGTTGAAGGAACTGCGTCTTGAACCGTAAATTAATTTGGGAATCC
TTGCGAGCAATATTAGTATGCAAGGTTCCACCACGGCGAGAGACACGATT
GCTGCTGAAGCTGAAGAATTCCCCCTCTCGAGATCTTTTTGTTTTGTCGT
TTCAACTTTACCCATAATGCTGGTGAGAAACGGTGGGACTGCTAAGAAAG
TCTCCTATAACACATCGAATTGCCATTCTCCCGACGGATTGAGGGTGCGG
AGCCTCATTAACGTCGTCTGTGATACCCGATCGATTGGCTGCCTCGCCAC
TTGAAAATCAGAACGTCTTCCTCTAGGGTAACCAGGTTATCTCAAAGAAC
TATCTTTTGACACCAGCCGCGTGGTGAAACCTACGTGCTGGATGCTCCCA
CAAGATGATGCGAGAAACGTAACCGTGCATTGTGAACTATCTAGCAGTTG
ACTTCAAAGTGACGCAGCTGCGATCGCTCCATGTTGTATCGTGTACTTAA
AAATCAATCGCTTGCAGGATATCACGTAAACAGTCCTTCTCCATTTGCCG
TTTCTACCACAAGCAGCCACCTAGAAACTGCGGTGATGACGTCGAGCGCA
GGAAAAACCACAGGCCTGCGCTACCTGCACAAGGCGCAGGAAGGGCGATG
CAACCCCGGCGATGCTTACGGAATCAGGACAGCGGAGATGTGTGGCTTGC
CTTGGGAAATCGTTGAGGACGCGCGCGCGTTGCGCGCACAGTGAGTTGCT
ACAGAGAAAGGGAATTTGTGCCTGCAATTTTCCTATTGCTCAACTGAGAG
GGGGGGGGGGAAGTATCCATTTTCGACCACAAATTGTCTTGATTTTAGTG
TATGATCATTTTGGAACAATTTTGATTTCTTTGCTATACTTGGGCGTAGC
GAGTTCAATTTTATATCTTGGTTACATGCAAGTTTCTTGCTCGATGCCTT
GGGCATGGTGCAATGTTGGTGCCAAACGTCAGGTCCGCGCTTGAACTATT
CAAGCATCTAGCTCAAAGAATGGAGCTTAGCATCGCGTTGGCCCCCCCTT
CAGTTGAAACGACTGAACTGCTCGATAGAGTTGTACTCGGTATGCAGCAT
TAACTGATTTTTCTTGATGCGAAAGTGGCTTACTGATCGGCTGTGGAGAT
TCGATTTTTTGCGCCTGGATGTTGATCTTAGATTTGGCCCCTTCTTTGGA
CCGTAAAGTTCAGTAGATATCCCAGGTTTTTGCAATCTTTGCAACGCGGT
TGATCATGAAATCGGAGTAGGTTTCCGAGTTGGCTTCGGTGCAAGTCACC
GTGATTACACTACACCTGGGGCCGTTCCTTTTTTGCGGACGGTGTGCATC
AAACATTTCTTCAATCTAAATCAATTATATCAGCGCTTTTGATCAAGGTC
AGTCAACAAAGTTCAATAGTCAAAGTCTGTCTCTAACACTTATGTTGGTC
TGCGCGATGTGAACCCATTTGGTTGCTGCTTCGAACAACAAACGAAGGGT
GATTGCGAACGCGAAAGCGAAGTCGATCCAGGGTAGCACGGGAGCTTTGT
CGCAGGGCGAGTACGACGCACATGAACTACTAAGGACCCTGGTGAGCCCC
CGTCTTCTTCCCCTTCTTCCGTTGTCTCCCCGGTGTGTCATCTCTTCTTG
TCGCCTCTCTAGGTCGATCTAGAATATGTACGCTGTATGGTCAAGAATGG
GCAATCGAAATTACCACTCCCGCTGTACGAACCAAATTATTCTCCTCAGC
CGTACGTTAATACCAACACATATTGCGGTATTGCGTGTAGCTCTATGTCC
TAATGATACCTGTTGCCACGTGTTCAGGATGCGACTGAGGAAGAGTACTT
TTGGTCAGATAGCGTTTGTTTCATGTTGCCTGGCTTGCCTGAAATAAGGC
TGACATACGGGTTTATTAGTGTTGCTGTTTTTCCCTTACAAATTATTTGC
GGCGAAAAGTCAAGACGATGCAGCGCTCTGTGACATCATATCGGTGATGA
TAGATCTTGATGTGCGATGGCAACTGAGCGTGTTTGATAAAAACCTTCGA
CACCATTAGCCCCAATACTCCCGTCGCTCGCATCAAGAGCCGAAGATCCG
TTGTTATCTGTCTACCTGGTCATAAATTCCAATGGTTCTCAGTAGACGTA
ACAGATGTGTGCATGAACTAGCGACGATTTTGCCTGTTCCCACTCCATTT
TTGCTTAGCCTCCGCGCTTCTGCCTCGAGTGTTCACTTCGTCTTCTCACT
TACGTCTCGCTGCCCCGACACATGTGCCTCCAAGGCGATGCTCAAAGGGT
CCACGATGGATGATTCCACCCTACGAGAATTCCTCCACGTCCTTTCTCTC
GACTACAAAGCCTCGAAAACTGAGCGCATTACTGCTACCCTCTCCGCTGT
CACGAGAAGCGTCGGTGCCACTGCTGCATCCAAGACCACCACTGAGCCAG
ATGCCGCGCTGGGGTACGAGAAGGACGGGGTTGGTCTGGCACAAGAAGGT
GGTCCACACTCACCCGCCGCAGCGCCAACTTACAGTGGCGAGATGCTGGA
CGCTACGGGAGCGACGGAACGAGGGCTGCCATCCCCACCAACTCAAGACC
TTTCGACTTCAACGATATCGGCGGCCGCGCAAACGACGGGATGCATCGAC
GCTGTGGATGGGCGAGCTACCGTTCGAGACAGAAATGTTGGCAGCGGTAG
CGGCGATGGTGGGGAATGTGTGGGTGCGGCAACCATCTCTTCGACCGAGC
TTGACATGAGCCCAGCAAATACGAGGACGGATGAGTTCAGTGGAAACTTT
GGAAGCATCGCGGAGGCGGGCACAGCGATCGGGAAGGTGTCGATTTCTGG
CGGGGGGTGGTGAGGCTTAGGGCGAATTATGATACTAGGCAAGGTCAAGC
CTGCACGTCTTGATTAGATTAGAATATTCTTATCTGTTAAGTTGCTACAT
ACGAGTGTATTTACCTATTTCTGTGTGCTGCGACAATTAGTAGGTGTCGC
TGTATGTATATTTAGAACTGATATTGCTTAGAATTTTCAGTTCTGGGGAC
GTCAGGATTCAAGATAGGCTATGCAGGTGATGGAATACCGGTGGTCATGG
ATTAGCAACACACACGCGTTTGTTGGGAGGTCCGAATATGTGAACTATCT
CTCTACTATCGGAGGGCGAAACATATATGGCACACAGGGTTGGCGCGCCC
TTGATCTTTGTGCAACGCAGGTTGTGCCATCCCACGGTTTGCAGCAATAG
TTACCACATCATAATTGCCAGCGGTTGTTGTACGCATAACGGAGGCTGAG
TGCATCCTCAAGTAGTGCTTGAAGTGTTCGTTTTTTCCTGTATTTACAGT
GTCCCAATATAGACTGCGTCGTCTCCTTTGCTAGTTTACGACCGACTCTT
CAGGTGGCTGTGTGCGTATTGGCGTTTCTGGTGGAGCAAAGATGAAGACA
TGATCCACACTCCAGGGGGTACTGTGTTGCGCTTGTTCAAAGAGTTGAGG
CGTTAGGGATGAAGCCATTAGGGTTGTCTAACTATCATGTTACAAAGAAA
TCAACTTATGTGT
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Coding sequence (CDS) from alignment at H-paniculata_contig333:5378..10490+

>mRNA_H-paniculata_contig333.8919.1 ID=mRNA_H-paniculata_contig333.8919.1|Name=mRNA_H-paniculata_contig333.8919.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2364bp|location=Sequence derived from alignment at H-paniculata_contig333:5378..10490+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCCAAATGGGGTCCTTCGTACCGGCGGACGTTGCTGTCATTCCCGT
GCGCGATCGGCTCTTGTCACGCATAGGCACCGGCGATGACATGGAAAACA
ACGTCTCTACCTTTCTCATGGAAATGAGAGAGGTGTCTCAGATGGCCCAA
ATGGGGTCCTTCGTACCGGCGGACGTTGCTGTCATTCCCGTGCGCGATCG
GCTCTTGTCACGCATAGGCACCGGCGATGACATGGAAAACAACGTCTCTA
CCTTTCTCATGGAAATGAGAGAGGTGTCTCAGGCGCTGGAACGAGTAACG
AGCAGATCACTGGCGCTGGAACGAGTAACGAGCAGATCACTGGTCCTGAT
TGACGAGCTTGGGCGAGGCACGTCTAACCAGGAGGGATTGGCGATAGCGT
GGGCAGTGGCCGAAAAGCTGCTGTCCTCGTGTGCCTACACCCTGTTCGTG
ACGCACTACACTCAGATTCCCGGATTGGCGGATCTCTACCCTAACGTTAA
GAACATGTCCTGATTGACGAGCTTGGGCGAGGCACGTCTAACCAGGAGGG
ATTGGCGATAGCGTGGGCAGTGGCCGAAAAGCTGCTGTCCTCGTGTGCCT
ACACCCTGTTCGTGACGCACTACACTCAGATTCCCGGATTGGCGGATCTC
TACCCTAACGTTAAGAACATCCACCTAGAAACTGCGGTGATGACGTCGAG
CGCAGGAAAAACCACAGGCCTGCGCTACCTGCACAAGGCGCAGGAAGGGC
GATGCAACCCCGGCGATGCTTACGGAATCAGGACAGCGGAGATGTGTGGC
TTGCCTTGGGAAATCGTTGAGGACGCGCGCGCGTTGCGCGCACACCACCT
AGAAACTGCGGTGATGACGTCGAGCGCAGGAAAAACCACAGGCCTGCGCT
ACCTGCACAAGGCGCAGGAAGGGCGATGCAACCCCGGCGATGCTTACGGA
ATCAGGACAGCGGAGATGTGTGGCTTGCCTTGGGAAATCGTTGAGGACGC
GCGCGCGTTGCGCGCACAGGTGATTGCGAACGCGAAAGCGAAGTCGATCC
AGGGTAGCACGGGAGCTTTGTCGCAGGGCGAGTACGACGCACATGAACTA
CTAAGGACCCTGGGTGATTGCGAACGCGAAAGCGAAGTCGATCCAGGGTA
GCACGGGAGCTTTGTCGCAGGGCGAGTACGACGCACATGAACTACTAAGG
ACCCTGGCGATGCTCAAAGGGTCCACGATGGATGATTCCACCCTACGAGA
ATTCCTCCACGTCCTTTCTCTCGACTACAAAGCCTCGAAAACTGAGCGCA
TTACTGCTACCCTCTCCGCTGTCACGAGAAGCGTCGGTGCCACTGCTGCA
TCCAAGACCACCACTGAGCCAGATGCCGCGCTGGGGTACGAGAAGGACGG
GGTTGGTCTGGCACAAGAAGGTGGTCCACACTCACCCGCCGCAGCGCCAA
CTTACAGTGGCGAGATGCTGGACGCTACGGGAGCGACGGAACGAGGGCTG
CCATCCCCACCAACTCAAGACCTTTCGACTTCAACGATATCGGCGGCCGC
GCAAACGACGGGATGCATCGACGCTGTGGATGGGCGAGCTACCGTTCGAG
ACAGAAATGTTGGCAGCGGTAGCGGCGATGGTGGGGAATGTGTGGGTGCG
GCAACCATCTCTTCGACCGAGCTTGACATGAGCCCAGCAAATACGAGGAC
GGATGAGTTCAGTGGAAACTTTGGAAGCATCGCGGAGGCGGGCACAGCGA
TCGGGAAGGTGTCGATTTCTGGCGGGGGGTGGTGAGCGATGCTCAAAGGG
TCCACGATGGATGATTCCACCCTACGAGAATTCCTCCACGTCCTTTCTCT
CGACTACAAAGCCTCGAAAACTGAGCGCATTACTGCTACCCTCTCCGCTG
TCACGAGAAGCGTCGGTGCCACTGCTGCATCCAAGACCACCACTGAGCCA
GATGCCGCGCTGGGGTACGAGAAGGACGGGGTTGGTCTGGCACAAGAAGG
TGGTCCACACTCACCCGCCGCAGCGCCAACTTACAGTGGCGAGATGCTGG
ACGCTACGGGAGCGACGGAACGAGGGCTGCCATCCCCACCAACTCAAGAC
CTTTCGACTTCAACGATATCGGCGGCCGCGCAAACGACGGGATGCATCGA
CGCTGTGGATGGGCGAGCTACCGTTCGAGACAGAAATGTTGGCAGCGGTA
GCGGCGATGGTGGGGAATGTGTGGGTGCGGCAACCATCTCTTCGACCGAG
CTTGACATGAGCCCAGCAAATACGAGGACGGATGAGTTCAGTGGAAACTT
TGGAAGCATCGCGGAGGCGGGCACAGCGATCGGGAAGGTGTCGATTTCTG
GCGGGGGGTGGTGA
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