mRNA_H-paniculata_contig3328.8913.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3328.8913.1
Unique NamemRNA_H-paniculata_contig3328.8913.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3328.8913.1 vs. uniprot
Match: A0A6H5JVQ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVQ5_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 9.490e-9
Identity = 37/67 (55.22%), Postives = 48/67 (71.64%), Query Frame = 1 
Query:  103 AELGLDSALKARLAAHNKVVNRGKCKFEPAKS-VRDYKKWEQETGKKYRDLSMDERRDANTEIDIML 300
            A L  D  LKA+LAAHN+ V +G+  +EP+K  V+D+KKWE +TGKKY  L+ DE+ DAN EI  ML
Sbjct:  597 AALSFDEDLKAKLAAHNRGVTKGRHTYEPSKGRVKDWKKWESKTGKKYYSLNPDEKADANREILAML 663
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BLAST of mRNA_H-paniculata_contig3328.8913.1 vs. uniprot
Match: D7G7F5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7F5_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 9.610e-9
Identity = 37/67 (55.22%), Postives = 48/67 (71.64%), Query Frame = 1 
Query:  103 AELGLDSALKARLAAHNKVVNRGKCKFEPAKS-VRDYKKWEQETGKKYRDLSMDERRDANTEIDIML 300
            A L  D  LKA+LAAHN+ V +G+  +EP+K  V+D+KKWE +TGKKY  L+ DE+ DAN EI  ML
Sbjct:  615 AALSFDEDLKAKLAAHNRGVTKGRHTYEPSKGRVKDWKKWESKTGKKYYSLNPDEKADANREILAML 681
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BLAST of mRNA_H-paniculata_contig3328.8913.1 vs. uniprot
Match: A0A836CC55_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC55_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 4.650e-8
Identity = 29/58 (50.00%), Postives = 45/58 (77.59%), Query Frame = 1 
Query:  127 LKARLAAHNKVVNRGKCKFEPAK-SVRDYKKWEQETGKKYRDLSMDERRDANTEIDIM 297
            L+A ++ HNK V +GK  +EP++ +++DYK WE +TGK+Y +LS+D+R +ANT ID M
Sbjct:    4 LEALISKHNKSVMKGKATYEPSRHTLKDYKAWETKTGKRYHELSVDQRAEANTAIDDM 61
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3328.8913.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JVQ5_9PHAE9.490e-955.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7F5_ECTSI9.610e-955.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CC55_9STRA4.650e-850.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3328contigH-paniculata_contig3328:2063..4037 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1033
Cds size318
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3328.8913.1prot_H-paniculata_contig3328.8913.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3328 2778..4037 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930027.635572-UTR-H-paniculata_contig3328:2062..27771622930027.635572-UTR-H-paniculata_contig3328:2062..2777Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3328 2063..2777 -
1691481116.3092675-UTR-H-paniculata_contig3328:2062..27771691481116.3092675-UTR-H-paniculata_contig3328:2062..2777Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3328 2063..2777 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930027.6535156-CDS-H-paniculata_contig3328:2777..28791622930027.6535156-CDS-H-paniculata_contig3328:2777..2879Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3328 2778..2879 -
1691481116.3266025-CDS-H-paniculata_contig3328:2777..28791691481116.3266025-CDS-H-paniculata_contig3328:2777..2879Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3328 2778..2879 -
1622930027.6735969-CDS-H-paniculata_contig3328:3150..32771622930027.6735969-CDS-H-paniculata_contig3328:3150..3277Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3328 3151..3277 -
1691481116.3408155-CDS-H-paniculata_contig3328:3150..32771691481116.3408155-CDS-H-paniculata_contig3328:3150..3277Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3328 3151..3277 -
1622930027.690237-CDS-H-paniculata_contig3328:3948..40371622930027.690237-CDS-H-paniculata_contig3328:3948..4037Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3328 3949..4037 -
1691481116.3563173-CDS-H-paniculata_contig3328:3948..40371691481116.3563173-CDS-H-paniculata_contig3328:3948..4037Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3328 3949..4037 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3328.8913.1

>prot_H-paniculata_contig3328.8913.1 ID=prot_H-paniculata_contig3328.8913.1|Name=mRNA_H-paniculata_contig3328.8913.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=106bp
GQGVLGGKGDAGLVLPRRATVGAGRPDVRRSTAEAELGLDSALKARLAAH
NKVVNRGKCKFEPAKSVRDYKKWEQETGKKYRDLSMDERRDANTEIDIML
ERTQK*
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mRNA from alignment at H-paniculata_contig3328:2063..4037-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3328.8913.1 ID=mRNA_H-paniculata_contig3328.8913.1|Name=mRNA_H-paniculata_contig3328.8913.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1975bp|location=Sequence derived from alignment at H-paniculata_contig3328:2063..4037- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTCAAGGTGTGCTGGGAGGCAAGGGAGATGCGGGGCTGGTTTTGCCGCG
AAGGGCTACTGTTGGGGCAGGGCGTCCGGATGTTCGGCGGTGAGATGGAT
GTGTGGATTATATGTGGTTGTTATGTTGTCTTGGACGTTGCTGCTCTGAT
AGCACCCCAAGTCATACCGAGATGCGTGGTTCTCGTGCTATGTTGTAGAC
TTGATGCGTATAGTCAAGTGTGGCTGACGTGTTGGATGCTTATGCTGCTC
TGATAGCACCTTAAGTCATGCAGCGAGTGCATGTATGTGTGCGCTGTGAG
TTCGCCTTTGTTTTTTTTCTCGTGTTGAAAGTTGCGGTGAGATGATTTGT
GAGGTTTTCCAACTTCCCCAGGCCGTGCGAAGGAATTGGTTCGGACAGAC
GTCGTATGTTTGTATTTTATGTGCTACTCTGTGTTTGGATAGACATTTCT
CGTGCAGAAAAGGCACCAATTGATCGCCCTCTGGAACAGACAAAATATGG
GGTGGCAATACATGACAGCAGCGGAGTTGGCCCCTCTACTTGCTGTGCTG
GTACGCAAATAGGTGTATGTAAAAGATTCCGCTTTTACAGGCAGTCATAC
GCTCATCATCCGTAGGTGGTGACGCCGAATGGGCTAAACAACTCCATGTC
TCTCTAACACCGGTTCATAAATTGAACTTCCCTTGCCTCGATTTGTGCGG
TCTTGTTTTTCATTTTCCGATTCCTCTTTTATTTTGTTTTGCCACTTTCC
CACCAACAAGGTCCACAGCTGAAGCTGAGCTTGGGCTTGACTCTGCACTG
AAAGCCCGACTAGCAGCACACAACAAAGTTGTCAACAGGGGAAAGTGCAA
ATTTGAGCCCGCTAAGAGCGTCCGGGACTACAAAAAGGTTGGTCCCTTAT
TTTCAATGTTTCAATGTAGCGATCAAACAAGCTCGAAAAGCATGTAATTC
CCCTCGGTTTCCTTGAGTGTAGAATTGAAACATTGATGAACATTCCCAAA
TGACCACCACCACGAATGAACTTGTAATTCAATTGAATATCGACTTTGAA
TGTTCCACCTTTTTACTGGTGTCTTTTTCATTTGGCACCCCCACGACTCT
TTCCATGCCTTGTATGTGGTTGTATCCCATTTGTAAATGTGTGTGTTGTT
TGTTTCAGTGGGAGCAGGAGACAGGCAAGAAGTACCGAGACTTGTCCATG
GATGAGAGACGAGATGCCAACACCGAGATCGACATCATGCTCGAGAGGAC
ACAAAAATAATACGAATGCAGCAGTAGAGAAATGGACAGGCGCTTGCAGG
CTTTCCTGTGGTCGACTTTGTTGAAAGGAGCGATTTGATTGGTCGAACAA
CCTTTTGGTCGGGGAGTGATGTCATGACAGTAGATGACGTTCCTCTCTGA
GTAGTAGGACATAAAGTAGTTAACTGCAGGCGCCACTTGCAGCTCAACCA
CTCGGGTCCGATCTCCCGTTTGACGAAGACGAGTGGGAGGATATGTATTG
AATCCTTTATAAGAGAGTAGAACATGTAGAGCTCTATTTAGTGCACCAAA
CAACTCCGCGACGAAGCATTTCAGGTCATGAGCCTGACTTTTTGAGCACT
TTGTTTCTTGAGAGCGGTTCTCGAGAACCAATATCGAGAACATTCATTAC
AAAAGATCTGGGCCGACAGCAGGATTTATGTAGACGGTGTTAGTTGAGCA
CGATGCTCCACCCCCGTGTTCTCATGCCTTCATAATCTGTTTGTGATTGA
TGATCTACAGACGACCTGTTGGACCAATAAATGTAGCACACGTGTAGAGT
TGTACTGTGATAGGACAAGGTATAACGCGATATGCGACGTAACTTAGTAG
GATCTTCATTTGGAAGGAATTATGACGATGAGATCTTTTCGTATTACGAT
TTTTCTAGGCGTCTACCAGCGGAGGAGGGTGAGCCCTACCAACTCACTTC
CAAATCAGGCCAGCTGCAAATCTCC
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Coding sequence (CDS) from alignment at H-paniculata_contig3328:2063..4037-

>mRNA_H-paniculata_contig3328.8913.1 ID=mRNA_H-paniculata_contig3328.8913.1|Name=mRNA_H-paniculata_contig3328.8913.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at H-paniculata_contig3328:2063..4037- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTCAAGGTGTGCTGGGAGGCAAGGGAGATGCGGGGCTGGTTTTGCCGCG
AAGGGCTACTGTTGGGGCAGGGCGTCCGGATGTTCGGCGGGTCAAGGTGT
GCTGGGAGGCAAGGGAGATGCGGGGCTGGTTTTGCCGCGAAGGGCTACTG
TTGGGGCAGGGCGTCCGGATGTTCGGCGGTCCACAGCTGAAGCTGAGCTT
GGGCTTGACTCTGCACTGAAAGCCCGACTAGCAGCACACAACAAAGTTGT
CAACAGGGGAAAGTGCAAATTTGAGCCCGCTAAGAGCGTCCGGGACTACA
AAAAGGTCCACAGCTGAAGCTGAGCTTGGGCTTGACTCTGCACTGAAAGC
CCGACTAGCAGCACACAACAAAGTTGTCAACAGGGGAAAGTGCAAATTTG
AGCCCGCTAAGAGCGTCCGGGACTACAAAAAGTGGGAGCAGGAGACAGGC
AAGAAGTACCGAGACTTGTCCATGGATGAGAGACGAGATGCCAACACCGA
GATCGACATCATGCTCGAGAGGACACAAAAATAATGGGAGCAGGAGACAG
GCAAGAAGTACCGAGACTTGTCCATGGATGAGAGACGAGATGCCAACACC
GAGATCGACATCATGCTCGAGAGGACACAAAAATAA
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